Array 1 109844-107862 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWT01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain NCTR281 NCTR_281_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109843 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 109782 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 109721 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 109660 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 109599 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 109538 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 109477 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 109416 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 109355 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 109294 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 109233 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 109172 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 109111 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 109050 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 108989 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 108928 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 108867 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 108806 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 108745 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 108684 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 108623 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108562 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 108501 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 108440 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 108379 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 108318 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 108257 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 108196 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 108135 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 108074 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 108013 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 107952 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 107891 29 100.0 0 ............................. | A [107864] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129579-127476 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWT01000005.1 Salmonella enterica subsp. enterica serovar Kentucky strain NCTR281 NCTR_281_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129578 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 129517 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 129456 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 129395 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 129333 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 129272 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 129211 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 129150 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 129089 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 129028 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 128967 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 128906 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 128845 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 128784 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 128723 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 128662 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 128601 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 128540 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 128479 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 128418 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 128357 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 128296 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 128235 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 128174 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 128113 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 128052 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 127991 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 127930 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 127869 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 127808 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 127747 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 127686 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 127625 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 127564 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 127503 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //