Array 1 10092-10793 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWKC01000361.1 Streptomyces sp. SID2563 SID2563.c411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 10092 29 100.0 32 ............................. CTCGACAACCCCACGCCGCAGGCCGCGAAGTG 10153 29 100.0 32 ............................. GATGAGCTCCAGAAGCGCCGGGTGGCGCCTGG 10214 29 100.0 32 ............................. AACATCTTCATCCCGCTGCCGTTCGGGCCGAT 10275 29 100.0 32 ............................. GAACGGAGAGCAGCTCGGCATTTCGGGCGAGC 10336 29 100.0 32 ............................. TCGCTCAGGAACGTGCCATCGACGTCCGTGAC 10397 29 100.0 32 ............................. AGCCAGGTGGCGCCACCTGCGAGCAGGAAGAG 10458 29 96.6 32 ......A...................... CCTCAGGCGATGCGGCAGAACCGGCCGACGAC 10519 29 100.0 34 ............................. TACCCCGCGATCCAGGCCGCGCACCCGCCGGAAC 10582 29 89.7 32 ......T..C............T...... CGTGTCCGGGCGGAGCGGCGGGCGGGGTGGTC 10643 29 89.7 32 ......T......A....A.......... GGCTCCTTCTACGTCCTTGACGAACAGCGATC 10704 29 96.6 32 ......T...................... CTTCCCGCTTCCAGGATCCGTTGGACCTCCGG 10765 29 93.1 0 ..............T........C..... | ========== ====== ====== ====== ============================= ================================== ================== 12 29 97.1 32 GTACGGCCCGCGCGCGCAGGGACGGTCCC # Left flank : AGCCCGTAGGCGAAGTTGAAGCTCGCGCGGGAGGCGTTGGCGTAGCGCTTCAGCACGAGGACCTGCTCGGGGGTGGGGTCCAGCGGCTCGCGGACGACGATGGTGGTGGTGTTCTCGGTGGTGGTCATGTTGAGGAGACTGACATGCGCTACTGACAACACTTATCCAGGAAAATGACAGTGTGTCCGTTACGGGGAGATTGGGTTCATTCGTCTATGGTCGAGGTCTGGCCTCCCCTCGCGGGGGCGGCCTCGTCCCCTGGATGGGGGAGTAGAGCGCCTGTGGACTGCACCAGCCACACGTGGCAAGGGCAGGAAACCCTCCGAGTTCGGAGACGGAAGCAGGCAGGCCTCGCCCCACGCGGGCAGGTCACCGTGGCCGGGAAACCGAGCCACCCGTCCCAACGCGGGCACCACACTGTAGGTATAGGCCTTTTGTCGCGATCGGTGAAAGTGGACACGTCGACCATGTTCTGAGTGCTGCGCTGCAGGTCAGCGAGA # Right flank : CGCATCGGCGTTGTCCTGGCGGAGGCCCGGGTCACCATCCCGTGCAGCTGGTGGCAGCTCGCATCGCCGGGCGGTGACGTGCGAGATTTCGGGTCCTGTCGGCGGGCCCGGGGTCTCGCGGGGTGGGGGAGCGGTCAGAAGTCGTCCCCGTAGCCCGGCCGCTCGGAGGGCGGTCCGAACCGCTTGATGGACCAGCACGAGCAGTTCGCCCCTTCGAACAGCTCTTCCTCGCACTCCTCGTGGTGCTCGCGCACCGCCCGCCTCGCGGGGGCCGCCGACGGCGTGGGCGGTGCGGCGGGCGGCCCCGGGGCGGCGGCCCCGGCAGCCGGGGCCGGGCCCGCCCACTCCATGCCCAGCGCGGCGAGGGCGGCCAGCTGCTGCGCGGTGAGCCTGTCCCGCCGGCTTTTGGTGTTGGAGAGCCACACCCCCAGTCGTAGAGGCACCGTCTCGCCGTCGACCACGACCTCCACCACCGCCCCGCGCGGGACGGGCCGCTGCCC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGGCCCGCGCGCGCAGGGACGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2019-1626 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWKC01000405.1 Streptomyces sp. SID2563 SID2563.c460, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2018 29 100.0 32 ............................. ACCGTCGCGCGGGCCGCGACCAGCGGGTCAAT 1957 29 100.0 32 ............................. GAGCAGTGGGGCAGGCAGGCGATCCGCAAGAT 1896 29 100.0 32 ............................. ATGGGCGGCGAAGGCGAGCTGGAGTGTGATCT 1835 29 100.0 32 ............................. GGGACCAACGTGGAGAGCAGGGGCGGTGACGG 1774 29 86.2 31 .T.C..................C..C... CGAATGGGCGACGACGCGTTCCTCGTCCGAG 1714 29 79.3 32 .TC.....T...T...TA........... CTGAGCTACAACCCGCCGTACCAGGCCGGTAC 1653 28 86.2 0 .T.C...T.................-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.1 32 GCGTTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCCCGCTCGTAGAGACTTACGGCCCCGCACCCGCCCCAGGCCACGAAGGCGTCGGGTTCGTGGTCGTTCCCGGGGTGCGGGAAGGAGACCTTGAGCACGGCGGGGGGCGTGTGGTCGCGCCGGACGGGGAGGATGATGCCGACGCCGCCGTGAGTGAGGGGGCCGTCGGGGGCGCATGCCCATTCGTCGGCCAAGTCGACGACGAGCCGCGGTAGTTCCGCGAGCCACGCCTCCCCGGCGGGCCCCTCACGCTCGATGGTGGTCCGCGCGAATTCCTCGGGAATCACGATCATCCGGGCACTTTACGTGGGGCGGGCAGGGGCGGGTTGGGGTTCGCGGGGCGGTGGGTGGCTGCCGCTGCTGAACGGGGGCGTGGGTGGGGGTGTTGACCTAGGGTGGGGGTGGGTGAGTGTTGTGTGGGCGTTGAGGGGGATATGCCGGAGTGTGCGAGAGTGGTCAGAACCAGCCTTGACGCGCGGCAAAGTCGCAGGTCAGGAAGA # Right flank : GCCGTTCGCCGGCCTGCTGCGCCTGACGCCTTGGCCCCGCTCCCCGCGCGGCCCTAAGGCCGCCCACGTACCCTGGCCGCCATGCCCACCCACCCCGAACCCCTTAGCCTCCACCCTCTAGCCTTCACCCCCGAGGAGATCCGCGAAGTCGTCGCCCTCTACGCCGGCAACCCGGCCTACTGGCGCGCGGCAGGCGAGTATGACCCCGACGACATCCACGCGGCGCAGGTTGAGGCCGATCTACGCCGCGAGGTCGCCACGGAGGGCGGCGAGGTGTTGCTCGCGCGCAGTGGGGGAGGGCGGCTCGTCGGGGTCGTCTGTCTGCTGCGTCGGCATCCGAGGGACGGCCTGCCCTGGATCGGGCTGCTCATCGTGGACGGCCGTGCCCGCCGTACGGGGATCGGGCGCCGTCTCGTCGGGCTGGTCGAGGACCGGTTTCGGGCCGAAGGGCGAAGTGGCCTCCGGCTCGCCGTACTTGAGAACAACCCGGATGCGTTGGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-274 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWKC01000568.1 Streptomyces sp. SID2563 SID2563.c652, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. GTGCGCGGCTACCTCGCCGGGGTCGGGGAGGG 62 29 96.6 33 .....................G....... ACCACGTCGACGGTGACGGTGCCCAGGCGCACG 124 29 100.0 32 ............................. CTCGGCACGGCGAAGCTGTCGCCCGACGGGTG 185 29 100.0 32 ............................. AGCGTCGCGACGACACCCGCGCTCGCCAGGGC 246 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWKC01000685.1 Streptomyces sp. SID2563 SID2563.c783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2 30 100.0 31 .............................. CGGAGCTCGGCACCGAGGTGCCCGGCACCCT 63 30 96.7 31 .............................G AGGCCCTGGGCCTTGAGGATCCCGATTGCGC 124 30 100.0 31 .............................. GGGCCACCACGTTCTCGCCCTCCGTGAACCC 185 30 96.7 32 .............................G ATGGTGTCCCCGTACGGCGGGGGCGGATATCC 247 30 86.7 31 ...........A.CC..............A TGCGGCCGTCGCGGTCGAAGCCGCCGCCGCC 308 30 86.7 19 .C........TA..C............... CGTACAGGCCGTACATGCC Deletion [357] 357 30 86.7 31 ...........A..C..........C...A TGCTGTGCGACGCGCCCGAGATTCAGCTCGC 418 29 73.3 0 T............AC.....A..-CA...G | ========== ====== ====== ====== ============================== ================================ ================== 8 30 90.8 30 CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Left flank : GC # Right flank : GCGCAACGCGCGGCCCTGCGCCCCGTAGCCGTACGTGCGGCCCCTCAGCTCCGGTAAAGCGCCCAAGAAGGCCCATCCGCCTCCCCGTACCAAACCCGCTGCCCCGCCGGCGTCACCGTAAGACCGAAGTCCTCCCGGGCCGGTGCGACCCCCTCCGGGAAGACCGAGACCAGCTCCTCCACCGCGTCCCACAGGCGTCGCGGACCGATTTGCCGTGCCCTCCCCGACGCGTGGAGCGTGGCCGTGGAGCCGTCCTCCGTCCAGAGGCCGACCCCGGTGACCTCGCCCTCGTCGTTGCGCCAGGAGCATGAGCGGTATCCCGGAAGTGCCAGGGACAGTGGGAACTTCAGCCGGTCCAGTACGTCCGCCACAGGCACCGATGTTGCCGTCCCCGCCTTCCTCTCCAGGCCCGCGAAGTCTGGGGCCTTCGTTGGGTGACGGCGCTGCATGAAGTACGCGGGTGTGGGGAGGAAGCGGCCGGTCGCCTCACCGGCCTCCGC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 202-414 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWKC01000697.1 Streptomyces sp. SID2563 SID2563.c795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 202 30 100.0 31 .............................. CCGTCGGCGCGGACGTCAAGGGCAGTATGCT 263 30 93.3 31 ............................AA AGCCCCTGCACTGGCGCGAGGAAGTTTCAGC 324 30 100.0 31 .............................. ATCCGCTTGCGGACAGTCAATGATGTGCCCG 385 30 93.3 0 ............................CC | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 CTGCTCCCCGCGCGTGCGGGGATGGTCCTG # Left flank : AGGAGCGGGTTTGGGTGGATGAGGTGGGGGAGTGGGTGTGAGTGAGGGGGCGGGCTGACGGGAACGGGCCTGCTTGAGTTGGCGGTTGGCCTAGGCTGTGGGGTGTATGCCAGCTGTGGGGCTGTTGGGGTGGCTATGTCGGAGTCCGCGAAAGTGGTCGGAAACGCCACTCGCCCGAGGTAAATCCGCAGGTCACGCAGTC # Right flank : | # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //