Array 1 371175-372663 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMJ01000005.1 Listeria monocytogenes strain NRRL B-33100 PROKKA_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 371175 36 100.0 30 .................................... CTTTAACTTCTTCTTTTGCTTTAGACCACG 371241 36 100.0 30 .................................... TATCGCTCATGGTGCCACCTTTTAACATAC 371307 36 100.0 30 .................................... TGCCAACGAATGCCCCATTTTTCTGCTTCC 371373 36 100.0 30 .................................... ATATTTGTAGCTTTCAAATTAGTGTCAAAT 371439 36 100.0 30 .................................... CGGAACGTGCGTTTGTGTCCGTTGTGTCCG 371505 36 100.0 30 .................................... CGACGGTCAACTTGCCAAGTTAATTAGAGA 371571 36 100.0 30 .................................... ACTTGATGAAAGAGTAATTAAAGTCTTGCA 371637 36 100.0 30 .................................... ACGTTCCATACCAAACTCTTTCAAAACGGA 371703 36 100.0 30 .................................... TTACACATCTGGACGACAGGTTGTTTTCAA 371769 36 100.0 30 .................................... TAACATTTTATTGCAAGATTGGTTATCAAT 371835 36 100.0 30 .................................... ACAAAACATACATATTAATCACTTCTAATT 371901 36 100.0 30 .................................... TCAAAGAAAGATAATAATGAAACTCAAGTA 371967 36 100.0 30 .................................... TTAGATATAAATCTTGTAACGTTAGAACAA 372033 36 100.0 30 .................................... TTGGTTTGATGACGAACTATTCAGTTGCTT 372099 36 100.0 30 .................................... CAGCACTCTTTTTCTGTTAACAATCTGTAT 372165 36 100.0 30 .................................... AAGCATTAAATGCTATTCATAAAGCGATGA 372231 36 97.2 30 A................................... TGATTTAACTGTAGCCTTTACACTACTTTT 372297 36 100.0 30 .................................... TGAATATCAGCCGGTAAGTGGTCCTGAACC 372363 36 97.2 31 .....................A.............. AAAAGTTCTTTTTTGTCCCGCTTGTAATGGA 372430 36 100.0 30 .................................... TAGCAAATTAACACTAGAATACGATTCAGG 372496 36 100.0 30 .................................... AGCCAAATTAAAGAGCAAACCTTTGACCCG 372562 36 100.0 30 .................................... AGAACAACTACAAAACCAGCTTCTTGAGCG 372628 36 75.0 0 ............CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAGAAGAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACGGAGGAAGAACTGCTAGAGTTGAGGCGGTATATCTCTTTATATCAAGTCAAAGTTCTATTTATTGAACCTAGAAAGATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGATACAGTATTACTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATTCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTCGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATCTTATATGATTATATTCTAAATGCGAGTAAAAATAGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //