Array 1 17827-16670 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXX01000038.1 Neisseria meningitidis strain NM1931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17826 36 91.7 30 ....T...G...A....................... AACGGCAACCCACTAAATTTTGCAAATGCG 17760 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17694 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 17628 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 17562 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17496 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17430 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17364 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17298 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17232 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17166 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17101 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17035 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 16969 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16903 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16837 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 16771 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16705 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTGAAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //