Array 1 337927-339968 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDW010000048.1 Salmonella enterica isolate 4519_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 337927 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 337988 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 338049 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 338110 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 338171 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 338232 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 338293 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 338354 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 338415 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 338476 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 338537 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 338598 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 338659 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 338720 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 338781 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 338842 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 338903 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 338964 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 339025 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 339086 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 339147 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 339208 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 339269 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 339330 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 339391 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 339453 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 339514 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 339575 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 339636 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 339697 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 339758 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 339819 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 339880 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 339941 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 356101-357209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDW010000048.1 Salmonella enterica isolate 4519_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 356101 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 356162 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 356223 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 356284 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 356345 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 356406 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 356467 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 356528 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 356631 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 356692 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 356753 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 356814 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 356875 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 356936 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 356997 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 357058 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 357119 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 357180 29 96.6 0 A............................ | A [357206] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //