Array 1 1675-2198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000005.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1675 30 100.0 37 .............................. CTTTTTTCCAAGTCAAGAATATAGTTTCTGTAATTAT 1742 30 100.0 37 .............................. CTACAATATTGTTGATGAATATGTAAAAATTAGTGAT 1809 30 100.0 39 .............................. CCCAATATAATGGTGACCCAGAAGAATTCCAACATTATT 1878 30 100.0 36 .............................. CTGTAACGCCTTTAGTTACTAATGTATCTATAATAT 1944 30 100.0 34 .............................. TCATTTGTGGCTTTATAGCCTTATTTAAATCTTC 2008 30 96.7 17 ................A............. TTAATTACTAACGTATC Deletion [2055] 2055 30 73.3 33 CCCTGCT.........A............. CAGAAAAGAGTATAAAAGACAACTATATGTAGA 2118 30 96.7 21 ................A............. TACGTACATATATAAATTAAA Deletion [2169] 2169 30 86.7 0 ................A......A....GA | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 94.8 32 ATTAAACCTTAACACTTTGTGTATTTAAAC # Left flank : TTTTATATTACAGGCTTTAATCTCCATCCTACTTACGTTGAGGATGGAGTATTTCGCCTATTATTGATAAATTATATATCTTCTTCTTATTTAGATTAAGTTCATCCCACCTTACATCTTTAAGCAATCCCCCTTGTCGCTTTACTGCTTCTATACACATCTTATAACTTTGCTTTTGCATGTGTGCCAATCCCCAGGGGTATTTTTTTATCCACTCTAAATCTGTTTTACGCATTTACCTATCACCTTTTTATTTTCATAACATTATATATTATACTTTAATTTTATTTATAATAATCATACCATTTTTATTGTTTATATAAAATATTATAAGTTAATTTACTTAGTGATATAATATAAATTATCCCAAGCTAATTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTAGTTGGGATAAAAAGCTCATAGGAATTGAAACTACTGAATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AAGAAGCTATCTATTAATTTAGATAGCTTCTTCTTAATATTATTCAAACTCTTTTAAGAAATCAACATAAGTTTGTCTATGAACATTAACACCTTTCTCTAAATCAAATCCACCATCTTCATTATAGATTCTATCAATAAAAGTCTCTTTGGTAATTTTATATTGGCAACCTATTGTAAATAACCACTTATTATATCTTTTTACTGCGAATACTTCTCTGGCCTTTCCTTGCTTTTCTAAATATTTAACACCAAATTCATCTAAATACTTTTCTTTAGCATTTACATACTTAATTGCACATATATTCTGCTTTAAAGCTTCTCTGCATATTTCATCAATCTGTTTCTTTGAGAATCCATCCCATTTTATATACTCTAAAGCTAATCCATTTTGCTTGACTGCCTCTAAACATATCTTTGGTGTTTGTTTGTTTACATATTGTAGACTACTTCCATTTTGCTTGACTGCTTCTATACAAATTTCTTCGGTTTGATTCTTTA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTTTGTGTATTTAAAC # Alternate repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 3332-3846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000005.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3332 30 100.0 35 .............................. ATAACAAAAATAAATAGGAATAACAAAATTCGATA 3397 30 100.0 35 .............................. TTATTATCAAACCATATATCTCTATAGATACCCAT 3462 30 100.0 28 .............................. TATATAACAATCTGATTTATCTACAGTG 3520 30 100.0 36 .............................. ATAAATTCAAAGGGGGATTGAAATGAAAATAGTAAG 3586 30 90.0 31 .......T......C...G........... GCTATATACTTCATTTAGCTTAGTATTCATC 3647 30 93.3 28 ..............C...G........... GATTATAAATAATCCGAGGATGGTGAAA 3705 30 90.0 29 ..............C..CG........... ATCGCAACTACACAAAGATATATAAGAGT 3764 30 90.0 23 ..............C.T.G........... ATAGAGAGCATTAATTTGCAAAA 3817 30 80.0 0 .......T......C...G....A.A...A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 93.7 31 ATTAAACCTTAACATTATATGTATTTAAAC # Left flank : AATTCATCAAACTTCACATATTTAAGAGTCCCACCATCTTTGAATACCGCAATAAGATATAGATTATATAACTGTTCTTTAGTTAAATTAAGTTCATCAAATCTTACATCTTTAAGTAAATATCCATATTGTCCTACTGCTTCTATACACATTTCATAAGTTTGCGTTTTTGCAAATTTTAAATCCCATGGAAATTTTCTTATCCACTCTAACCCTATTTTCTCCATTTATCTATCCATCCTTATTGTTATTTTTTATAATACTTTTTTATATATAATATACTATTTTTCAATTTTATTTATCATAATTATATCATTTTTATTGACTATATAAAATATTGTAAGTTAATTTATATAGTGATATAATATAAATTATCCCAAGATTATTAATATAATACCTACTTTCTATTTTTAACTATTGGTTGGGATAAAAAGATTAAATTAATTGAAACTACTGTATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGTG # Right flank : AAGAGCTATCTATTAATTTAGATAGCTCTTCTTGTATTATTCAAACTCTTTCAAGAAATCAACATAAACTTGTCTATGAACATTAATACCTTTCTCTAAATCAAACCCTCCATCTGTATTATAGATTCTTTCTATAAATTCATCCTTAGTTATTTTATATTGGTAACCTATAGCAAATAGCCACTCCCCATCTTCTTTTATCGCTATTACTTCTCTTACTTTACCATGAGCTTCTAAATATTTAATCCCAAACTCCTTTAAGTATTTTTCTTTATCTATTATATACTTTATTGCAAGTTTATTTTGTTTTAGAGCTTCTTTACATACCTCATATATTTTATTTTCTACATATCCAAGAGCTAATCCATTTTGCTTGACTGCTTCAGTACAAAGCTCATTAGACTGTTCTTTTACATACATTAAAGCTAATCCATTCTCTTTTACTGCCTCTAAACATATTCCTGGAGTTTGTTCTTTTACATCTTCAAGAGCATATCCAT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACATTATATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 7111-7732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000005.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7111 30 96.7 35 .............................A CATCTTCCTTTGTAAAATCATACTCACTAAGAATA 7176 30 100.0 36 .............................. AATATCTGCATATGTAACAAGTTATGCAAGAATTTT 7242 30 100.0 36 .............................. TCTTTTTCTAAGAACATTGCTAAAGGTAGATTTTTA 7308 30 100.0 37 .............................. AATACTTTGTTTAATTTACTATAAATATCATCTTCAA 7375 30 100.0 35 .............................. TCAAAATCTACAATTATTCCATATTTTTCTTTTAA 7440 30 100.0 36 .............................. CGAGTTCAAACAACAAGGTTTTATTGATATTAGCAT 7506 30 100.0 36 .............................. CCAATAGTTTATTCTATAGTAAAAGAAATACTTAAT 7572 30 100.0 36 .............................. AAAGAGGTTATACCTATTTTTATTTTTTCTGGGTTT 7638 30 100.0 36 .............................. AAACATTACTAATGAAAGGGTATTAGAATTTACATA 7704 29 83.3 0 ................T......-AA...G | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.0 36 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : TATTTTTTTCATTTTATTTCCCTCCATATCCCCTCTATTTATAGTAAACATTATATAATACATACTATAAAAAATATGTAAAATATTGTCACTTAATTATAAATAAGGGAGTCTATCTATTTATATAAGTTTTTTTATAAAAAAACTGTTCTATTTTCTTATTTTAATAGTAATTTTTTTACCAATACATTATATACAAAACAATTTATCTTATAACATCTCTTTCGTGAAAGTTGCCTTTTTATATAATATTAACTTTAATTATATAATATGTATTTATTTGGAAATTGTCAATATTTTTAATGAATTTTATTGATTATATAAAATATTGCAAGTTAATTTATATGGTGATATAATTAAATTATCCCAATCTAATTAAGGTATTTATTGAAATATCTATATTCTTATTTTTAACTGTTAGTTGGGATAAAAAGCTTAGATTAATTGAAGCTACTGTACTATAAGCATTTCTAAAATTAAGAAATGGCTTATTTACAGCT # Right flank : GAAGTTACCTATAAATTAGATAACTTCTTTTTATTTATATTATTTATTATAAATGTCTACATAAACTCCCATGCTTCCATTTCTAATTTCGACTTTCTTGCCATCCAACTGTAAAGTTTGGTCTTCGAATTTTCCTTTTACAATATTAAAAAGTTTTTCTCCTTTATTTGGCAGAAGCAACTTAAAGCATTCTTTTACAGAGCTATCAAATTCTTTGGAATTGGCAAATAAACCAAATCCAACTACATCGTTTTCTGCATTTACAATTCCCATTTCTACGTCCCAATCACCTTTGTCAGTTTTTTGCTTATATACATATGTTGTTTTGCCATCTTTCATCCAACCTAAGTCTTCCAGTTTATTTCTAAACACCTCATTGCTAACACTCAAATCCACATCATTCTTATCTTCTTCTTTTTTATCCTGGTCCTTTACATTTATAGCATTAATTTTAATTCCATTATTATCTTCTTTAAATCCTAAATAATTAACCAATATTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 12653-12437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000005.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 12652 28 92.9 38 ..A.....T................... TTATTGTAATTTCTCCTTAAATTTTTTATGAATCTTTG 12586 28 100.0 24 ............................ TCTACTAACGTATTAGTGTAGTTG Deletion [12535] 12534 28 96.4 42 ............A............... TTTAATTATTGCATCAAAAAAATTGAATAAAAAAAAGACTAA 12464 28 89.3 0 ............A....C.......A.. | ========== ====== ====== ====== ============================ ========================================== ================== 4 28 94.7 35 TTTAAATACACATAGTGTTAAGGTTTAA # Left flank : ACTGAAGTAGCGTGTCCCCTTTTGCCTTTTTTATGGAGATCTGATTGATATTGTATATGATACAAAAAAATAAGAGGGTGGTGATTATTATTAAAAGTTTAAGATGTATATTTAGGCACCTGTTTTCAAGAGTTAAAGATTGTGAGCTGATTACAACAAGAAGTCAGCAGTATACTTGTAAGATTTGGATGTGTAAACATTGTGGACAAATTGTAGCTGGCTCAACACCTGTATATCATCCTAAAATGGAGAAAAACGAATACTATATAAAGTGTGATCAATTAGCATGTGCTAAGAATGATGAAGGATATTGTAATTCTAAAGATAAAGAAATTGAGTTTAAATCGGTTTGTTTAGATGATGGAAAGCAGTTCTTAAAATGTGAAAATTTTGATTGGGAATAAAAAGAGAATAATGAAACCATATATTATGATGATAAGAAGTTGATTTTTAGGGATGTCTTTTAATTTAGATATCCCTATTTATATAAAAAACTATAC # Right flank : ATAATTCATTTCTTAATTTAAGAAATGTTCACAAGATAGTAGTATTACCTAATCTATAGTTAAAAATAGAAAGTAGGTATTGCATTAATAATCTTGAGGTAATTTAATTATAGCACTAAGCTAATTTATTTACAATATTTTATATAGTCAATAAAAATGTTATAATAATTATAAAAAATAACAAATAATAATATACTTATTACAAAACATAGTGTTATAAATATAAAAACTAAAAAGGAGATAGATAAAGGAATGTTATGTGGAGGAAGTATATAAATTTGATATTAGAAATAGATATTCAATATTATAGGAGGAAAGAATTATTATGAGAGCATTATTAAATATGTATGACAGTTGTTCAGAAAATGTTGAGGTTAAGGTAGGCGATTATGTAATAGCAAATATAAATGACTTTGGATTAGAAAAAGGTAAAAAGTATAAAATTTTAGGTATCGATTCTATAGATTTAATAACAGTAGAAGTTAATGGGTGTGCACATG # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:-0.19, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACACATAGTGTTAAGGTTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 17585-18081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000005.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 17585 30 100.0 38 .............................. CTTCTTTTATTAGCATGGTGAGTTAGGCAAATTTTAAA 17653 30 100.0 36 .............................. CTATCATTGTGGTGGTTATCCAGCTCATCTACATAA 17719 30 100.0 36 .............................. AATCTTTCTACCATAGATAAATACCACCTTTAATAT 17785 30 100.0 37 .............................. GTTGCATTATTATTATATACTATTGATATATTTAAAG 17852 30 100.0 37 .............................. CCTATTTTTTTTCTTTCTATTACATAATAAGAAGCTT 17919 30 96.7 37 .................C............ TATAATTTAGGTCTTATATTTTCTTTTGGTCTATCAA 17986 30 100.0 36 .............................. AATGTATCTAATTCATTTATTATAATATTATCCATT 18052 30 90.0 0 .......................A....GA | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 37 ATTAAACCTTAACACTATGTGTATTTAAAC # Left flank : CATAACATATTCCAGAGCATATCCAAATTCTTTTACTGCTGTAAGATATAAATTATAAGTTTGTTCTTTGGTTAAATTAAGTTCATCAAATCTTACATCTCTAAGTAGCATCCCCTCTTTTTTTACTGCCTTTATACACATTTCATAAGTTTGTGTTTTTGCATTTTTCAAATCCCATGGATGTTTTTTTATCCAATCTACATCTATTTTTTTCATTTGACTCTCCCTTTTTAAATTTTATTTTTATAACACTTTTATTTATATTTATTATATTATTTTTATTTTTTTTTATAATAAGTATATCATTTTTATTGTTTATATAAAATATTGTAAGTTAATTTATATAGTGATATAATATAAATTATCCCAAGCTATTTTATGTATATATTGAAATATCTATATTTTTATTTTTAACTATTATTTGGGATAAAAAGCTTAAATTAATTGAAACTACTATATTATAAGATTTTCTTAATTTTAGAAATGGCTTGTTTACAGCT # Right flank : AAGAAGCTATCTAAATTAATAGATAGCTTCTTTACTATTCAAACTCTTTTAGGAAATTAAGATATATTTGTCTATGGACATTAATATCTTTCTCTGGGTCAAACCCTCCACCTTCATTATAGATTCTATAAATAAAAATTTCTTTGCTAATATTATCTTGACAACCTACTATAAATAGCCATCTCCCATCTTCTTTTATTGCTATTACTTCTCTTACTTTACCCTGCTTTTTTAAATATTTAATATTAAATTCTTCTAAATATTTTTCCTTATCTATTACATACTTAATTGCATGTTTATCTTGTTTTAGAGCTTCTCTACATATCTCTTCTGTTTGTTTTTCTACAAATTGAAGTGCTAATCCATTTTCTTTTACTGCTTCTCTACATATTTCATCTGTTTGATTATTTACATACTCCAAAGCTAACCCGTTCTCTCTTACTGCTTCCATGCATATTTCATCTGTTTGATTGTTTACATACTTTAAAACATATCCTCTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 120218-120443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000008.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 120218 29 100.0 37 ............................. CCATGCTCCACCTCCTACAATATATAAGTTTTGAGTT 120284 29 96.6 36 .................C........... TAGAAGAAGCCTTTCTAAATAAAATAGCTACAGTTA 120349 29 93.1 37 ................T........C... CTAACGATTTGTATTTATTTTATTGTTACTTATATTA 120415 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 97.4 37 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TATTAAACATATTTCTGGTGTTTTATTTTTTACATACTCTAAGACTAATCCATTTTCTCTTACAGCATTAATGCACATCTCATATGTCTGTTTTTCTGCATTTATCAAAGACCATGGATGTTCCTTTACCCAATCTACATCTATTTTTCCCATTTAACTCTCCTTTTTCAATCTTATTTTTATAATACTATATTTCGATTTATTATAGTATTATTTATTTTCCTTTATAATTATTGTACATTTTATATTGACTATATAAAATATTGAAACTTGATTTATATAGTGATATAATTAGTTTATCCCAATCTAATTGATGCAGTTGGAAACTATAAAAGAAGAAGTACAAGAATCTGTTTTAAAAGGAAATTTTAACATTAAAGATTATACAAAGTTTTATGTAAATGAATTAAGATTTACTGAAGTTGTTTGTATTGACATAGAGGAAGAATTTCAAGATTTTATTAATGCTTGTACAAAACAATATATGCCAGTTACTTTTG # Right flank : ATAACGCCAATAAAAGTGGTTAAAAAAAGCTATCTAAATTAACAGATAGCTCTTTTTGAATTATTAAAACTTTTTAAAAATTTAAGATATCTTTTCCTATGAGTATTTATTCTTTTCTCTGGGTCAAATCCTCCATCTGTATTATAAATTCTATCAATAAAAGTCTCTTTAGTAATATTATCTTGGCATCCTACAGTAAATAACCATTCTCCATCTTTTTCTATTGCTATTACTTCACTTGCATTTCCCTGCTCTTTTAAATATTTAATATTAAATTCTTCTAAATATTTTTCCTTATCTATTACATACTTAATTGCATCTTTATCTTGTTTTAGAGCTTCTCTACATATCTCTTCTGTTTGGTTTTCTACAAATTGTATTGCCAATCCATCATGTCCTACTGCTTCCATACATATTTTTGGAGTCTGTTCTATTACAAATTCTAAAGATAAGTAGTACTCTCTTACAGCTTCTATGCATATCTCTTCTGTTTGTTCTTT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 121507-122165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000008.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 121507 29 89.7 27 ...G...T..........T.......... CGATAGACAAGTACAAGCATTAGAGAA Deletion [121563] 121563 29 89.7 37 ...............CT.........G.. CGCATAAGTAAGAGTAATCCACTTGCAATGAGATACA 121629 29 93.1 37 ..............T...A.......... CAGCATATTAAAACTATTCTGTAACTAAAACTAAGTA 121695 29 96.6 37 ...C......................... AGAAGCTAATCGCTTCGCATCTACATTTTTATTATGT 121761 29 93.1 35 .........G......T............ CTACATAACATTAAAAAATACAATTTTACGAAGTG 121825 29 93.1 36 ............T.T.............. CATCGTTACATAAAGTACATTAGCAATAGAAATCAG 121890 29 100.0 40 ............................. TAACGCTATATTTTTAAAAGAAACAGATTTTCTTACTAAA 121959 29 96.6 36 ....G........................ CCCTTGCAGACCTGTTATAAATGCATAAACGAGTTG 122024 29 96.6 32 ...G......................... CACTATATACTTCATTTAGCTTAGTATTCATC 122085 29 96.6 24 ................T............ TACTGTATAATTGGAATATTAAAA Deletion [122138] 122138 28 86.2 0 ................T.....-..A.T. | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 93.8 34 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TCTATATACTCAAGTGCATTACCATCTTCATTTACTGCTTTAAGATATAGGTTATATATCTGTTCTTTGGTTAAATTAAGTTCATCCCACCTTACATCTTTAAGTAACAGTCCATCTTCTTCTATAGCCTCAATACACATCTCATACGTTTGCTTTTCTGCAAATTCTAAATCCCATGGATAATTTTTTATCCTATCTAAGTTCACTTTTTTCATTTAATTTTTCCCCTTTTAAAATTATATTTTATAATACTTTTATTCATGTTTAATATATTATTTTTAAATTATTTTTATAATAAGTATAACATTTTTATTGTTTATATAAAATATTGTAAGTTGATTTATATAGTGATATAATTAATTTATCCCGATTTGATTGGTATATATGTTGAAATATCTACATTATTATTTTTATCTGTTAATTGGGATAAAGGACTTAGCTTAGTTGAAATGTAGTAATTTTAAGTATTTATTGATTTTACAAATAGATTCTTTATAGCT # Right flank : ATAAAAGAAGCCTCTATAGCAATTATGGAAGCTTCTTTAACTTCAAACCCCATATTGTTTATTTTTATAAATATTTTTATCAATAGCAACCACCAAAAATTGTTTATATAAAATATTGTAAGTCAATTTATATAGTGATATAATTAAATTATCCCAAGCTAATTAATATAGCATTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAGCTTATAGGAATTGAAACTACTGAATTGTAAGCATTTCTTAATTTTAGAAATGGCTTGTTTACAGTGATTAAACCTTAACACTATGTGTATTTAAATGTAAAACGGTTTCCTAAATTGTGGGGGTGAACTTCTATTAAACCTTAACACTATGTGTATTTAAATCAAGATAATCGAAAGAAGAATTTGCATCTATTGATATTAAACCTTAACACTATGTGTATTTAAATTGTTATTATTTCCTCCGCTTTCTGTACTATTTAAATATTAAACCTTAACACT # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:-0.05, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 122452-122941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000008.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 122452 29 100.0 37 ............................. TGTAAAACGGTTTCCTAAATTGTGGGGGTGAACTTCT 122518 29 100.0 36 ............................. TCAAGATAATCGAAAGAAGAATTTGCATCTATTGAT 122583 29 100.0 37 ............................. TTGTTATTATTTCCTCCGCTTTCTGTACTATTTAAAT 122649 29 100.0 37 ............................. TAAGTATTTTTGAAGGTGTGAAAGATTGTAGGTTTAA 122715 29 86.2 37 ...G...T........T.A.......... CATGTGGGATGACACCAACGATCACATTGTGCAATAA 122781 29 89.7 36 ..............T.G.A.......... TTCAATTATACAAACGTAACCTGCATAACTGTCTGC 122846 29 100.0 38 ............................. CTATTCTACTGTTATGTCCAGCTCGTACCCATATCCAG 122913 29 89.7 0 .......................AAA... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 95.7 37 ATTAAACCTTAACACTATGTGTATTTAAA # Left flank : TACTAAAATTAGACCTTAACACTATGTGTATTTAAACCCTTGCAGACCTGTTATAAATGCATAAACGAGTTGATTGAACCTTAACACTATGTGTATTTAAACACTATATACTTCATTTAGCTTAGTATTCATCATTAAACCTTAACACTTTGTGTATTTAAATACTGTATAATTGGAATATTAAAAATTAAACCTTAACACTTTGTGTTTAATATAAAAGAAGCCTCTATAGCAATTATGGAAGCTTCTTTAACTTCAAACCCCATATTGTTTATTTTTATAAATATTTTTATCAATAGCAACCACCAAAAATTGTTTATATAAAATATTGTAAGTCAATTTATATAGTGATATAATTAAATTATCCCAAGCTAATTAATATAGCATTTGAAATATCTACATTCTTATTTTTAACTATTAGTTGGGATAAAAAGCTTATAGGAATTGAAACTACTGAATTGTAAGCATTTCTTAATTTTAGAAATGGCTTGTTTACAGTG # Right flank : AGAAGCTTCTATAATCTCTATAGAAGCTTCTTTTTTTATCTTTCTTATTGTACTATATGGTCATTAGTGTCGTCCCACATACTGCCTCTAATCTCAAATTCAAGATTCTTTTCATCGCACAGCTTCTCTTTGCTCTTAGCAGTTCCAACCCCTGTAAGCTCTGGAGTCCAAACATCTAAGCTATAAAATCCGTCTTTTGTATTAGTCCCAGTGTAAATTTTAATAGGTTCTTCCACTCCATTTTTAGATTTTTTCTGCATTGTATATCTTAAAACTGTCTTATCTGCATTTGTACTTACAACTGTTACATCAAAAACTTTTTGGCTTCCAAAAATTCCTGTTGCAGATAAGGTCTTCCCATCTGCTGTTTTTACATATATATCTTTATAAATGTTTGGAGCCATATTCTGGTTTGTTACACTTAATCCTTTACTTGTACTTGTATTTCTTGTATCCCAAGCTTTTGGCTGTCTCGTTAAGGCATTCGTATTATATTCCAC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAACCTTAACACTATGTGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 431212-430458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000002.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 431211 29 100.0 38 ............................. AATCCATTAAGTCTAGCAGATGCTTGTGTTGCCATATC 431144 29 100.0 36 ............................. GAGGTAAAAGTAAAAAATGCAGGTGAAAGCAAAAAG 431079 29 100.0 36 ............................. TTGGTCTTGTCCTGGTTATGGTTTTGATTTTGGAGA 431014 29 100.0 36 ............................. AAATTAAAGCATGAAATAGAAATGTGGGATACTATA 430949 29 100.0 38 ............................. TTATCTTATTATAGTTTAGATATGCCATGAAGTTGAAG 430882 29 100.0 36 ............................. GTACCTATTCCCAGTACAAATAGGACATAATTTCTA 430817 29 100.0 36 ............................. TCTTTTGACTTAGCATTATTTGTACGGAACTTTAAA 430752 29 100.0 37 ............................. TGTTGAGTATAGAATTCACTTCTTGTGCTATTCGCAG 430686 29 100.0 38 ............................. GTTTGTAACTCCATTAAAACATCCATTGTGAACTTCAA 430619 29 100.0 38 ............................. GAAATGATGTCTTATGAAGGAAGAATAATGTCTAAAGA 430552 29 100.0 37 ............................. TTAGAATTTTTCAAACTATTTTCTAAATCATTGTATT 430486 29 89.7 0 ................A.....CG..... | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.1 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : AATGATATGTTAAATAATGATACAATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTACAAGTTGTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTCGTTACAAGTTATAGTTATAACGATAAACTAGGTCTAATATTTGATTAGATTTTTAATTAAATCTTGATTGTTAAGAGAGTTATAATATAAATAATTAAAATATTTTATTGAGAATTTGTTATAATTTATATCTACTATAAGTTTTATATGTTACAGTAGAATAATTTTGCAGTGAGCGAAAAATATGTGTGAATGTCTGTGAGCTAGTGATGGCAAGGTTTATAACTGTATTTTTATTTTTAGCTAAAAACACTACTGGTGGCTCACTGCAAATTACTTATTTTAATAACCCTACAAGTGTTGGAATTACTATAGTTTTATTTGGG # Right flank : TTACTTATTCATTAAAAAACTTAACTGAGAGTTTGATTTATATTATTGAATTAGCAATAATTTTGAAAAGTAGAAAATTATACCCCAATAATACCCCAACTACAAAAATAAACAATAAAAAATAACCGAAAAATTGCTCCAACATCATAACTAAATAGCTATATACCTGCACTTATAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTGAAATCCACGAAAAATGTATTGGTGAGTTTATCAATACATTTTTTGATGTGAAAATAATTATTAGGGGAAAATTATGACACTACAAAAATACTTTACATTAGATTATTTATTAAGATATGGATATTTTGATTTTAAGAAAAATAATAATAAAACTTCGATATACGCTAGGGAATTAAATTACACTTCATCGAGTACAATACATAAAGATATATTTAATTGTAATGATTTATATAAAAACTTAGGTAAAATACTAGATAAATTTGAATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1228910-1231035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000001.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1228910 30 100.0 37 .............................. AAAAAATCACCCCCTTTATAAGAATTTGCGAGTCCAC 1228977 30 100.0 22 .............................. GCACAAGATTAAGCACAAAGAT Deletion [1229029] 1229029 30 100.0 36 .............................. TGATTTCCAGAACAATTAGGAACGGTTAAAACAACA 1229095 30 100.0 36 .............................. GACTTACCATTCATATTCCATAAATTCTGCTTACAC 1229161 30 100.0 36 .............................. AATTTAAAGTTACATACTGTTTAAAGGGGGATATTA 1229227 30 100.0 35 .............................. CGTCAATTTTGTCCTCATCAATTTCATTACATAAT 1229292 30 100.0 36 .............................. TATTGTACCAAAAACTGGAGAAGCTTTTGAAAGCCA 1229358 30 100.0 36 .............................. TAATAAAGATAAGTTTATAAATTATAAATCTAAAGT 1229424 30 100.0 36 .............................. CTGCTTTGAAAGAAAGAATGTCCAATAGTGCTATAG 1229490 30 100.0 37 .............................. GTGTATGTAGTCAAGTTTCTTGTCTACCTCATCAAAG 1229557 30 100.0 36 .............................. AAGAATTAAAATTCAAATGTGAGGAAGTTGTTTAAA 1229623 30 100.0 36 .............................. AAAGTGAAGCAGAGCAAGCAGCAATAATGGAAAGAA 1229689 30 100.0 35 .............................. AAAGATGGATTAAGACCTGGCTGCATAATTTTCGA 1229754 30 100.0 36 .............................. ATTAAGTATAGGTTTAGTTGCTTGCTCATCAACTAA 1229820 30 100.0 36 .............................. AAATTACGTTTGGGAGCAGTATACCAACCTTATTTT 1229886 30 100.0 36 .............................. TCTATTTGCGAGTATTCCAAGTAGTGCGTTAGCTTC 1229952 30 100.0 36 .............................. TATTGTACCAAAAACTGGAGAAGCTTTTGAAAGCCA 1230018 30 100.0 36 .............................. ACGAAAGGATACTTAAAAAAGGGGGCATGAATTTAA 1230084 30 100.0 36 .............................. CAAACTTAGCATTACATCTACGACATACAAAGTACG 1230150 30 100.0 36 .............................. GGTATGTAAGTCATGTGGTGACCTACCCCTAGGTCA 1230216 30 100.0 35 .............................. GCTGATAGCTTTATTAGTCTGCTCTCTACTCTTAA 1230281 30 100.0 36 .............................. AATAATCGCTCTTATATCTCTGCTGTCTTTTATGCT 1230347 30 100.0 36 .............................. CTATAGTGCATTAAATAAAAGTGTACGTGATGTCTA 1230413 30 100.0 36 .............................. ACCATAACGATATGGGGCTGACTACAGACGAATGCT 1230479 30 100.0 36 .............................. GGGGGATATTTAGTTGTCAATGTACACTTTTTTCTA 1230545 30 100.0 36 .............................. GGTTTATTGAGTAATTCTATATAGAGGGGAATGTTA 1230611 30 100.0 35 .............................. GGGCTATTCCGCGTTCGCTCGCCGCTACTTACGGA 1230676 30 100.0 36 .............................. ACGTTATAAACCTCTTACAATTAAAGAATTTCTTTT 1230742 30 100.0 36 .............................. AGAGAATCAAGTTGAACGGAATCAAGGGTTAGATTT 1230808 30 100.0 36 .............................. CTACGATACAAACATCTATAAGAATTTTCGATGGAA 1230874 30 100.0 36 .............................. TATACTGGAGGTGTTATATCTTTTCCATCTACATCT 1230940 30 100.0 36 .............................. TTCAAATGGTCAAGGTTGGTGGCAATTATTATTTGA 1231006 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 100.0 36 ATTTAAATACATCTCATGTTACTGTTTAAC # Left flank : TCTTCGCTCAAATCTACAAAAACTATTTTTTTGTCGGTTTTGTTTTTTTCTATAAATTCAATTTTTCCTTTTCTAACAATTCCTTTTTCTTTTAATATTTTTAAGTATAAAAGAACTTGCCATTTGACAGCTTCTACATCAGCATCAGACTTTTTAATCTCTACTAAATATTCTTTTGTTAATTTATCTATCTTTATATTTTCAATTGCAATTTCTTTATGTTTTGAATTTTTTTCTTTTAGCTCATGAAGAATTCTACCTATTTTTACATCTTCACTATTTTCTTCTAGGTTTATTCTATTGCCAAGTAGCCAACATTGTCTTTTACAATGGAAATAGTAATTTATTAAAGTTCCTGTAAGCTTCATAATATCACCTATTTATTTGATTATTTATATATAAGTATATCATATATTGTCTTATTCAGAATATTAAAATTTATAATTTTACAATATAATTTACTATAAAATTATTTTTATTTAATTTAATATTGTATAATA # Right flank : CCACTGTAAAAGCAATATCTCTTAAAAGGATATTGCTTTTAAACACATTGAAAAGACTGATATATAGATTTTTTATCCCAGCTAATCATAAAAAATCTATAAAAGTTATAAAATATTTAAATTTCAATACTTAGAAACTATTCTTCATTTACTAGCTTGGGATAAATTTTAATTACACTATACTATATATCCTATTTCTAATCTAACCTTACCATATATACTCATGTTCTACATTTTCATTAAATTTGCTTCTATCAAATTTACCATCTGTAAAATACTGTTCACCATCATCAATATAAAAAATATCTCCTATATAATCATTAAATGAATTATCAAATTTACGAAGTTTATATGTAAAATAATCTAATTTTTCCATAATGTCAGACATCTTTACTCTTTTTTCAGAATAGTCAATATCATTGTTTTTTAATAGAGAAACATAATCTTCCCAAACATCACTTCCTACAACTATATTTCCAGATTCATCTTCTACTTGAGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTACTGTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [95.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 1980645-1979764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWI010000001.1 Clostridioides sp. ES-S-0005-03 CD-ESS000503-ESS000503-EN-USA-2017-093-JS_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1980644 29 100.0 36 ............................. CAAATCAATAAACATAGACATCTTATCGCTTACTGC 1980579 29 100.0 38 ............................. TTTAATTCTTCTTTGGTAGGTATACGCTTAATTGCCTC 1980512 29 100.0 37 ............................. CCAATAAACTTTAGAATAGGTATAGAAAATGCTATTA 1980446 29 100.0 36 ............................. AGGCAAGAAACCTAAAAAATTTACAGATAAAGAAAT 1980381 29 100.0 36 ............................. CTTTTTATGTGTACTTTTAACTTTATATTACTAATT 1980316 29 100.0 37 ............................. CACACTCATCTTAAATGTTATAATGCTGCTAAAACTG 1980250 29 96.6 36 ...............A............. AAGGAGAAATATGATGTAATCATTACTAATCCTCCA 1980185 29 96.6 37 .............A............... GCTTATACTTCTCAAATATGTTCAGAATGTGGTCATG 1980119 29 93.1 37 A..............A............. AAAAATACAAATATCTTATTCATTATATTTCTCCTAA 1980053 29 96.6 38 A............................ GCAACAATATTAGAAACCACTAAGCTTGTTACAAATAC 1979986 29 93.1 36 A...........................T ATGCTTTTGTAAGTGCGGCTAATATAGCAATAAAAG 1979921 29 89.7 37 ................A...A.......T TTTACACATGTTCTACTTAAAAACAAGAATAATTCTG 1979855 29 93.1 36 ...............A............T TATCTTTTACAATCTGATTAAATAGTTGAAAATATA 1979790 27 82.8 0 .................C..-.-.A...A | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 95.8 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : ATTATTGTTTATAGTAGTTTTTATTTCAATTAAATGTTTTTCAGCATCCTTTTTCTTTTCATAACTTCCATAACTTTTCTGTTTCTTTTTGCCAGTTTCTTCTTCCACATACTCCACATATACATGAAATTTTTCACTTCTTTTTCTTATGAAGGCTGACTTAATATCCATAAGAGCACCATCCTTTGAGTTGATTTAAGTTGATTACTTAATTATATTTTATAACAAGTAAAAAAAAATTTCAGAGTTTATTAAAAAAATATTTTATTTTTGTATAATTATAAATTGGTACAAATATTCAAAAGTAATCTATTTATGATATAATAAAGATATATAAATTTTGCAGCGTTCGATTTTTCTGTTTAAGTATGGTTTAACAGTTGAAATATAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACTACTGGTCGCTCACTGCAAATTTGAGAAGGTTGTATATGTGCAAGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : CTAAATAGAAAAAGAAAGCACTTACTTAAATAGTAGGTGTTTTTTTATACAAAAAATCAAAGGAAGTGAATATATGGTAAGAAAACTGCGGTGTAATGTTAAAAAATACTTTAGAAAGGAAGTGATAACTTGGTAATAGACATATATCTAAAAAATGAAAAAGAAAAAATAGATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATAAAAAAAGAAAAAAGATTTGAAACTATTGATATAGTAAATCTAGGTGAATTTGACATTAAAAAAGAAGGAGAGAAGATAAGAGAAATATCATTCAAGACATTCTTACCTAACTTATATGATGCTTCTTATTGCAGATATAGCGAGTTAAAAAATCCAATCGAAGTAGTTGCAATGCTTGAAAAATGGGTAGACCAAGACGAACCATTACGCTTAATAGTAACTGGTTTTGGTTACAATGGATTAGTTACAATATCTAATTTTAGTAATACTCAAACAGCAGGAAGAGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : TTTTATATTAACTAAGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //