Array 1 289861-290499 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGL01000010.1 Salmonella enterica subsp. enterica serovar Infantis strain MOD1_Per136 Per136_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289861 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 289923 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 289984 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290045 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290106 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 290167 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 290228 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 290289 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 290350 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 290411 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 290472 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 306782-308679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGL01000010.1 Salmonella enterica subsp. enterica serovar Infantis strain MOD1_Per136 Per136_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 306782 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 306843 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 306904 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 306965 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 307027 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 307088 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 307149 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 307210 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 307271 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 307332 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 307393 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 307454 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 307515 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 307576 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 307637 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 307698 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 307759 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 307820 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 307881 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 307942 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 308000 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 308061 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 308122 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 308183 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 308244 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 308305 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 308366 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 308427 29 100.0 11 ............................. CGGCCAGCCAT Deletion [308467] 308467 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 308528 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 308589 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 308650 29 93.1 0 A...........T................ | A [308676] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //