Array 1 1047152-1048214 **** Predicted by CRISPRDetect 2.4 *** >NC_015975.1 Ligilactobacillus ruminis ATCC 27782, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1047152 36 86.1 35 A.....C.T.TT........................ AACGGTGAAACTAAGAACAATGGTTATACGGCGAA G,A,A [1047154,1047156,1047159] 1047226 36 100.0 37 .................................... AGATATGAACTTACCAACACTTAAATATTTCAATAAA 1047299 36 100.0 37 .................................... TTATGAAGATAGGATTTATTCAATGGAAGAGCTTAAC 1047372 36 100.0 34 .................................... ACAAGGAAAACACGGAAGATTTTAACAACGATAT 1047442 36 100.0 40 .................................... AAATTAAAACAACAGAAAATGGCTTGGAAATTCAAGCTAG 1047518 36 100.0 36 .................................... CGAACGAAACAGGCAAAAGATTGAAAAAGCACTTAA 1047590 36 100.0 39 .................................... ATGAAAGTGAGTTTTATTATGAATCGTATTATTGAGTTT 1047665 36 100.0 36 .................................... CATTTCACCTTTTGAATTTATGTTGGAAGAAGATGT 1047737 36 100.0 34 .................................... CAAGCTATAAATGCAACAACTTTTTAAATTATTT 1047807 36 100.0 36 .................................... TTTAATTAAGGCTGCAAATAATAGGGACAAAAAAGG 1047879 36 100.0 38 .................................... TCATAGCATAATGCAAAGAGTTGTGCAAGTTCCTTGTG 1047953 36 100.0 41 .................................... ATACCAGATTATAATAAATATGTCACCGGAATAAGTGACAA 1048030 36 100.0 40 .................................... TTTGTAGCAGAAGAAGAGTTGTATTTTGATGATGAACTTG 1048106 36 100.0 37 .................................... GTGCAAGTGTTTTGTGAGATAAACTTTCGTAATTATC 1048179 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 99.1 37 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Left flank : GATCGGTCTTACCGCAAACGAGATAGATTTTCATATTATTTATATTTGAAAACATTTTGATCACGATACCAAAGATAGTTGTTCAAATTTTTGAGAATCTCTCTTAAAGCTCCATTGTAAATTCGAATTTCAACATCTTCCGTAATAATTTTCGCAGCCATTTCCCTAACTGGACGGTATGTTTCTCAAGGGCTTCGGTCAACAAGGTTGACTTCCACTACGTCATCCAATTTCATATTTAAACCTCCGATTATACTTGATGTTTAAAGCATGCCAAGATATCGGAGGTTTATGAGGAACGCTTATTTAAAGACCGCTTACGATGGGGCGAATATCAGTATCCTCTTTTTATATACGGAAAACGCACCTGTCGGATTCAAGTGCGTTTAGCATTGACGAACATATTGACTGCGTCTCATCTTTTCATCTTGGTTGTAGCACGAAAAACTCTGCTATACAAAAGCTTGCTTTAAATAACAGAATTATCCCGTATTTTTTAC # Right flank : CCGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTAAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGTACCAATGCATCGAACATCTATATTTTATCCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTCCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTAAGACATGAAAACCCGCTTTTCTATAAAATACAGAACTGCGAATCTCCTTCTCAATCAGGGCTCCAAGGAGGGATTACGGGCAAATTGCCGATTTCTTAAGATTTGATCGTAAATTCCAGTCTTCTACGAAGAATTATCCCGAATACACAAAGTCCCGGATGAAATTTGCAGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 1068634-1066221 **** Predicted by CRISPRDetect 2.4 *** >NC_015975.1 Ligilactobacillus ruminis ATCC 27782, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1068633 30 100.0 38 .............................. GTATCTGACGGGAACTTTTTTGTTTAAAATCTATTGAC 1068565 30 100.0 36 .............................. ACTGGCTAATACGAGAGCCAATGCAAAAATGAATAT 1068499 30 100.0 36 .............................. TTTACCTTTTGAGTAAACCGCTCTGAAATGGGTGCT 1068433 30 100.0 35 .............................. CTTCTTTTTTATGCTATAATTACAAATGTAAAAAT 1068368 30 100.0 37 .............................. GTGCTTCCGCGGGTGCAGCCATCAGCAGCAGACCCGC 1068301 30 100.0 35 .............................. TGGTATTATCGTGGGAGCGGAGTAAACATTGATTA 1068236 30 100.0 38 .............................. CTTTTTAATCGTGTTTAGACAGTCGGCTTCACAACTTG 1068168 30 100.0 38 .............................. CTTTTTAATCGTGTTTAGACAGTCGGCTTCACAACTTG 1068100 30 100.0 35 .............................. ACTGAAAGAACTGCTGAATGATCTTCCTGACCTAG 1068035 30 100.0 35 .............................. GTTACTAACTCTCTTGTTTTCAACGGGCAAACGAT 1067970 30 100.0 36 .............................. CACGGTTTGCAATAGCAAACTGAAAATAAAGAGAAA 1067904 30 100.0 35 .............................. TACAGAATTCAGGTAAGTATTCGGTGGAGAAACCA 1067839 30 100.0 35 .............................. TCAATAGTGACAATCGGGCGTGAAATCGTATTTCC 1067774 30 100.0 37 .............................. TTAACTAACTCAAAGTTTTTGCGCATTATATCCACCT 1067707 30 100.0 35 .............................. ACCATTGATGAACTTAACCAGTTTCAGAAAACATG 1067642 30 100.0 35 .............................. GATGACACGATTAAAGAAGCTCAAAAAGAGTTTAT 1067577 30 100.0 38 .............................. TTATAATATCCATAATCATATTGATTAAGAGTTTCATA 1067509 30 100.0 37 .............................. AAAGACAGCTCTTATGTTTGTACAGTCGCTTAACTCC 1067442 30 100.0 36 .............................. CGCCGCCGGCAACGGCAACTATTGCGACTGGTCAAC 1067376 30 100.0 35 .............................. TGCTAAAAAATATCCTTTGTGGTTAGCAGCATATC 1067311 30 100.0 35 .............................. GTTGCCGTCAACGCTGGTATTCCCATATCCTAACG 1067246 30 100.0 35 .............................. TTAGTTGTGACGAGACCGTCTTTGTTGTACTCAAG 1067181 30 100.0 35 .............................. TACTCAAGCTGAGTCAACTCTTGCGTGTAGTAGCT 1067116 30 100.0 35 .............................. TAACTTTTGGCCGAGTTTTGTTTTGGTGAAGAAGA 1067051 30 100.0 37 .............................. TATTATATCGGGTATGCTAAAGTTAAATACGGTGCGT 1066984 30 100.0 37 .............................. TCTTTGCGCAGCTCATCGACCGTATCCTGATACCAGA 1066917 30 100.0 35 .............................. AAAGACGCAAGCAAAGAAAAAGGCGAGTTACTGGG 1066852 30 100.0 37 .............................. TTTGATTGCATAAAAGCAAATGTATCAACAATGACAT 1066785 30 100.0 35 .............................. TATTACATTATATATTATAACTCTTACAAGCTAAA 1066720 30 100.0 35 .............................. TGTCCATACGGTCGATTTCTGCTTTAGGATCATCG 1066655 30 100.0 36 .............................. TCGTTTTTAACGTGGTAAACGACCTTCAGGACGTTC 1066589 30 100.0 38 .............................. TGCGCCAGCTTGAGGTCGTGGCTGATGCCTTTGTTGAC 1066521 30 100.0 36 .............................. TGACTAAAGCCTCGGAAATAGCTCAAGCGGCAAAGG 1066455 30 100.0 36 .............................. GTAAAGGGCGCTTTGTCACGTTCGATTTTTCAAGTT 1066389 30 96.7 40 .............................G TCGTATTTATCCATCAAAACGAAATTCTTTTGGCACTCAA 1066319 30 100.0 35 .............................. GACTTTGTAGCGGTTGAATCACTGTCGCGCGACAA 1066254 30 96.7 0 ........................T..... | C,TC,A [1066224,1066227,1066231] ========== ====== ====== ====== ============================== ======================================== ================== 37 30 99.8 36 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGTGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAACTATGGA # Right flank : GGTGACGATAAAAAAATAAAACAACGGAATCATATAATTTTAAATCGTTTTTAGCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCAACTGACGAACCCATAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGGGCTAAGATTGCCTGTTTCAACGCATCCTTTTCCTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACACAGCCCAGTGCGAACCTGTTCGTTGTCGTTTCTGTATCTTTCATGCGAAAAAGATATTTGGAATATGATTGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCAATCAGGTTGCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCAGTCCATCCAACTGATGAGCTCGTTTACGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTGTAGATGTGGATCAGTTCGCCGAGCGAAATGTGTTGCGAAAGCTCGAGAAGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //