Array 1 1930201-1927245 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJEO01000002.1 Klebsiella pneumoniae strain THC11 sequence2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1930200 28 100.0 33 ............................ CAAACAACCATCCAAGTAACCTAATGCTTATGA 1930139 28 100.0 33 ............................ TCTTTACACCATCAACTTTTATGTTTGAGGCCC 1930078 28 100.0 33 ............................ CAGACTGGGGATTAAAGGAGTATCAGAAAGGAA 1930017 28 100.0 33 ............................ TCTGCCGTGCCACTGGTAGGGCCAAGCTCAGAC 1929956 28 100.0 33 ............................ TGATTTTTTCACTGATGTTGCTGGCTGAGTTGA 1929895 28 100.0 33 ............................ CGTATTTACCACCAGTGAACAGCTCACGGCGGG 1929834 28 100.0 33 ............................ TTACCCTGATATTGATCGCATCATTCCTAAGCA 1929773 28 100.0 33 ............................ TTCTTCCGCCTGGCATTCCCGGTGCTGGCGGCC 1929712 28 100.0 33 ............................ CCATCATGCTCTGGCAGTCGGCGTTGATGAAGA 1929651 28 100.0 33 ............................ TAAACGCAAGCCTGTTTGTTGGTGTTTGGGTCT 1929590 28 100.0 33 ............................ CGGCGACGATATAGGGCCATACATCAGCCTGAG 1929529 28 100.0 33 ............................ TATTTCCATGCTCCGCCGGGAAGCATTTCACGG 1929468 28 100.0 33 ............................ TTCTGCCTGTTTTGGTGACATTAACAGGGTCAC 1929407 28 100.0 33 ............................ CCGCGAGCAGGCATCAGGAACCTCTAAGGGTAA 1929346 28 100.0 33 ............................ CAGCCCGCCGCATGAACTGCTTCGCATATCGTT 1929285 28 100.0 33 ............................ CGGATAGTAGCCATTATTCAGGTGCCTCCATAT 1929224 28 100.0 33 ............................ CAGCAGCAGCGGAAGCATCAGCACGCGCGGCAT 1929163 28 100.0 33 ............................ TAATGGCTACTATCCGTTATGGCACCATCATTG 1929102 28 100.0 33 ............................ CCACTATTGGGATGCGGTGCGCTATGCGCTGAA 1929041 28 100.0 33 ............................ TGCGGCATGATTGAGCTGAAGAGGCGTGATAAG 1928980 28 100.0 33 ............................ CATTAACCGAAAGATTCGCGAAACCTTTAGCAA 1928919 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 1928858 28 100.0 33 ............................ TTAAATTTGGCATCATCGATAAAGCGCCGGAGA 1928797 28 100.0 33 ............................ TTGGCGCACCATCTCAACAGAAGCCCTCATCAC 1928736 28 100.0 33 ............................ TCGTCAAACGGTACGCAGCCCTGGGAATTCTGT 1928675 28 100.0 33 ............................ TGCACCAGGTAAATTGCTTGGCACGAATACTCC 1928614 28 100.0 33 ............................ CTATTCTGGTCGTTCTGGGTGCCATTTAATTTT 1928553 28 100.0 33 ............................ TTCTGCAGCATGGAATCCATGCATCTTCACATG 1928492 28 100.0 33 ............................ TACATAACAATGCTAACAGTATGTTAATATATA 1928431 28 100.0 33 ............................ TGGCGCGAACTGCTGGGTATGCAATCTGAAGGT 1928370 28 100.0 33 ............................ CGCCAAGGAAAAACTAGCAAGAACTCAGGAAGC 1928309 28 100.0 33 ............................ CAAAGGGTCGAAGCTGTAAAAGGATTCGCTGCA 1928248 28 100.0 33 ............................ CAATCATGCATGAGTCTGGTGAATACATGTCTT 1928187 28 100.0 33 ............................ CCTGTTTCCACCTACGCAGCAGCCCGTACCAAC 1928126 28 100.0 33 ............................ TCCTACCGTGGGAAGCAAAACACACATTGTTAG 1928065 28 100.0 33 ............................ CGGGTACAGCGCCAGACATTCGCGAAACTCAAT 1928004 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 1927943 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 1927882 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 1927821 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 1927760 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 1927699 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 1927638 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 1927577 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 1927516 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 1927455 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 1927394 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 1927333 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 1927272 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1939959-1938954 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJEO01000002.1 Klebsiella pneumoniae strain THC11 sequence2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1939958 28 100.0 33 ............................ TGACATACAAGCAACAATGAATTTAACGCCCTT 1939897 28 100.0 33 ............................ TGAGATTGCACAGAAAAACACATTCTGGACGGA 1939836 28 100.0 33 ............................ TGCATGGGATGGGGTTACGATTGCGCACGATAG 1939775 28 100.0 33 ............................ TACGACATCACCCCCACCTCAATCAATTCTACT 1939714 28 100.0 33 ............................ CAATGTCCAGCCTTTCTGGCGTTGCCAAGGGAT 1939653 28 100.0 33 ............................ TAAAAAGTATATTCATGATTTTATCGAGAATGC 1939592 28 100.0 33 ............................ CTACAACATGCTCTCCTCTTCCTTTGTTTTCAC 1939531 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 1939470 28 96.4 33 .............G.............. TGGTATCGGCATCAGTATCATCAATGGTCATCA 1939409 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 1939348 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 1939287 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 1939226 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 1939165 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 1939104 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [1939095] 1939042 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 1938981 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.0 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //