Array 1 64665-63905 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXH01000003.1 Escherichia coli strain HH29S NODE_3_length_349682_cov_169.041412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64664 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 64603 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 64542 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 64481 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 64420 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 64359 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 64298 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 64237 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 64177 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 64116 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 64055 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63994 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63933 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81781-80166 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXH01000003.1 Escherichia coli strain HH29S NODE_3_length_349682_cov_169.041412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81780 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 81719 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 81658 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 81597 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 81536 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 81475 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 81414 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 81353 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 81292 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 81231 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 81170 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 81109 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 81048 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 80987 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 80926 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 80865 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 80804 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 80743 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 80682 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 80621 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 80560 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 80499 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 80438 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 80377 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 80316 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 80255 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 80194 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //