Array 1 58095-60109 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVZ01000001.1 Citrobacter koseri strain NCTC11076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58095 28 100.0 32 ............................ TGCACTCTTCCATCAACAAGATACACCAGAAC 58155 28 100.0 32 ............................ ATTGACGCCAACTTGTCTTCGTTACCATCGTG 58215 28 100.0 32 ............................ TCACGAATTGTATAGCCGCCAGTGTCCGTAGG 58275 28 100.0 32 ............................ GCTCCGGAGACGTAACCGGAACACAACTTAAA 58335 28 100.0 33 ............................ AGTCAGCGCTGACGTAGTACCCATAGAATGTGC 58396 28 100.0 33 ............................ CCGGACGAACCGGGCGAAGTGGTAGCAATGGGA 58457 28 100.0 32 ............................ AGCGCATTGCTACGCACCAGTTGCACTTCCAG 58517 28 100.0 33 ............................ ATTAGGTATCAACGATTCCTGGGGGGCGCACGG 58578 28 100.0 32 ............................ ATAGTCGGCGGCCATTGCAATTTATTGGCGCT 58638 28 100.0 33 ............................ CCAAAAGGTATACTCTCATACCGTTATGAAAGG 58699 28 100.0 32 ............................ TTTACCTGATTGGTAATAATAAACGCATATTC 58759 28 100.0 32 ............................ TGGAGCGCCACTCTTATTGTCAGAGCGAACGG 58819 28 100.0 32 ............................ CAGACTGCGGAGCCGCTTTCGCTGGTTCCCGT 58879 28 100.0 32 ............................ ATATTGTGCTGATGGGGGACTGGAACAGCAAT 58939 28 100.0 32 ............................ TCACTGATACTCCAGGTTCGGGCGACCTGCTG 58999 28 100.0 32 ............................ CAACGGCATGGTTAATATTTCCCAGGCGGTTT 59059 28 100.0 32 ............................ ATTACGTGAATAACCCCAACTTGATGAGCCGG 59119 28 100.0 32 ............................ GAAACCTGAAGTTGTGATGTTACATTCAGCAG 59179 28 100.0 32 ............................ GGGTAATGAAGTCTGGTTTCCGTGATGGCGTG 59239 28 100.0 32 ............................ GGTGGCCTGCGCTGCGGTAGTCGTCATCATTA 59299 28 100.0 33 ............................ ACTTACGCGCCATGTAGTCGGGCATATGACTAT 59360 28 100.0 32 ............................ TTTGGGCGTGGCTGTGCTGTGCTGGTGGATTC 59420 28 100.0 33 ............................ GCGCGTCTGCATACCAATAAGGGAATGCACCTT 59481 28 100.0 32 ............................ AGTGAGAGACGTTAACCGCATCATAAATGAAT 59541 28 100.0 32 ............................ AGCCGTTAGGCTGCCCTACCACACTCACCGAT 59601 28 100.0 32 ............................ TCCATTGCTCACCGAACGTGAAGCCGATCTCC 59661 28 100.0 32 ............................ CGTATGTCTCCACCAGCGCAATATCTTTGCTG 59721 28 100.0 32 ............................ TTGTTAGCGTTGAAGCAAGCCTGCTGTAAGGC 59781 28 100.0 32 ............................ ACGCTCGATAAAGGAAGGGATGGCCTGTGTAA 59841 28 100.0 32 ............................ TTATTTGTCGGGCACAATAAATGTCGCCTCAA 59901 28 100.0 32 ............................ TGAATCTGCGCCAGCAGGAATACTGCCATTTC 59961 28 100.0 32 ............................ TACAGGAGCGGAGAGTGCTCGTGTCAATATGG 60021 28 100.0 33 ............................ ATATTGCAGGTCGCTGGACTACGCAACCCGTTC 60082 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCAGAAAGGCGTCTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCAGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCACTGGTTGGCGGTGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : ACCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCAGACCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCCAAACGCGCCAATATATATTATCTTGAAAAATGTCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGTTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71679-72307 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVZ01000001.1 Citrobacter koseri strain NCTC11076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71679 28 100.0 32 ............................ AGCCATTCATTTGATGCGGACATTATCCTTAC 71739 28 100.0 32 ............................ TCGGGCTACTCAAACGATTCGAGTAAAACTAA 71799 28 100.0 32 ............................ CAGCGCCGCCAGCGTTCTGATGTTTTCGATGG 71859 28 100.0 32 ............................ AGGCACATTCAGGTAATCAGCCCATGGCGTTT 71919 28 100.0 32 ............................ AGCTACTGCAACCACGATGCCAATCACCGTAC 71979 28 100.0 32 ............................ ACCAGCATCATTGAACCGACGGCGCAGCAGTT 72039 28 100.0 33 ............................ AGTCACGCAGAGCAAGACCGTTATCCCACTTGT 72100 28 100.0 32 ............................ GCTGGTGTGCTTAATGGTGATGCTGGCGACCG 72160 28 100.0 32 ............................ AGTTATGAGCTGGCTATTGGGTGCGAAAGCAC 72220 28 96.4 32 .........T.................. GTAACGTCCAGTCTGTAGCGTTATCGACAAAA 72280 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACCACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGTTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTGTTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCGCTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAGGATTAAAACAGAGCGCAATATACCCTTTTTTATTTTATGTTACTAACCTATTGATTTTATTGTATATATATAACTTGGGTGAAAAAGGGTCTGACAGGAAGAAGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTTAATGTAGAAGGAAGGGACGCAGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //