Array 1 993187-992616 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJMW01000001.1 Nocardia fluminea strain DSM 44489 Ga0074766_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================================== ================== 993186 31 100.0 50 ............................... AGCTGGGTCGGCGCGCACCACTCGCGAGGTACGCCAGCGCCACAGTCGAG 993105 31 100.0 51 ............................... GGCTGGCGTTGGTTTGCGGCAGTCTGGCGTCATGGTATGTGACCCGTCGAC 993023 31 100.0 44 ............................... GAGGGGGATCGGTCCGGAGAGGAGCCGAGCCTTCAGCTGTCGAC 992948 31 100.0 46 ............................... GGTCATCGACCCACAGATCGGAAAGAGTGATACCTGCTGCGTCGAC 992871 31 100.0 45 ............................... CCCTTCTGGACGTTGCTGCCAGCTCCGGCACCTACGGAAGTCGAC 992795 31 100.0 45 ............................... TGCACCATTTGGGTGAGGGTCGCCGCGTCGGTGGCCGACGTCGAC 992719 31 96.8 42 ..............A................ GGAGTACCCTCTTCGACATCGAGCCGGCTGTTGTTCGTCGAC 992646 31 77.4 0 ..................AA..CTG..T..T | ========== ====== ====== ====== =============================== =================================================== ================== 8 31 96.8 46 GGTGCGGTCTCGCCGAAGGGCGAATGGAAAC # Left flank : TCTCTCCGTGGCCCGATCCCGCCGCCGTGGCCCGCTCGCTCACCACCCGCTGGAACACCTTCAACCCCGACCCCACCCAACACTTCGACGAGGACCCACGCCTGTGGCGCCGCATCTGGGTCAGCGACGTCGAAGGCCACACCGAACTCCTGCCGCTGCCCGGTCTCACCGTCCCCGGCTTCCTCGGCCGTATCCGCTACCACTGCGACGACCCCGGAGTCGCTACTACACTCCACCGCCTGCTCCTCTTCGCTGAACTGGCCGGCCTTGGCCGCTACACGACCCGCGGTCTAGGAATCATCACCCTCGACAGTGGCGCAGGTCGCAACCCGGTGGTGAGCGGACCCCAGAAATCGCCCAGGTCTGTGCAACGCTCTGACCAGCGCAAACAATACAATTCAGACGTACCGGGAAGCCCCGCAGAGAGGGCCGGAGGGAGGTCTGTGCAATGACGGCACAACGTCGCAGGTCGGAGGGGATGAAAAACGGGTAGGGTCAGC # Right flank : TTGGTTACTGATTTCATGCGACTTCTAGGCAAGTGGGTCACTTCGCAGGGCTCCGTCAAAGTCGTATCTCAGCAGGCCATGAGTAGTTCGAACGGTCGGCTGAATTCGTGGGCGTAGTGGCGTAAAGCGGCAGCGATGTTCGAACGGCCGACCAGACGGACCAGGCTGATCGCGGTGTTGCGCAGAGTTGCGAAGACTTGCGGTGCGTGACCGGTTCGTGCCCGGCAGCGGTCCTCGTCGAAGGTGACGTCGCGTACCCAGTGCGCACGGTTCTCGATTCCCCAGTGCCCCCGCAACCACGTAGCGATCATCGTGGCCGAGGCATCGGAAGCAGTGAGAGTTGTTATCGCGTAGACGATTTCGGTGCCGCGCTTGCCTGCCTTGCGATCGGTGCGGGTGCGCGACATACGTAACACCCGCTCGGCACCGGGAAATCCGATTCCGGCGTCGATCGCGGTGGCCTTCAACATGCGGCGTTCCCGTCGGCCATGTCCTGACCC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCGGTCTCGCCGAAGGGCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1005119-1004420 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJMW01000001.1 Nocardia fluminea strain DSM 44489 Ga0074766_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1005118 37 100.0 36 ..................................... GTCAGAAACGCCAGTGCTGCCGCAACGATGAGCACG 1005045 37 100.0 36 ..................................... CGGTTGGTCTGGCGCTTCGCCTCGGTCTTCGGCTTC 1004972 37 97.3 35 ..................T.................. CAGATGCGCTGAGCCGGGGCGGAGGTCACGTGGGG 1004900 37 94.6 35 .......G........................T.... CTGAAGCTGAGCATGCCCGGACCGGTGAACGCATG 1004828 37 100.0 35 ..................................... CGATCAGTCGCGAACGTTCTCGTTTACGTCGATCC 1004756 37 100.0 35 ..................................... CAGACCGAGGTCCGGGTGCGAGTCCTCGCGTTGCG 1004684 37 100.0 39 ..................................... GATCAACGAGCGCACGGCTCTGCCTGCAGTCGAGGAATC 1004608 37 100.0 38 ..................................... TGAAGTCCTGCGAGATCCCGTACCCCAGATTCGTGGCG 1004533 37 97.3 40 ...........G......................... TCACGCCGGATCCGTTGATCGATGGTCCGTCCTCGGCGGT 1004456 37 94.6 0 ........A..G......................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 98.4 37 GTCGCCGACGCAGTCTCGCCGACAGGCGAATGGAAAC # Left flank : GCTGCGTTTACCAGGACCCGAGAAATACTGGTCGAACTGTTTCTGCGTCAATCGCCATGGCACACAATCGAAGTAGTCGCACACCTCGATAACTGGATACATGATCTGTTGCAGGGTCGACGGAGTCAGTCCCGCGACGTCTCGGGCCCATCCGTATTCGACCAGGGTGTTCCGGTAGAACTCGCGCTCGTCTACATCAGGATCGAGTCGCTGCAGCGACTCGACATCGGCTAGTGCCCGCGCCGGAGTAGCCGCGCCAGTCGGTGCCGAGTCCGCAGCAATGCGCTGCCTGCGACGAGTAGCGAAATCTGACACAAACGGTGAAGTTACGCAATCAACTGGCAGATTCCGCTAGTTGTGGGTGAAATCTGGGTGGCTACCGGATGAAGAGAACCACCGGCCCTGACCAGCGGTGCAGTATCGATACCAGGAACCAGCGAACGCCGGAACCCGCTCGAACTCCAGTGGCAAGGCCTCCCCCCCTCGGCCTGCTGCGGGGG # Right flank : AAGTCGGGGGTGGGCTACTGAGGAGGTCGGCGCAGATCTTGTGAACCGCCGTCGCGGTGGGCTGCCATATCTGTCTCATTAGGTCGTGCCCTATGGGGCACGCGTGTGTGGTGAACGAGGAGTTGTCCCGCTCATTCCGGGAATAGGGCTGTCGGTCGCTGGCGCCTACCGGTACGCGCTGCGCGAGCCGGTAGGTGCTAGCGGGGTCGGTGCGAGAGCCCGGATCCGGGGTCGGCGCGGCCGGATTCGGACGAGCGCCAGCCGCGAGCGTGAAATCGACAGTCCGGGTTTCGCCGCAGCGGCGGGGTGACCGATTCGGCGATCGTGGGGTCGGGTAGTGAAATGTGTTTGGAGCGGCACAGCATGTGAGCGGGGGCGCAGTCGATGGCGGCGCGTGCGTGGTGTTCATCCTCGCCGCAGATGCGGAGCACAGGGCTTGGAACGTGGCAATCCTTCAATCGCATGACACCCGTGCCCATGTCCTGCGAACAACCGATACC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCGACGCAGTCTCGCCGACAGGCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 1014187-1013868 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJMW01000001.1 Nocardia fluminea strain DSM 44489 Ga0074766_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 1014186 38 100.0 32 ...................................... GTGTTGCTACAGATTCTTGTCTCCGCCCTCAT 1014116 38 97.4 33 .....................................C AACTCCGGCGGGGCAATCCCCATCAGAACGAGC 1014045 38 100.0 29 ...................................... TTATCTGCCACCTGCACCAGACCGGCTTC 1013978 38 100.0 35 ...................................... TCTGAGTCTTCAGCACAGCGCGGTCACCGGGCTCG 1013905 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 99.5 32 GTCGCCGACGCAGTCTCGCCGACAGGCGAATGGAAACG # Left flank : CACGTCAGCCGAATTCATGACAATTAAATGGCAATTAAATGGCAATCGGACGCGGATCGGCCGGTACCGTCGGCACCATGACCAGCGGTGATACTTCAAGAGCGCAGACTCGATGAGATAGGCCCGTGGCGGCAACCGCATCCGTAGGTGGCTGCCATACGCAAGGATGCGCTTTGTGGGCTGCAAAGGGTCGAGTGCCCAGGTGTGGAGCTTGGCGCCGGTCTCACAATGTGCAAACTGCAGCGGTCCGCGAGGAGCGGTAGGCGCCTTGCTCGACGGGGCTGGTCGCTGCGGGATATGGCCCACAGGCCATAGACTGGTGGGGTGGATCACATCAGGGTGGTGGGCGAGGACTTCGGAGGCCCGAGGTCTGTGCAAGCGTGCTACCAGCAGAAATGGGGTTTTAGGCCAGCGTCGAGACCTGCTCTACAACACATTTGGGGAGGTCTGTGTAGGGAGTTCTCAAAGATACAGGTCAGAGGGGGTGAATAGTAGGTAGG # Right flank : GGATGCAACTGCGCGGGTTCACAGAAACTCGCGGACGATAGCGGCGCAACTCGCGCGTGGGTGGAGCATCAACCCCTGAGGGACAACCGCATTCGCAGACTGGCGACCATCAAACGCCTTCTGCGGCCGCCAGCACAGCCTCGCGTTGGATCCGGCAAAACCACTGCCGTCTACCGATCGGCTCCGGCCCACCCTTCCCTCATACCCCCACGGGTACTTGCATACCCCCCTAGGTATGTGTCACAGTAGTGATGTACCCGCCAGAAAGGACCGCCATGTGCTACCCCGTCCCGTGCCCGGCATGCGGTAAGACCACCTGGGCTGGCTGCGGTCGACATGTCGACAGCGTCATGAAGAACGTTCCGCGGTCGCAGCGGTGCTCCTGCTCCATGGAGACACCCGCCCCAGCTACACGCGACAACTTCTTTCGTTCCCTGTTTCGTCGCTGACCCCCACCCCAACAGCACTCCACTGCATTTCGCAGGAATCTCTGGGCGTCT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCGACGCAGTCTCGCCGACAGGCGAATGGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //