Array 1 6869-5311 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBKG01000029.1 Capnocytophaga leadbetteri strain DSM 22902 Ga0183452_129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 6868 46 100.0 30 .............................................. TTCAGTTTATCAATGCCCTGGCGCAAAACT 6792 46 97.8 30 .................C............................ CGAACTTGGTGGCGTTGTCTTTTGGGGTGA 6716 46 97.8 30 ..........................C................... CCCTACCGAGCTGCTTACAAAGCAAATTGT 6640 46 95.7 30 .............C.........A...................... AGATTGAAAATCAACGATTAAGAGGAGAAG 6564 46 97.8 30 ..........................A................... CGTCCTGGTATTGTGGTTGGAATTTAGGAA 6488 46 95.7 30 ..........................A.................T. ATACTGCCGATAAAGCACACGAACTGAAGC 6412 46 100.0 29 .............................................. CAAAACACACGAGGAAGTAGGCGAACTTA 6337 46 97.8 20 ..........................A................... AAGACGGCATACTACAAGCT Deletion [6272] 6271 46 73.9 30 A...A.T.C..T.G.G..GC...TA.A................... TATGATACTGGGTGCTATCGAAACGTTACT TT [6252] 6193 46 97.8 30 ................................C............. TTTTCTCCGATATTCACAATGTCGAAACCC T [6181] 6116 46 97.8 30 A............................................. AGCAGAAAGTCCAAGAGGGTACGCATTTTC 6040 46 97.8 30 .........C.................................... AGCACCTTTTCACCATTAATGCGCATATCC 5964 46 95.7 30 ...A......................A................... CGTACAAAGAGCATATCAAAGTACATTACG 5888 46 100.0 30 .............................................. TAACCTCTTCGTGGTTTTTGAGGAGTTCAT 5812 46 95.7 30 .......................A...........C.......... CTCGGGGCGTACCTCTACCCTATCGGCAGG 5736 46 93.5 30 .......................A...........C.A........ CTCGGGACGTACCTCTACCCTATCGGCAGG 5660 46 97.8 30 .................................A............ TTACCGCCAAGAATATCGAGGACTTACTGC 5584 46 100.0 30 .............................................. CACAATTCTTCTTTATCAACAAGCGGTACG 5508 46 97.8 30 ............................................T. CAAGCCATTGAGCATTAGTAAGGTCGTAAT 5432 46 95.7 30 .............C............A................... ATTTGATTTTCTACTACTTTCTGAAACTCC 5356 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 21 46 96.5 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Left flank : ACATACAAAGGTTCCAAAACAAAGAAACGTGCTGAAGCCCTCTATGAACCAGAGTATAGAGAAAAACTTTTAAAACTTTAAATGCGAACGCCGTGGTTTTGTGATTGATAACAACGCAAGCCTTTGAGGCCTACTTGCAGGAA # Right flank : CTCAATCTTTTAAAGGTTTTAGTATCGTTTTACTGAAAAACAGTACTGAAAAACCTCCTCTTTTGCCTTTGCTCATAAGGCAGAAGAGGAGGTTTTCTCTTTCATATTCTTAAAAAGAGTTCTATGCTTTGGTAATGTTTCCTAGGCGGTCTACTTTCAGTTTGATACAGACTTCTTTTATTCTACTATCTCCGCTAATAGTAACCTCTAACTTATTTAAACTTCCTAATTCTCCTATCTTAGATTTAGCATCATAGGATTTTATGAGAGAAGCTATAGTAGATTTTACAAAATGACATTCGTTTCCTGTAAAACTCACTGTTTTATAAATTCTTTCTTTCTGTTCTTTGATGAGGTTATTGAAATCTATTGTCTCTATGATTTCTCCTTCTATAGGCACATACACTAAATCGTTAGGCGAAAGGCTAAACAACAATAGTTCTCCTTTTTCATTGCGCTCGGGAACAGAAGGAAGTCCTTGTTTTTGTCGTTCAATTACT # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGTGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //