Array 1 163180-160649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMW01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163179 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163118 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163057 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162996 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162935 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162874 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162813 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162752 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162691 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162630 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162569 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162508 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162447 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162386 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162325 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162264 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162203 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162142 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162081 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162020 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161959 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161898 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161837 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161776 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161715 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161654 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161593 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161532 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161471 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161410 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161349 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161288 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161227 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161166 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161105 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161044 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160983 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160922 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160861 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160800 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160739 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160678 29 93.1 0 A...........T................ | A [160651] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180754-179687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMW01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180753 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180692 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180631 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180570 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180509 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180447 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180386 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180325 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180264 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180203 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180141 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180080 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180019 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179958 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179897 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179836 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179775 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179714 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGTAAATACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTTTTCCAGGCGTTGCGTTACGAGCGCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCTTCCTTGTGGCTGTGCTGCTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACTGGAACAACGATAGCGGGCAACTGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTTATGTTGAGTTCCGGGATTTCAATATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCACAACATCATTCAAACCGTATAACTACTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 181793-180971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMW01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181792 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181731 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181670 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181609 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181548 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181487 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181426 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181365 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181304 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181243 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181182 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181121 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181060 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180999 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCACAACATCATTCAAACCGTATAACTACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCGATGTCGGTACATGATATGACCACAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGAGTAGCGATCGCCCCAATCCAAATTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAGAAATTCAGGGTCATGGATGAAGCCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATCTTAACCAGCAGGCTGGGTTTGGCGGGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTTAGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //