Array 1 160725-162277 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAXN01000023.1 Streptococcus agalactiae strain NNA025 contig36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 160725 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 160791 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 160857 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 160923 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 160989 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 161055 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 161121 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 161187 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 161253 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 161319 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 161385 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 161451 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 161517 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 161583 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 161649 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 161715 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 161781 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 161847 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 161913 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 161979 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 162045 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 162110 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 162176 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 162242 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //