Array 1 31803-33283 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXFZ01000023.1 Clostridium sporogenes strain IFR 18/062 contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 31803 24 100.0 44 ........................ GAAATTTTTTTAAATTACCTGTTTCTTCTCCTATTCCTTTAGAG 31871 24 100.0 43 ........................ GAAATCTCGAATTGCAAAGTTCTATAATGTAAGGGTCTTGTCT 31938 24 100.0 41 ........................ GAAATATAAAGGTGTAAAATTTAACTCGATTAATAAGCTAG 32003 24 100.0 42 ........................ GAAATTCATTTGAACTCGTTTTTATTATATGTTCTAACATTG 32069 24 100.0 45 ........................ GAAATTATTGTTACTAAATACAAAGAGGGTTTATATGGCTAAAGG 32138 24 100.0 43 ........................ GAAATTTGGGCTAAATATTCTACTAATCCGCCTGTTTCGTCGC 32205 24 100.0 43 ........................ GAAATAAACTTCTTCTTTTAGCATTATCTTCTGTTTTATTCCC 32272 24 100.0 43 ........................ GAAATTACACATGCATTTTCTACACATGATATATCCTTCATCG 32339 24 100.0 42 ........................ GAAATATCTCTTAACATTTCCACTTCTGCATCAGTACATTTT 32405 24 100.0 42 ........................ GAAATTTTTAATAACTAATTTCTCTAAAAATAAAATAAGAAG 32471 24 100.0 41 ........................ GAAATCTAACATAGTTATATTTTGGGCTTTCAGCATCTTTA 32536 24 100.0 43 ........................ GAAATCTTTTTAACAATTTCTTATTATGTTTATTAATTTCTTG 32603 24 100.0 42 ........................ GAAATAATCTATAGTAATCATATCCCTTTAAACCTCCGTTAT 32669 24 100.0 43 ........................ GAAATAATATATCTTTCTATTATTTTTACTTTCGATTCTCTAG 32736 24 100.0 42 ........................ GAAATCAAGTTTTCATTTCCAATTCTGTCATGGTTTTTGCCT 32802 24 95.8 42 A....................... GAAATTTTTAAACTTCAAATATATCTTTTATTTCATACTCAC 32868 24 95.8 41 ................G....... GAAAATTACAAGAATTTTTATTTGTTGTAAAATTAAAATAA 32933 24 91.7 43 .........C.....C........ AAAATTTACTTAATTTAGGTTTTATGTTGACCTTACCGGATTT 33000 24 91.7 40 ............T........C.. AGGATATATTAAACATCAACCAATTTTGAGCTTGCACTGT 33064 24 100.0 41 ........................ AAAATAAATTTTCTATGTTCACTATTTTCCCAGCATGTTCA 33129 24 95.8 41 .......................C GAGATATTACATATGTAGCAAATGCTACAGCAACAAAGATT 33194 24 95.8 42 ...............C........ AGAATGCGCTTGCAGCTCTAAGTAAACATTTCTAAGTCTTAC 33260 24 91.7 0 A.............G......... | ========== ====== ====== ====== ======================== ============================================= ================== 23 24 98.2 42 GTTTTATAGTTCCTATAAGGAAGT # Left flank : TAAAGAGTTTTTAATCAGTATAAAGAATAATATAATAGCAAAATACAATTCATTTTATAATGAAGAATATAAAGGAATTTTAAATATAAGTATATTAGATGCAAACAATATAAGAAAGAAAATAGATAAATATAAGAAGTGGATATATGAAGGATATTTAGGTGGTTTTATAATAGAGGGAGATACTGAGATAGTAGAACTTGCTTATAGCTGTGGATTAGGTAGCAAAAATTCTCAAGGCTTTGGATGTATTGAGACATTTAAAGATCTTAATGGTATTAAAAATTATAGCAGAATAGTTTAAATTTAAATATTTTGCAGCGAGCTAACTTTTTTATTATATGTATATAAAGTATTGATTTAACTGAATTTTTTAAAGATTAAGTGGGTTTTATAAAAACATTACTGAAGGTTTACTGCAAAATCCATAGATTTAGGTGATTCTTAACATTGTTAAAAACAAGATGTAGCCTTATTTTATGGTAATTTTGAAATTGGGG # Right flank : TTAAGTAATTTTAATAATATTTAATTATTTGTATTATTTTTTATTGGGGGGAAATTTTTAATCTAACATAGTTTAAAATTTACTATAACAAATAAATACTATTAAATCCTTTATAAGTAAGTTTAAAAAGAATTGTTATTTGGTATAATGTATATAAGCGTAATTACTAATTAGTAACCTTAATTGATAATTAAGTATTGAGAATTAAACATATGTTAAGGAGGTGATAATATGGAGTTTGATATTTATACATTAGTAGAAAATGATGAAATAGAGTGTAAAGAGGCTTTAGGTGGATTACCTAAAGATTTATGGGAGACTTATTCAGCTTTCGCCAATTCTAATGGAGGAACACTTTTTTTAGGAATAAAAGAAAAGTCAGCGAAATTCTTTTTTACAGGAGTTAAGGATGAAGAGAACATAATTAAAGATTTATGGGACAATTTAAATAATCCTAAAAAGGTAAGTGCAAACATATTAGGTAATAATTCAATAGAGAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAGTTCCTATAAGGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 79806-74328 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXFZ01000006.1 Clostridium sporogenes strain IFR 18/062 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 79805 30 100.0 36 .............................. ATTTTTCATATGAGCATTTACGACTACAGCACTTCT 79739 30 100.0 37 .............................. CAATATATTGCCAACACTGTAACGTCTATATTTGAAA 79672 30 100.0 36 .............................. TTAAATATGTAATTAAAGTATCATATATATTATTCA 79606 30 100.0 37 .............................. CTGATTTTTGATTTATAACGTCATATATAAAACTTCT 79539 30 100.0 36 .............................. GATGGTACGAAAGTGCGTTATATAGACGATACAAAT 79473 30 100.0 37 .............................. TAAAATATTCTTGTCCGCTAACACCACCAACAAGTTC 79406 30 100.0 35 .............................. AAGAACACAAAATCCACGTTAGGGAACGAAGCACT 79341 30 100.0 35 .............................. TTACTTATCTGTACCATTGCTAATCCTCCCTTATA 79276 30 100.0 37 .............................. TATCCAAGTCTTTTGCCCTTTAACTCCCAAGTGAATT 79209 30 100.0 36 .............................. TTTTTAACACGTTCCATATTAATTCCTCCTTATTAA 79143 30 100.0 36 .............................. TTTTATAACCTTCTTTCCTCAGAATAATTTCATATT 79077 30 100.0 37 .............................. ATCATTAAATTCCATATACCATCTATGAAGTATATGT 79010 30 100.0 37 .............................. GATTTTGTGAGCTTAAAGGAGTAAATCCATCAACCCG 78943 30 100.0 36 .............................. ATTGCTGAATTACCTCTCCAGTCGTTAGTTATGAAA 78877 30 100.0 34 .............................. TCTATAATTAACAGTGAAGCTCCAAATCCTGTAG 78813 30 100.0 35 .............................. TTTTTAACACGTTCCATATTAATTCCTCCTTATTA 78748 30 100.0 34 .............................. CACCCTTTCTGTAAATAAAAAAAGACACATAGAA 78684 30 100.0 36 .............................. GAATTTGAAGTTAAAAAAGATGAAGAAGTAAGAGAA 78618 30 100.0 36 .............................. GAACGATACAATAGTATTAAAGTAGTAAATGATTAT 78552 30 100.0 36 .............................. GGGTAATATAGGCGTAACATCAAGTGGTTCTTTGCT 78486 30 100.0 36 .............................. TTTTCCTTTGGGAACTTATTTACTCGACAAAGGTGT 78420 30 100.0 36 .............................. TGTATTATAACAAGATAAATGAGGTAGTTAACAACG 78354 30 100.0 36 .............................. ACGATGTATTTAAAGATGTAGACACTACCTCAATAA 78288 30 100.0 35 .............................. TATCTCAATTGATTTGCTTCATTAAGGAATGTATT 78223 30 100.0 36 .............................. CATTGAATTAAAGAGTTATAAGCCTTAAAGTATTCT 78157 30 100.0 35 .............................. TAACTCTATCCATGTTGTAAATTGTGTGCATTATA 78092 30 100.0 36 .............................. CAATTAATTAATGATGTTATTTGCCCTAAATTAATC 78026 30 100.0 35 .............................. TAACTCTATCCATGTTGTAAATTGTGTGCATTATA 77961 30 100.0 36 .............................. ACGGACTTAACTTCACCCTCGTAATCATTATCTGTT 77895 30 100.0 36 .............................. AAAGTAAATTTCCATTGGCTATTAAAAAAATAATTG 77829 30 100.0 35 .............................. ATATTTTTAACGAATTTAGAATATATTTTCCTATT 77764 30 100.0 36 .............................. TTTAATACTTTGCTTAATTGTTTATATCCTATCTTT 77698 30 100.0 36 .............................. TATACATTCATTACTCTTCCACCTTCACATTTATAT 77632 30 100.0 35 .............................. CTATGTATGGAAAAGATGATTATAATTGGTTCGAC 77567 30 100.0 36 .............................. CCCCTTTCTCTAATTATAATTATACACTAACCTAGA 77501 30 100.0 34 .............................. GTTTAAAAAAGGTTTGTCAAAAGTTTGGCTTAAA 77437 30 100.0 35 .............................. GATGTTAAATGAATTGGGATCACTTTTTTATGTGA 77372 30 100.0 37 .............................. GGATATAAACATTGCAAAAATTGACATGTTAAACCCT 77305 30 100.0 34 .............................. TGCCTTTTTTAATAGCATTTACAGTACCATCATC 77241 30 100.0 36 .............................. CGTAAAATATTTAGTCAATAGTTTTCAGATAAATTT 77175 30 100.0 36 .............................. CATAAATTTCTTATATGATTTTCTAAAAAACTATAA 77109 30 100.0 34 .............................. TCTATTGCAAATAACCCGTTTAAGGCATATTTAC 77045 30 100.0 36 .............................. ATATCCTCTTTAGACTTTGGTTTTGGTGTACTTTTA 76979 30 100.0 35 .............................. CCTAACAACTTAATTAAAGATTTATGCTTTCTATT 76914 30 100.0 34 .............................. ATATAAATAAAACCCTAAAGGATTATCCTTTAGG 76850 30 100.0 35 .............................. AAAAACTATTGATGGTAGTTATCGCATGGTTTTAT 76785 30 100.0 34 .............................. GTTATTTGTCTTACAAAACTTGGTATACCATCAC 76721 30 100.0 35 .............................. ACCTTTAGATTATTACCTCAATTTGGATTCTTTAG 76656 30 100.0 36 .............................. TTTTGGCAGGTTTAGGACAAGGCACAGGAGATAAGA 76590 30 100.0 40 .............................. CAACAGAAGAAAGATTTCTTTATTTTCGACAACCAAATAG 76520 30 100.0 36 .............................. CCGATTCGCATTCCTGTCCAGAATAAGATATTAAAA 76454 30 100.0 34 .............................. AACCCCTTTGTAGTCTTATTTACAAAATTCACCG 76390 30 100.0 36 .............................. AGGTTACGTGCCTTACGCGAAGACAATGACCTAACT 76324 30 100.0 36 .............................. CTTATTTTTTGTGCTAATTGTATAGTTCCATCAATT 76258 30 100.0 37 .............................. CTCTATGCAATTGTTCTATTAAATCGTTAGCTTCTTC 76191 30 100.0 36 .............................. AGGTTTTAGGTGGGTTTATTATATCCTTTTTATTTA 76125 30 100.0 34 .............................. GAAGTGGTGAATTATTAGCCTTAACATATAAAGA 76061 30 100.0 35 .............................. GTATGTTAATAACAAGATAATAGAAGCATATAAAA 75996 30 100.0 35 .............................. AGGTTTGCCCCATCATTCGCCAACACTCTTAAATA 75931 30 100.0 36 .............................. TATGCTAACCTCTAATAAGAGGGGGTGTTCGATATG 75865 30 100.0 36 .............................. GATATTATAATTTATCTAGCAACCCAGTGGTTAAAG 75799 30 100.0 34 .............................. TAAAAAATATACTTTAAGAATAGAAATTCTTTTA 75735 30 100.0 36 .............................. AAACTTAACAACTCCAAGGTATATACGTACTTTTAC 75669 30 100.0 36 .............................. GTGTCAACTTTCTTTTTCTTTAACTCTGTATCTTTC 75603 30 100.0 36 .............................. TTATTTCTAACATCATCATTTCCTCCTTTTGAGTTT 75537 30 100.0 35 .............................. TTTGAATGCGTTAGCTAGTCCATGGGAACGTTGGG 75472 30 100.0 35 .............................. TAGGTTGTGAAGGTAGTTTTGTATTAAATAAAGTT 75407 30 100.0 36 .............................. AAGAGATTGTAATCTTGTTGCAGATAGTATAGTAGG 75341 30 100.0 37 .............................. TTGGTAGATAATTGGGACAAAGTAATTGTTCATGAAA 75274 30 100.0 36 .............................. TCTATTAAAAATATTCTTTCTTCGACTTTTGATTTC 75208 30 100.0 36 .............................. TTAAAATCATCCTTTTCAATTAACATACTTTTATTA 75142 30 100.0 34 .............................. ACTATAACAATAGATGGAATTACATATAATATAG 75078 30 100.0 36 .............................. TAAGGTTATGCAACAAGTAATTTGCAGAACAGATAA 75012 30 100.0 35 .............................. TGCCAGTGAGTTCTAAGCCCCTTAAAATTTAATAA 74947 30 100.0 34 .............................. CCAGAATATTTCATAGTATCATATATTAATACCT 74883 30 100.0 36 .............................. GTGGTACACTAGGGGCAATCATGAAAAGTTCTGGTG 74817 30 100.0 36 .............................. GATAGTAGGTACAGGAATTGAGAATAGTTATGAAAT 74751 30 100.0 34 .............................. AATTAAGATCGATGCAGTACAATGTTATGATTAT 74687 30 100.0 36 .............................. AGAAATGCATAATTTATTTATTGAAACTAATAATTT 74621 30 100.0 36 .............................. CTGTATATATCTTCTGGAATACTCAAAGTAATATTT 74555 30 100.0 36 .............................. ATGTAAAGAATTAAGTAAAAAGTTTGATGAAGTCAT 74489 30 100.0 34 .............................. AAAAGAGAATGTAACTAATGTTGAAACCTGGGAA 74425 30 100.0 38 .............................. TGTGTTTAGTAGAGAAAGTGATTTGAAAGAGCAAACAG 74357 30 86.7 0 A.......T.......G............C | ========== ====== ====== ====== ============================== ======================================== ================== 84 30 99.8 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ACTGTTGCTCGTTTTCAACAATTGAACATTAACATGAGATGTATTTAAATGATTTTGTGAGCTTAAAGGAGTAAATCCATCAACCATTGAACATTAACATGAGATGTATTTAAATAGCTTTCCATGTTTCTTTCCCTACAATACCATCTGCATTGAACATTAACATGAGATGTATTTAAATGAAAATCCTAGTTGAACCTTTGCAATGTAAAAAAGCATTGAACATTAACATGAGATGTATTTAAGCAGAGAACTCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCACAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGCCATTGATATATAAGGCTTAGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATG # Right flank : AAATTAAAATCCGTGATTTTTTCCTTTAAAGTTGTTTAGCTTTTAGAGTAGCGTTGATAATATATCAATTTTTAAGAGAAGTCATTTCTGACTTCTCTTAAGTGGTATTTATTTAATTCTATAAAGTATATTAATCAAAACTTATTTTTTTAAATGTACCTTTTTCTATATGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACAATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACGGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTCATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTTCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 80547-80059 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXFZ01000006.1 Clostridium sporogenes strain IFR 18/062 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 80546 30 100.0 36 .............................. GCCTGTACTATGTGAAAAGTTTTTTCTTTTTCAATA 80480 30 100.0 34 .............................. TTTTAAACCTCCTACCACATAACTTTTTTTATTT 80416 30 100.0 35 .............................. GTAAATCTAACACTCTCTTTTGCTTTTTTGTCTCA 80351 30 100.0 36 .............................. TGAGATAGGGCAAGAAACTGTTGCTCGTTTTCAACA 80285 30 100.0 35 .............................. GATTTTGTGAGCTTAAAGGAGTAAATCCATCAACC 80220 30 100.0 36 .............................. AGCTTTCCATGTTTCTTTCCCTACAATACCATCTGC 80154 30 100.0 36 .............................. GAAAATCCTAGTTGAACCTTTGCAATGTAAAAAAGC 80088 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.2 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAAGGAGAAGATGTAGATGGGGAAAGGATTTAATTATAATTATGCCTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCGAACTTAATATTATTGAAAAGGGATTTAAATAGAGAAATAGATGAATGTGAAGATTTTGTATGTATTATAAAGTTAATGAATAACAATGTTTATGGAGAAGAAATATTAGGAAATAAAGGAATAACAACAGGGGAAGATCTAATATTATAGAAAAAATAAAATTGATTTTTCCAGCCAGTTTAAATTTTAAAATCTATCTTAATATTTGCAACATAAGGCTTAAGATAGGTTTTTGTTATGTTTTTATAAAAAAATAAGAACCAGCTGGAAAAATTTCTTTAGAACTTTGTAAAATCAATGGTTGTGTGATATTCTTAAAATAAGGAATAGCTATTTTACTATG # Right flank : AGAGAACTCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCACAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGCCATTGATATATAAGGCTTAGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATATTTTTCATATGAGCATTTACGACTACAGCACTTCTGTTGAACAGTAACATAAGATGTATTTAAATCAATATATTGCCAACACTGTAACGTCTATATTTGAAAGTTGAACAGTAACATAAGATGTATTTAAATTTAAATATGTAATTAAAGTATCATATATATTATTCAGTTGAACAGTAACATAAGATGTATTTAAATCTGATTTTTGATTTATAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 91536-90117 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXFZ01000006.1 Clostridium sporogenes strain IFR 18/062 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================================= ================== 91535 30 100.0 36 .............................. TATTTGGTGCGTTCTTCATAGCCACTCCAGTTATCA 91469 30 100.0 35 .............................. CAACATGAGAGACGTGTTAAGTAATATGTAAGGAG 91404 30 100.0 36 .............................. TAACCAGTAAAAAGGCTATCTTCACAATTTTGTAAA 91338 30 100.0 35 .............................. GAATGTAGAGCATTAATTAAATGCAAAAAGAATTA 91273 30 100.0 37 .............................. ACGTTTGCTGGGGTGTGTTAATATCTAATTGTTCAAG 91206 30 100.0 34 .............................. TAAGCATACTTTTCGATACTATCTATTTAGTTGT 91142 30 100.0 36 .............................. GTTATTGGTGTGTGATTTAACTCCGCAACTGCGGAA 91076 30 100.0 34 .............................. ACTAATGGCTCTATATTAAGCAGTATTTTATTGT 91012 30 100.0 35 .............................. AAGCATCTGTGAATACATTTCCTGCGCCCGCAGCT 90947 30 100.0 36 .............................. TTAAATATTTTATAAGTATACTTTGCTTTTATATTA 90881 30 100.0 35 .............................. TAAGTTATCTTTATTAACTGTTTAACTAAGAGTCT 90816 30 100.0 35 .............................. TAATTAACTGTCTTATCTGGCGTATATGTGTTACC 90751 30 100.0 35 .............................. TCAACTGTATAAAACATTTTAAACACTCCATTCTT 90686 30 100.0 34 .............................. AATATATTTCTAATTGTTCAGCCATTTAATCCCT 90622 30 100.0 36 .............................. GAATACCGTTATTGGTGGCGACTGCAATTCCTTCAT 90556 30 100.0 35 .............................. ATGTAAAAATACCTTAGAACCATTAAGAGAATTAA 90491 30 100.0 35 .............................. GTATTAGAGCATAGAGCAAATAACCCTTCATGGGC 90426 30 100.0 35 .............................. TTTGTTTCTTCTGCTAAATCCATAAGCTCTTTTAT 90361 30 96.7 36 ....................A......... TTTTTAGCCTTAGCTTGTAATTCCTCATCTATCTCG 90295 30 80.0 119 ...A....A......GA......C....G. AGAGAACTCAACTCTATAATGTGTTATTAATCATGTACTCTTTATAGATTATAGAAAAAATGTCTATAAATTAATAAATAATTTAATATATTGATGAATTATGATTAATATGGTAGACT 90146 30 73.3 0 TA.ATTT.A.......A............. | ========== ====== ====== ====== ============================== ======================================================================================================================= ================== 21 30 97.6 40 ATTGAACATTAACATAGGATGTATTTAAAT # Left flank : CAGTAACATAAGATGTATTTAAGTTTAAAAGACCTCCTTTCTAATCGACACTACCACCTATGTTGAACAGTAACATAAGATGTATTTAAGTGTAGGTAAATCTTTTATAGCTGTTGCACTTAATCTAGTTGAACAGTAACATAAGATGTATTTAAGCCTATTCTTATGCAAAATCCATTTTTTTCTTTATGTTGAACAGTAACATAAGATGTATTTAAGCATGGAACCCAAATCTCTGATTTCACGTGAGTCGCTTACTCCTCCGAGAATAGGAGAAGGAGTTTCATTAATAAGCATAGCGCATATCTTATATTTAATTAAATTTTTCCAAGTGAATTCAATTTTAAAACCTATTCTAGGTATTGAAATGTAAGGCTTAGAATAGGTTTTTATTATGTATTTTAAAAAAAGCAAAATCACTTGGGAAAACTTCTACAAAACTTTGTAAAATCAATGGGTATGTGCTATTTTTTTAAATGAGGAATGGCTATTTTACTATG # Right flank : ATTCTTGTATTTATTATTTAATTTTAACCATAACATAAGATGTTTAAGAGCTATGTAAAAATTATTTTTTATGTGGCTTTTTTTATTATGATTTTATAAATTATTTTTATATATTAAAAAACGTTAAATATACTTATATAATTAAATTTTTTACATTAAATTCGTGTAAAACATTGGCAAAAAAAACTATAAATGGTATTGTATGATTATACAAAGAATTTTTATGAAATATGTTTTCTAATCATGTTAAAATTTCAATTCTAGTATTTATTATTTAAAAAAGGTGTAAATATGAGAGGAATAATAACAAAATTTATTCAAGACAATAAGATCTTTGTACTTATAGTAGCATTATTAATTTTTTCTATTTTTAACAAGAACAAAAATATAACTTTATTAAAGGGGGATAAAAAATCATTTTTCTATTTTTCTATGTCCAATAACAGTGAAAACATATAAAAGTAGAAACCTTTTATATGTTTTAAAAAATAAGATATATG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 92565-91817 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXFZ01000006.1 Clostridium sporogenes strain IFR 18/062 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 92564 29 100.0 36 ............................. ATTGCAAAGAAATTGAGAAAAAAGTATTGACACATG 92499 29 100.0 36 ............................. ACAAGAATTTATTTATGAAAATGAAGATTTAAAGGA 92434 29 100.0 36 ............................. ACCAGTTACGTGTAGGTTGCCACCAACTTGAGCGTG 92369 29 100.0 37 ............................. ATAACGATATTCTTATAGTTGAAGATGATCCTTGGAA 92303 29 100.0 36 ............................. AAACATTGTGACTTCACTCTATGCAATTGTTCTATG 92238 29 100.0 35 ............................. TAATTGAACGTTTAATATTGTTTTTTCTTGTGTAG 92174 29 100.0 37 ............................. TGCTTTAAATAGAACTTTAAGATATACATTTACTCAT 92108 29 100.0 38 ............................. TTTAAAAGACCTCCTTTCTAATCGACACTACCACCTAT 92041 29 100.0 38 ............................. TTTAAAAGACCTCCTTTCTAATCGACACTACCACCTAT 91974 29 100.0 37 ............................. TGTAGGTAAATCTTTTATAGCTGTTGCACTTAATCTA 91908 29 100.0 34 ............................. CCTATTCTTATGCAAAATCCATTTTTTTCTTTAT 91845 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 100.0 36 GTTGAACAGTAACATAAGATGTATTTAAG # Left flank : AAAAGCCTACATTCACGTATTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTCAGATTTGGTGCGAGTCGCTTACTACTTCGAGAATTGGAGAAGTAGTTTCATAAATTAAATTTTCCAACCACAATAAATTTAAAAAACTATTCTAGCTATTGATATATAAGGCTTAGGATAGGTTTTTATTTTGTATTTATAAAAAAACAAAATCACTTGGAAAAATTTCTTTTAAACCTTGTAAAATCAATAGTTATATGCTATTCTTAAAATTAAGAAATGGCTATTTTACTATGG # Right flank : CATGGAACCCAAATCTCTGATTTCACGTGAGTCGCTTACTCCTCCGAGAATAGGAGAAGGAGTTTCATTAATAAGCATAGCGCATATCTTATATTTAATTAAATTTTTCCAAGTGAATTCAATTTTAAAACCTATTCTAGGTATTGAAATGTAAGGCTTAGAATAGGTTTTTATTATGTATTTTAAAAAAAGCAAAATCACTTGGGAAAACTTCTACAAAACTTTGTAAAATCAATGGGTATGTGCTATTTTTTTAAATGAGGAATGGCTATTTTACTATGATTGAACATTAACATAGGATGTATTTAAATTATTTGGTGCGTTCTTCATAGCCACTCCAGTTATCAATTGAACATTAACATAGGATGTATTTAAATCAACATGAGAGACGTGTTAAGTAATATGTAAGGAGATTGAACATTAACATAGGATGTATTTAAATTAACCAGTAAAAAGGCTATCTTCACAATTTTGTAAAATTGAACATTAACATAGGATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //