Array 1 115748-116264 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021456.1 Levilactobacillus brevis strain ZLB004 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115748 29 96.6 32 ............................C ATCATGCACATCTCGCAGGTTATTAATGCCAT 115809 29 100.0 32 ............................. GGAGTCTATATTTAAAAGGCTTGACAGTCAAG 115870 29 96.6 32 ............................C ACGGTAACGGTTGCTGGTAGAAATGTTGATAA 115931 29 100.0 32 ............................. GTACTGACCAGTTTTAGCGCCAGCCTTGGTTA 115992 29 100.0 32 ............................. GATCGATTGATTTTTAAAAAGCGAATTAAATC 116053 29 100.0 32 ............................. GTAATGTTTTCCGACCCCATGGTGTCCCCAGT 116114 29 100.0 32 ............................. TAATATTTATGCTGGCAGCCCGGTCACTTGGT 116175 29 100.0 32 ............................. GAGGTTTGTTAATTTTAAAATAATGAAAATCA 116236 29 89.7 0 ............G.............GA. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : ACCACAAGCGAAGTCCGGTAACGTTTGTCGGTCATATACTGGCGGACAAGTTCCATTAAGACGACGGACTTACCAGTACCGGCCGCGCCCTGAATGATGGCAACGGCGGATTCTTGGCCATTGAGACTGTCTTTGATGTAATGATTCATGTCGGTAATAACAGCCTTTTGGTCGTCAGACAAATCGTCGACGAAGAACTGTTCCTGTAAAATTTTATTCATCGAATAACTCCTAAATTTAGTGAATTAGCGTCACTGAGACGTTGGAAATAGCACTATTCATTATAGCAGGTTACGGTGATGGCGCTGAATTTTTTAAGGTGGATTGACTGGGGCGGAAAAGTGGAGAATTTTGGAATCTAGTGACTATAGTTGGCCTAAATTATTTAGTCGGTTAAGAGTTTGTGAATTGGGGATAGCTGGAGTATGCTTTAAGAGCAAAGTGATAAAAATAGCCGGATTTACAAAATAGGAATGCCGGTATATCAAGGATTCTTTAGT # Right flank : TTAATGAAAATTAATGATGATGTTTTTATATAAAAGGTATAAGATTAAATAGTACAAGGCGTGTATACGATTACATAAAAAGAATCAAGGTTAGCAATTATAAATCAAATGTTAAATAGGGTATGAAATATTTTGTAAATGTCATTAGTTGATTTAAGCTATTAAATTCGGTTATCTTAGTAATCATAAGGCGAATACCTAGCATTTAAATCTGTTAGAGAAGGGATGGTTATGTATGGAAGTGTCTAAATCCGTAGCGGCTTTGTGGGCTAAGAAAAGCTCAACCGATACGCAACAGTACTGGCTTCCGCTAATTTCCCATCTAATCGATGCGCGAAACACCATTAACTGGTTATTCAATCATTGGCTCAGTGATGGTCAACGGCAATTATTAATGGGAACCTTATCAGAAGAACAAACCCAGCAACTTGTTAAGTTTGTTGGGTTTGTTCATGATCTGGGAAAGGCCACGCCGGCATTTCAGATGAAGCAGTCCTATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125878-126638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021456.1 Levilactobacillus brevis strain ZLB004 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125878 29 100.0 32 ............................. AAGCCCCACTACGTCGATTTACCGTTGACAGA 125939 29 100.0 32 ............................. GCCTAGTTTTTTGTTTAGAAACTCATCAACAT 126000 29 100.0 32 ............................. ATTTTGAGTATCAGTTTCTTCAGGAGAACCTT 126061 29 100.0 32 ............................. ATTGTGCAAGTCATATACATGAAAACCAAAAC 126122 29 100.0 32 ............................. AAATCAAGTTATGAACGAAACGCTAATCTTAA 126183 29 100.0 32 ............................. CTTCCGGAACCAAATCCTTCCAACTTAAGATC 126244 29 100.0 32 ............................. TTATGCCAACTTTCTGCCACACTTAGGGCAAT 126305 29 96.6 32 ............................C TAATCAAGAACTACTTTGCAATGGGGCTTTAC 126366 29 100.0 32 ............................. CACTTGCTGATTCGACCTGCCGTCGGAGGGCG 126427 29 96.6 32 ............................C GCCGTCACTGGTCATCATCTCCTAAATTGGTT 126488 29 100.0 32 ............................. CGTAAAGGGCGTAAAGAGGCCGACACGGTGCA 126549 29 96.6 32 ............................C TAAAATCCGATCATTTTCGGCCATCAATCACA 126610 29 89.7 0 .......................A..GG. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTATTCCCCACGTGTGTGGGGGTGATCCT # Left flank : GTAAAGGATGACATCATTTCAATTGGTGCGGTCAAACGGGTACCGGGACAACCAGAGGATTTCTTTGATAGTTTAATCAAGGCTGAGCGAGCTATACCGGAGAATATTACAACTTTGACCGGACTTACGGCGGAAATGTTGGTGACACAGGGGATTAGTTTATCGGCAGGACTACAAGAGTTACGTGAATTTGTTGGTTCCTTACCGATTGTTGGCTATAATCTGCGATTTGACGAAATGTTTCTAACAAGCGGTTTTAGAACAATTAATCAGCCAGAATTAACAAATCGGATGATAGATTTATTACCGATGATGAAGAAGACTGATAAGTTTCTGGATAACTATCGTTTACAAACGGTATTGGCTAAATTTGATATAGTGAATCAGGAACCCCATCATGCCCTGGCAGATGCGAAAGCTACTTTTGCGCTTGCGGACAAACTCATTGAAAACCGGGTTTTGAAAATTTAGGAATCCCGGTATGACGGCGTTTTTTTAGT # Right flank : TTATCAAGGTTTTTAGATGCTGGACAATATCACATATTTCCAGCAGATGGCAGAATCCGTATTTAAAGATTCCAAATAGAAATATGGCCTTTTACATGGCGCTCCGTTCTTAAGGAGATATCGGTTGTTCAGAAGCGTAAGAAGGAAACTAGCTCCCAATCCGATCAGATCAGTGTTAGTCGTCGCGTATGTTATACTGGTGAAATTAGAAATCGCTTAATCCGGTCGTATGCCCACCGAATGAGCATTTTTCGGGCAAATAAACCACCAAAAGAAAGGATTGTCACGATGTCAATTTTAAATTATGCGGAGCAGGCTTCATGGTCAAATGGGTTTGGTTCCCAACAATCACCGATTGATCTGCGTCAGGCTAAACCCACTAGTGTTACTAATTTTGTGGTGACAGATCCATGGATAGCTGACCGAGAAATCGATGACCAAGTGACCATTCAGCTTGCTGGTCACGGGACAACGCGAATCAATGAGATGACTTGGCATTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1238322-1238944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021456.1 Levilactobacillus brevis strain ZLB004 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 1238322 29 96.6 32 ............................C TAGCTGTAATTGCGCGTCCAATGTGCTTCCTT 1238383 29 100.0 32 ............................. ATCCACACCACCGTATGAACGAGAGTGTACAA 1238444 29 100.0 32 ............................. ACTTCATGATCAACAGGACCGTCCTTTTTAAC 1238505 29 100.0 32 ............................. GAGAAAAACGTTAACTCAGTCTTTTACCATGA 1238566 29 96.6 32 ............................C GGCTGTACCTGAACCCCATTAAGCTGTTCGGT 1238627 29 100.0 32 ............................. ATAACCTCCCATAATGTATTTGTTACAACAGT 1238688 29 100.0 32 ............................. ATCTATTCCAACCTCAACGATTCCAGAAACTT 1238749 29 96.6 33 ............................G GCTGCCATCATTTCCTTGTTTCTGACCATTTTG 1238811 29 100.0 77 ............................. GTTTGGAGCCTATCAATTTGATTATCCTTTGTTTCCCAATATGTCCTTGTTGGGTACGTCACAAGCAACGATTTTTG 1238917 28 72.4 0 .....T....T.CA......TC.-...A. | ========== ====== ====== ====== ============================= ============================================================================= ================== 10 29 96.2 37 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : ACGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACGACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATCGTTCTCGGTCAGACACTCCATCATCAGCCCACTGCATTACCATCTGCGACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATTCAGTTTGTCGCGGTGGATTTAGACCAAATCATCGAATCAGCAGTACCGACTAATCAAGTGGACCTACAATTGATTCAGTGACTGATGAAATAAAATGTTGCGAGCTGGTTCCGATTATGGGGACCGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCGGATTGCCGTTGCCATGTTTCTGCGGTATGCTATAAAATATAATGAGTCCCACAACGAAACTCATAAAAAACGGCGGTTTTGAAATTTTGGAATGCCGGTGTGGCGGCGTTTCTTTAGT # Right flank : TATTACCTCAATAAACCATCTTGGATTAATGGTAAAAGAGTTGTCAAAAATATTGGCAACTCTTTTGCATATATACATGGCCACCGCGAACACACGTTCTTTACATTGCTTATGACTTCCTATATACTGAATTTAAGTCAACTTGAGAGAAGGTTATCGCTAATGAAACAGGCAATATTTGTCATGATGGATCAGTACGCTGACTGGGAAGGGGCTTACCTGTCCAGTCAACTGAACCAACTGACCGACTGGGGAGTAAAGACGGCATCTAATCAGCCGGAGGTTACCTCAATTGGCGGTTGGACAACACGAGTGGACTACCAGATTAGCGAGCTTAAACCTGAGATGACGCTATTGGTACTCATTGGTGGTAACGCTTGGCAACACGATGATCTTAGGTTAACTACCTTAATTCAGCAGTGTCTTCATCGAAAAGTCATTGTCGGATCCATCTGTGGCGCAGTTGATTACTTAGCCCGTAATGGGTTGTTGACGGGCTA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2319999-2319237 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021456.1 Levilactobacillus brevis strain ZLB004 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2319998 36 100.0 30 .................................... TTAAGACACTGTTTACTTTTGGTTTAGGAT 2319932 36 100.0 30 .................................... CTTTGCATGCGCAAAAGTGTCTTGGCCTAA 2319866 36 100.0 30 .................................... ATGAGAATAAGGCAATCCGGGCGGCCATTG 2319800 36 100.0 30 .................................... TGGACGTAATTGGCGTATTGTAGCGTATCC 2319734 36 100.0 30 .................................... TTTCAGGTAAGGTTACCAAGGCAACGCCTA 2319668 36 100.0 30 .................................... GGCAACGGATACTACAGAAGACAGCAGAAC 2319602 36 100.0 30 .................................... ACAGGAGAACCAACTAAGCTTATGCCGTGG 2319536 36 100.0 30 .................................... TCAGCTAACAAGGACTACGTAAAGTTGGTC 2319470 36 100.0 30 .................................... CGGCCTTACCGTAGATTGTACTGCCCTTGG 2319404 36 100.0 30 .................................... TTTTTCTTCGGAACTTGCCAATAGACTTCG 2319338 36 100.0 30 .................................... TGGTACAATGGCTTCCAGCTTATTGCCTTC 2319272 36 88.9 0 .A.........................A.C.....T | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.1 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCGTTATTTCAACGAAAATTGCAAACGAGGTTGTTGAAAGTCTTAGCTGATGATCAAACGGTGGGCTTAGTGGATGGGCTGCAATCATTGCTATCTCAACTATTAGCGGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTAGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGACGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATTTACCAATTCTTCTAATTGAATTTTCATCCACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTGTGGTAAATTCTCAAGGTGAGATAATGGTGTGAAAATGTCG # Right flank : ACCCACTAGCAATGCTGCTAGGTGCTATGGTGTCTTACGATTTTGATAAAATGGCTCATTGATAAGAGCGAGATAACTTCTTTGAAGATATTAAATGACCTTGTAAAAAATGGTCTATAGATCTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCGCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCACGTATCCTTAAATCTGTATCATCTCAATCCAATCAACCAGCGTTTAGCAGTCCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGCCAACCACACCGCGTATGATAGAGACGATAGCTAGAATTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 2386543-2386331 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021456.1 Levilactobacillus brevis strain ZLB004 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2386542 29 96.6 32 ............................C AGCCGTATTACCTGCTGGGCTTATAATCTGCT 2386481 29 100.0 32 ............................. TAGTAGCCGCTTTGTTAACAGCGCTGAACGCC 2386420 29 100.0 32 ............................. ACTTTCTGGCTTGGGTGAAGAAGATGGGATTA 2386359 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCAGAGCGCTTGAATTTGACGGCGCAGTCAACTGCGGAATTTGTTCGGAAATTGGAAAAAAAGGGGTTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGACGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACAATTTTAGATGATACGGAGTTGGATCAACTTTCACATATTTTAGATAAGATTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGTGAAGATCGGTAGGGTCGGTGTCAGTTTCGGCGATATTTCTGAGGGCTGATTTATTTGTTAGACAACCATGAAGACTTGCACTCAGAAGCAAAGTGATGAAAATTGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGGATTCTTTAGT # Right flank : GGCCGTGCCTACACCCACACGCTTTTCAGCCAGTATTCCCCACGCCTGTGGGGGCATTTCCGCTACGTCCATAAAATAGTATTAGCGGAAGTAGAAAAAACATGATTTTTCTATGTTTAAATTTTAATTTTCGGTAAACATTAAGCACCCTATTCGTATAGCACTAGATATATTGAAAGTAATTACAAAGGTAACGAAAGAAATAATTAGTATGATAAAAACCCCTAGCTTTATTGTTAGGGGTTTTATCAGATAATTTCCACGTCACTATAGTGCATCGGCTGCACTGTTTTATAGATGTGTTAAATTTGACGATTTGCGGCAATCTAGTTCACATTGCACAATCCGATAATAAATTGGATAAATCTCTGCGAGAATTTGATGTTTGATAATATTGACTGGATCAAAGGGGTTTACATTTGTGAGATTGAGTCCGCCAGAATTAGTATCACCGTAATCGACTGTCCAATAATGTTGATCGTCAGCTACGAAATGGTCAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //