Array 1 257833-259029 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZAE01000003.1 Bacteroides faecis strain 2789STDY5834846, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 257833 47 100.0 30 ............................................... AGTATTCAGGACCGGGGACCGGAAAGTGCG 257910 47 100.0 30 ............................................... TATTTCCCTACCGTTTGCCTGCTTGACATC 257987 47 100.0 30 ............................................... TACTCCCTTTATAATTATCTGCTGTAGATG 258064 47 100.0 30 ............................................... TTCAGAGATATTGCGCATGAGAGGCATATT 258141 47 100.0 29 ............................................... CTGATAATGATCAAGAAGACCTCTGTAGG 258217 47 100.0 30 ............................................... CTCAGAAATGGGAAGAGTTCAAGATATACC 258294 47 100.0 29 ............................................... ATTTATAGATATTTGCATTAATGCATAGA 258370 47 100.0 30 ............................................... GCGGCTGCACCGTTGTTAAATGATCCCTGC 258447 47 100.0 29 ............................................... TTGTTAATTGTTATCTTTTTGATTACACT 258523 47 100.0 30 ............................................... TATCCATTGATTTGGAGTTACTTTCATGGT 258600 47 100.0 29 ............................................... ATCTTTCCCTGCTTAGGCGTGGTAAACAA 258676 47 100.0 30 ............................................... GAGATCTTCGCAGATACAGCAATCGACAGC 258753 47 100.0 30 ............................................... TTCTAGAGGCTTCACTGCGCTCGAGGCACT 258830 47 100.0 30 ............................................... TACAATCGACAAAGTTGCAAGCGTGATGTC 258907 47 100.0 29 ............................................... CTACACAACAATCGGACGGGGATTGGCAT 258983 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : TAAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCGCCATCTCTTTTTTTACGCAACTTGCTTT # Right flank : CCGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAAGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 10328-11255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZAE01000008.1 Bacteroides faecis strain 2789STDY5834846, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================ ================== 10328 29 100.0 36 ............................. TCTATCCCTTGCGCAATGACTCCCCACGACTTTTCG 10393 29 100.0 34 ............................. ACTAATGAAACATACTGGGAAGATGTGCTCTGGT 10456 29 100.0 35 ............................. ATCAGAACTTATACAACTTTATTCTTTAAGACAAA 10520 29 100.0 34 ............................. GCCGATATTGTTTAGCTGAATGTTATGCCCATTT 10583 29 100.0 36 ............................. TCATTTATAGCTCAACAGCCCAATGGTCTTTTCTGT 10648 29 100.0 35 ............................. AAGAGTATCCGAGAGAGTATATGTCCTTCCGGAAG 10712 29 100.0 36 ............................. TTTCTTCTTTCCCGTAAGGTATCAGACCTCCGTATG 10777 29 100.0 38 ............................. ATTAAAAAAGGTACACTATTCTCACGAACCATGTACCG 10844 29 100.0 35 ............................. GTTGAAAAAGAATTTGCAATAGTGAATAATGTTCC 10908 29 100.0 96 ............................. GTCGTTACCATCACGTTCGCCCATGTTCTCAAACTCAGTATTAATTGAGTGGAATTGAAACTTCCTTCAGCTAAGAAGAGAGACACACATATAACA 11033 29 96.6 36 ..........................G.. TCATCTCGAAGTAGCCGGCGTCAATGAACCTTTGTT 11098 29 100.0 36 ............................. ACTCCTGCAACGCTAGTAGGTAAATTGTCAACCGCT 11163 29 96.6 34 .................C........... CTGCTTTTCCCGCTGAAATATACACCCAAATCCG 11226 29 86.2 0 .................CAA......G.. | T [11248] ========== ====== ====== ====== ============================= ================================================================================================ ================== 14 29 98.5 40 GTATTAATTGTACCTAGTGGAATTGAAAC # Left flank : CCTTTTAAGATGTATTGGTAGAGTATGTATGTCATTTTAGTATATGATTGTGGTGAAAGAAGGGTGGCTAAAATGTTGAAACTGTGTCGTAAATATTTAAATTGGATACAGAATTCTGTTTTTGAGGGTGAAATATCTGAAGTACGCCTAAAAAAACTTCTATATTCAGCTAAAGAATTTATGGATGAATCTGAAGATAGTATTATTATTTTCAAAGGACCTAATCATAGCTCTTTGGAAAAAGAAGTAGTGGGAAAAGAACGGTGTAGTATAGATAATTTTCTGTAATTTAGTTGTCGGAGACTTTAGTAATGTTTCCTTTTTAAGGAAAATTCTTCTTAAGAGTTCTTTGACTTGTTGATTTACAGCAATATAAGTGTGGTGTCGATCTCCAGCACTTTTTGTACTTTTAGGGATCGACACTATTTTTGACCTTTAAATATCTTTTGGGGGATTGTAACTCATTCATTTTAAGTGGTCTTTGGGGGATTGATGGTAGA # Right flank : CATATTTCAATTGTTAATAATATATAAGACTTTTCTCTTATATATGGTTCAAATTACGTTTTGAATCTGCAAGGTACACATATTAATACAGTTGTAGGCCTTTATTGATTGTGGGAATATTGTTTTGTGTAATTACTAGATGAATAGTAGTTTTGGCTTTTTATTATTCTGTTATTATAGTTTGCGTAATAATGAAGATGATCCATTTTTACCACTCATAAGAAATACTTACCTGAGGTACCCATTCCCATTTCTTTCGTATGGTGTTGTATTGATACCGCACATCGGTCTTCAATTTCCAGCCTTTATTTATTTTAAGGATAATGTTGCTGCCCAAAGTAGTTGGTATCACTTCAGATGAAAGTCCCCGATATCTTCGGGCATCCAGATTTTGTTCACCATATATGCTGAGAGACCATTTTTTAGAGATGCTATAATCCATCTGAACTTCAACATGAAAATGGTCCGGATTTTCTCCAAAGTTACTTTTACTGTGCAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTAGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //