Array 1 164-2546 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRW01000118.1 Thiococcus pfennigii strain Pfennig 8320 scaffold0118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 164 36 100.0 37 .................................... CGAGGAGGGCGGCAAGTACAACGCTTGCCTGATCGTC 237 36 100.0 37 .................................... CAGACGATCAAGATCGAGGCACACGAGCTGTGAGCTG 310 36 100.0 36 .................................... CGCGGCTCGGGGCTGCGGCCCGTCCGGGTCGAAATC 382 36 100.0 39 .................................... GGTCTGCCCCGAGTGCGGGGCGCTGATCGAGGAGCGGCA 457 36 100.0 37 .................................... CCAGCGAATCGAAAAACCCTTCGCCGCAGAACGCCCG 530 36 100.0 37 .................................... TTACGACGCGATCCCCTAGCCGTTCCAGCAGCTCCCA 603 36 100.0 48 .................................... CGCGGAATTCCCGATCCCCAGGGCGCGGGCGAGTCGCGCCTGGTTCTT 687 36 100.0 37 .................................... GCGAGGAGCGATAGGACCTGCTCCGCGCGCCGCGCCT 760 36 100.0 38 .................................... CTTGGAGCGCGTGCAGCGGCGTCCCCGCCTGTACGTGC 834 36 100.0 36 .................................... CAGAGGGCGTACAGCGTGACCTCGCTGTAGGCGAGG 906 36 100.0 36 .................................... TTAGATGTTGCGCTGAACCCCAACTCGTCAATGGCA 978 36 100.0 39 .................................... CTGCTCCCCGCCGATCCGCCCACCGGTGAATAGCAGGTG 1053 36 100.0 36 .................................... GGCGAATTGGGCGGCACAGGAGTTCTCGCTGCCATC 1125 36 100.0 38 .................................... TCGAGCACCTCGATCGAGGGCGCGCCCTCCTGGTCGGC 1199 36 100.0 36 .................................... CCAGAAGCAGATCGCCAGCAACTTCTACAGCAACAG 1271 36 100.0 36 .................................... CCCGTCCGAGCCCGACCCGATTGGGGATCTCTTCCT 1343 36 100.0 45 .................................... GTCGCACACGACCAACAAGCCTGCGAGCAACAAGCTGATTACCAA 1424 36 100.0 36 .................................... TTCGAAGGGAAGTTCGCCGCGCATAGTGACACAAAC 1496 36 100.0 36 .................................... TCCGGCAGCGATCCTTTGCCCTCCGTCGCCAGTCTG 1568 36 100.0 36 .................................... TGCCATATCCCTAACGATTAGCTCACGCTCAGCCAT 1640 36 100.0 37 .................................... GGCATGCCACGCATCGGCCGCATGGGTGCGTATACGG 1713 36 100.0 37 .................................... CTGGACGACGATCGACGAGGATAGCGGGAGCGGGAGA 1786 36 100.0 36 .................................... CTCCGAATGCTGCCGCGGCGCGACCTGATCTCGACC 1858 36 100.0 37 .................................... CGCGCAGATACTCGTGCCCGAGGTACGCACGCACCAT 1931 36 100.0 36 .................................... TCGATCGTCAGCGCCCCGAGGTCCGCGAACTGGTAA 2003 36 100.0 36 .................................... GGTGTTCCTGCCGCCGCATGATTTTGGGGTGTACTG 2075 36 100.0 37 .................................... CCACGGACACCAAAGTCATAAATATTCCGTGCTCCTC 2148 36 100.0 35 .................................... ACGGTGACGCGAAGCCCGATTGACCGAAAGTAAAA 2219 36 100.0 37 .................................... TGCGGTAGCGTTCGCCCTTGTGGTGCACCGTCACCAT 2292 36 100.0 37 .................................... TGGGCGAGCCGTCCGTGAGCTCCGCGCGGCCCTGGCG 2365 36 100.0 37 .................................... CCGGCGCCCGTGGCGAGCCAGCGCGCCGACACTCCGA 2438 36 100.0 37 .................................... CTCGACGAGGAACGCCACGACTGCGGCCATGCGTAGG 2511 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 33 36 100.0 37 GCTTCAATGAGGCCGCGGCGAATCGCCGCGGAATTC # Left flank : AAGATCAGCCGCCAGGTGTTACGGTTCTTCAAACACTCCTTCCTCAAGCCAGCCTCCCCTGCGCTCTATGAGCGGCACCTACGGCCGATGCTTTTGCACTACCTGTGATTGGGACCGGACACCGTTGCGCCGAACATCAAATCCACGAGACCCGGGACCGGGCG # Right flank : ATAGGTAGTGCCTGGAAGAAAACCCCGTTGAATTCAAAAAAACCGCTGGCCTCATGCCGCCCCGGCGGCGGCTTTTCATTCGGATCGAGGCCGTCAGCGAGGAATACGGGGGGGCGATGTGAATTGCTTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCGGCGAATCGCCGCGGAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 18661-15388 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRW01000018.1 Thiococcus pfennigii strain Pfennig 8320 scaffold0018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 18660 36 100.0 35 .................................... ACCGAGACCAAGACACGACGCATGACCGCGACCAG 18589 36 100.0 36 .................................... CTCCGCCAGCGGCGCGAACACTACCGGCTGTGGGCG 18517 36 100.0 34 .................................... GTGTAAGCGATGGCACGGGGCGGCTGCTCAAGGT 18447 36 100.0 36 .................................... ATGCAGATGGCCGAAATGATGGCCAAGGCATCTGTG 18375 36 100.0 35 .................................... GACTTCATCCAGAAGAACAACCTCACCCTCGCCGA 18304 36 100.0 35 .................................... ATCTTGTCGACGTCGTGCAGCAGCCTGGTCTCGCC 18233 36 100.0 35 .................................... GACTGGCTGCACGAGTCCTACGGCTGGGAGCGGGA 18162 36 100.0 36 .................................... ACCACCCAGATCCCCTACGAGACGCGCGACACCAGC 18090 36 100.0 35 .................................... ACCGGCTTCAGCTCGGTGCAGCTGCCGATGCGCCT 18019 36 100.0 36 .................................... CAGCTGCTGGACGCCTACGCGGAGTACCACCGCGAG 17947 36 100.0 35 .................................... AAATAGGCTCGGTCCGTCTGATCCTGCCGGGTCAT 17876 36 100.0 36 .................................... TATCGAGACGTCCTTCCGATCCTTCGAGGACCTCAC 17804 36 100.0 36 .................................... TCGATCTCAATACGAATGGGTCGAATATTGAGCAGA 17732 36 100.0 36 .................................... CCGAGCACTCCGCCGGTGAACGGCAAGTATTGCTTG 17660 36 100.0 35 .................................... ATGGCGAAGATGCCCACGATGGCCACCAACACGAG 17589 36 100.0 35 .................................... AACGAGAGAGAGAAGCAGCACTCGAAGAATGCTTA 17518 36 100.0 34 .................................... AATACGTGGGCGGCATTTCTTGGTGCCATCGCTG 17448 36 100.0 36 .................................... TCATGGGCATAGCGGGCCTCAGCCTGCCCCATACGC 17376 36 100.0 34 .................................... AGTCCGGCTCAGGGCCAACAGTGTTACGCTCGAC 17306 36 100.0 35 .................................... GCGGTAGTGGGGTGCCTGAGATACCGAATCCTTGC 17235 36 100.0 38 .................................... AAGCCCGAAATGCCCGCGCCGATTGAATCGACGACTGT 17161 36 100.0 37 .................................... CCATGGCGGACCGACAAGGCAAGAGCAACCGGACGGC 17088 36 100.0 36 .................................... GCAGGCGCTCGTGCCCCTGGAGGCTGCGCCGGGGGC 17016 36 100.0 41 .................................... ACGTTCGAGAAGTCGTTCAGCCGCATGGACGACGCCAAGCG 16939 36 100.0 35 .................................... CTGGCGACGTTTTGGGCGTCGAGATTTGCGACAAG 16868 36 100.0 36 .................................... GAGGCGCTGCTCGCGCCCGTCCTCGCCGCCCTCGAC 16796 36 100.0 37 .................................... GCACATACGATGTGAAAACGGGACAATTCGCCGCCGG 16723 36 100.0 34 .................................... GCCTTGAGCTGGTCCTTGTTCGCCTTACGCCATT 16653 36 100.0 36 .................................... TTAGGACTGACTGACCCCCCCCGGCCCCCCAAGGGG 16581 36 100.0 37 .................................... GGTCGACGGATACGACCACCGACACGATGACGGGCAG 16508 36 100.0 36 .................................... TCGTTCGACTGATCCAGGAAGCCGTAGCGCGTCAGC 16436 36 100.0 34 .................................... TTGTGCCCCATGCCACGGATGATCTTACGCCCTG 16366 36 100.0 35 .................................... TCGCGGACGCGTCGACTTTCCTGAATAGCTCGCCG 16295 36 100.0 36 .................................... AGCTGCGACGCTTCTTTGACTTGTATTATCAGGTCT 16223 36 100.0 38 .................................... CGGCCCAGCTGGGTCAGTTGGTGCTGGTCGCGATCGTC 16149 36 100.0 36 .................................... AGCTGCGACGCTTCTTTGACTTGTATTATCAGGTCT 16077 36 100.0 37 .................................... CGTAAACGGCGTGGTTATCGCGGTCGTCGGAGAGGCC 16004 36 100.0 37 .................................... ACATGCCGCCCCGCCAGCCAGCTTCGCCAGCAGGTCC 15931 36 100.0 37 .................................... GCCGCCAACAAGCAAGCGGTCGAGGGCGCCACCGACG 15858 36 100.0 34 .................................... TGTTTCCCGACCAGCCGCCGAACGTTGCTATCCA 15788 36 100.0 36 .................................... CGCCCAGGATAGCGCGTCCGGTAGCGCATCGGTCAA 15716 36 100.0 39 .................................... AGGGGGTGAAGGATCGGCGAGGCCATCTCTGGCTGGCGC 15641 36 100.0 40 .................................... GGGAACTGGGCGGTCTTGATGATGCTGGTCGCCCCGTCGA 15565 36 100.0 34 .................................... AGGCACCACCAGCTTGATGTTCTCGATGTCGATC 15495 36 100.0 36 .................................... CCCCTGAGGATGAACTCGCGGTCGACGCCGTACTCC 15423 36 94.4 0 ....................CG.............. | ========== ====== ====== ====== ==================================== ========================================= ================== 46 36 99.9 36 ACGAACCCATCCGAGATGCCGAAAGGCGTTGAGCAC # Left flank : TATGACATCCGCGATCCGCGGCGTTGGCGGCGCGCCTACAGGATCCTCAAGGGCTCGGGCGAGCGCATACAATATTCTCTCTTTCGCTGCCGTCTATCCAAGACCGAGATGGAGCATTTAAGATGGGAACTCCATCGCGAACTCGCCGACGAGGACGACCTGATGTTCGTCCACCTCTGCCCACGCTGCGCCGGCCGCGTGAAGATCAAAGGCAGCGCTGAAGACTGGTCGCACGATCCTCCGCGCTACCAGATTCTGTGACGGCAAGCACCGACGGGTGGAGCGACCTGGCGCGCAGCAGAATACAAGACAATCGATTTTTAAACAAAAAGTTACCAGCCATTCATCCCAAAACCGAACCATGGCGAACGCAAGCCTCTGTTCTTCAATCTCGATCAGGATCTGCACCTCTTTTTTCGTAGCACGTGCGGTGTCTCGACTCCAGATGCCTGCGCGGGAGACCAAGACAACGAGAATAGACAAAGGGATACAACCCAGCG # Right flank : ATCTCGACAGCCAGCACTGGCGATCGGGGACTATGCCTCCGCCGCGGGGGGCAGCAGCGGCTGGCCAGCACTCGGTCGGCGCTACCGTGCCGAGGTCTTCCTGTCCGAGGGCAGCCAGCACGATGACATCTTCGACTCCAGGGGACCTTGAAAAATCGCCATCCGGGGACGTTCTCGAGACGGGACCTCCTTGCCCCGCGCGGGCACCTTGAATGTTCAAGGCGCCCTACAGGCGCGAGCCGTCGATCGCCGACACCCTGTCGCAGTACCAGAAGCGGTCCAGTTGCTGCACCTGACGCGATGACGCCGGCTGGCCGCCGCATCTCCGGGTGCGGCGGCGCCGCGCGCCGGGTCGGCGGCTCGATCACCGTGCCCAGCCTGGGCCTGTTCGTGATGCCGGCGATCCAGCCGCCGGCCGATATGGGTTGTCGGTCAGCGCTCGGGCGGCTCGACGCCGTACCCATCGCTCAGTGATTCGATGATCCGGCATTCCTCGATCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGAACCCATCCGAGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 156-1421 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRW01000009.1 Thiococcus pfennigii strain Pfennig 8320 scaffold0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 156 36 100.0 37 .................................... TTTAGACACCTTCCGCCCGACCCTTGACCGGCTCGCC 229 36 100.0 36 .................................... CTCGGGCCGTGGGTCGAGTGGGACGGGGTCGCGCAG 301 36 100.0 36 .................................... CGGGTCACAGGCCGTGATGCTGCGACCGGCAGCGGT 373 36 100.0 38 .................................... TGCTTGGATATCGCTGCAGTACCGCTATCTGCCGGTAC 447 36 100.0 35 .................................... TCAATGAGCCTAGATGTCACGCTCACGGCGACAAG 518 36 100.0 36 .................................... GTCGATATGAGCGACTTGGCGCGCTGGTCGTATGCT 590 36 100.0 36 .................................... GTCGGCTTGATCCTGCGCACCCAGTCAGGGCGCAAC 662 36 100.0 36 .................................... ATCGTGTTCGAGTGCGAGTATCGGATCGAGGCCGGC 734 36 100.0 35 .................................... TTACGACGCGCCGATGGCGCGACAAGAAACGACGC 805 36 100.0 35 .................................... GGAATCTGTCTTGCGGATGCTCAACTTGGACTTGC 876 36 100.0 35 .................................... GACGAGACCGAAACTTGCTCTTTCGAGTTCACCAT 947 36 100.0 39 .................................... GAATATGGTCGGGTCTTTCTCGACAAGATCATCGACATC 1022 36 100.0 36 .................................... TCCATTCTTCACCTATACGGTTTTTTTTTGGTAGTT 1094 36 100.0 36 .................................... CTGGGGGCGGGGGGGGATCAAAACAAAATCTTGGCC 1166 36 100.0 38 .................................... GCGGCTGAATCCGGCCGCCCGGATCGCTTGAGGGCAAC 1240 36 100.0 38 .................................... GTGGCGGTGGCGGTACTCCTGAGATACCCAATCCGTGC 1314 36 100.0 36 .................................... TTGTGCTAGAATCGTGATACACCGATTTTCCCCCTG 1386 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 100.0 36 GCTTCAATGAGGCCGCGGCGAATCGCCGCGGAATTC # Left flank : AATCAGGCAGTTAGCGGCGGCGCCGTGGGCCCAGACGGCTTCCGGCCGCTCGACTTCCGGTGCCCGATTCGATTATAAGGCATTGTTCTTGCGATTGAAAACGACTTTCCGTCCAGGCACTAGGTAGCCAGACGGCGACGTTACGCCAGCGACTGG # Right flank : CCGCTCGCGTTTGCGACCATAAATGGTGCGGGTCGGGGAAGGTTTTGCGAGGGCTGAACATGTGAATAGCCAAGAGGAGGTGGGGCGGTTCGAGCGTCGGGTTCAGATTGTACCGTAATTTGCGGTTTTTTAAAGAGCAAAGCTTTTCGAGCGCTGCCAGGGGTTTATGTGGCGGACGAGCGCTCGCTCGGTGTCGGCGGATGCGTGCGTCGGTACGACAGTCCGGATGTGGCTAAGTTCTCGGGTGATTATGGAGCGGTTCTGGCGTGATTGGTAGTCGGGTGGCGCATTCTCAGACGATCACGGGTTCGTGTTCGATCGGGGTGTAGTTGCGCTTGCCGAGGCTGACGACGCGCGGGACCACGGCTTCGGCGTGGCCGAGGTCGAGGACGATGATGTGGTCTTCGGTGTGGTGGATGATGCCGTCGAGGAGCGCGATGAGTTCCGCGTGTTGGACCTTGGTGAGGCGGCACTGGAAGACCGAGAGTTGGAGCCAGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGCGGCGAATCGCCGCGGAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 8928-10679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRW01000076.1 Thiococcus pfennigii strain Pfennig 8320 scaffold0076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================ ================== 8928 28 100.0 32 ............................ ACGCGAGCCACCCGATCACGGTGCCGCAGATC 8988 28 100.0 32 ............................ AGATGTCGCGCTCGACCGCCACGATGGGTTCG 9048 28 100.0 32 ............................ TGGATTGCCTGCATGCGGGCTGGCCTTGCCAG 9108 28 100.0 32 ............................ ACCTTCGCCCTCGTGTTGCAGCAGACCCTGTT 9168 28 100.0 32 ............................ AGCGCCGGGGCGTCTTGATGCCGAAACATCAC 9228 28 100.0 32 ............................ GTGGCCTCGGCGACGTCCTGTAGCACGCCCTC 9288 28 100.0 32 ............................ TCGGCACCCTCGTGCACGCCGAAACCGGCCTG 9348 28 100.0 32 ............................ ACTACCTGACCAGCACGGCCGCCGCATCGACC 9408 28 100.0 32 ............................ ATTCCCGCGCTGGCGCTCGCCCCAGCGTTCGT 9468 28 100.0 32 ............................ CAGCGCCGTGCCCGCGCGCCCGGCGCCACCTT 9528 28 100.0 32 ............................ TGGCGGTTGCCGGCCCGCAGGCGAATCTCGAT 9588 28 100.0 32 ............................ TGGTCGGCGAAGAGGCGCATCGGCAGCTGCAC 9648 28 100.0 32 ............................ TCCCAGAGGCGGCCGTTGGCGACGGGCAGCTC 9708 28 100.0 32 ............................ CTGCTGCAACACGAGGGCGAGGACGACAGCAC 9768 28 100.0 32 ............................ TGGCCGAGAAGGTGCTCGCCCTGGATGCCGCG 9828 28 100.0 32 ............................ ACGGACTGGACGCTCCTCGCCGAGGGCACGCT 9888 28 100.0 31 ............................ GCACGTTGACGGCGCTGAGCGCCTCGGTCGA 9947 28 100.0 32 ............................ TCGGCACGCGAGCCGCCGGCCAGCGCATCGGC 10007 28 100.0 32 ............................ ATCTTGTCGAACGCCGCCGCCGTGGCGCCGCC 10067 28 100.0 32 ............................ GCGAGGTGAAGGACGGCGCGGGCGAGCTGGCC 10127 28 100.0 32 ............................ TTGGTCTTCAGCGCCTGGGCGTCGAACTCGAT 10187 28 100.0 33 ............................ TATGCCGGCGCCTGCGCCGGCATCGCGGCTGAT 10248 28 100.0 32 ............................ TGTCGCAACCCGCTGCTGGCGGTGTGGTGCTG 10308 28 100.0 32 ............................ TCGATGCCGCTCGAGGTGCTGTCGCACCACGA 10368 28 100.0 32 ............................ AGTCGCGCGCGGCATAACCGCACTGTCTGGGG 10428 28 100.0 32 ............................ AGCCGATGCCGGTGCTCTCGGCGGCGGCCTGG 10488 28 96.4 32 .......................G.... TACGTGCAGCGCAAGGGGCATGTTGACCTCAA 10548 28 82.1 76 ..............C...C...TC...G GGCCGGTGGTCGCGCTCGTTCGGTGCTGGATGGGCCGCTCGGCGGTCGTCCGCAGGCGGGCTCCTGCGGCAGGGGC 10652 27 75.0 0 ....G.......-G....G..G.C..C. | A [10672] ========== ====== ====== ====== ============================ ============================================================================ ================== 29 28 98.4 34 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGGCCAAGAGCAACCCGGAGCGACTGCGCCGGCGGCTGATGCGGCGCCATGGGTTGAGTCGCGAGGCTGCACTTGTCCGTCAGCCGACGCGCGAAGGCGAGCGCTTGGTGTTGCCTTGGCTCGAGGTCCGCAGTACCAGCACCGGTCAGCGCTTCCGGCTGTTCGTTGACCAACAGGTGCATCCGGGCCCGCCCACCGCCGGCGTCTTTAGCCCCTATGGACTCAGCGCGACGGCGTCTCTGCCCTGGTTCTGAAAGGGCCGACACCGGAGTCGCAGGTGCCGGCCATCGGCCGGAGTGGTTCGACGCAACGTCCCGTTCGGGCCGCAGAGGGTTGGCAGCGGAAGCCGGCCAGTCCGGTGGGAGTCGCCAACCCTTTTTTTGGCACTGAGGGAGCGGTTCTAAAAATCAGATACTTGCGTCTTCCTGATGAATTTGGATCGAAACCGGAATCTTCCAGAAAGATCTTTAACAATAATGGCTTGAGGGGATTTTGGTCTT # Right flank : AGCGGGCGGCCTGCCGCTAGAATGGTCGGCCGTCCAGCGACCCGCGATCTGCTCATGGCCCGACTCCTCTTGTTCAACAAGCCCTACGGGGTGCTCAGCCAGTTCACCGGCGGCGGTCCGGGCGAGACGCTGGCGGCCTTCATCCAGCTGCCGGGCCTCTATCCGGCGGGGCGGCTCGATAAGGACAGCGAGGGGTTGTTGCTGTTGACCGACGACGGGGGGCTTCAGCATCGCCTCAGCCATCCGCGCCACAAGCAGTGGAAGACGTACTGGGTGCAGGTCGAGGGGGTCCCGGAGGCGGGGCAGCTCGAGCGGTTGCGGCGCGGGGTGGAGTTGAACGATGGTCCGACGCGCCCGGCGCGGGTCCGCCCGCTCGCGGAGCCTGCGCTGTGGCCACGGGATCCGCCGGTGCGCTTTCGCCGGCAGATTCCGACCGCCTGGATCGAGATCGCGATCCGCGAGGGCCGCAACCGCCAGGTGCGGCGGATGACGGCGGCGGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //