Array 1 55-1156 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000198.1 Acidiplasma aeolicum strain V contig_311, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 55 30 100.0 37 .............................. TGTATGCGAACGTGCATATAACAAAGCAATCTTCATT 122 30 100.0 37 .............................. ATTCCACAAGATACTTTCCGTGCATGGGCGCACGAAA 189 30 100.0 37 .............................. TTGCTTGCGTCTTTGCCGAATGAGTCTGATATTATCA 256 30 100.0 38 .............................. GTTTATGCTGACATTTATCGAATATTATCCACACAACC 324 30 100.0 41 .............................. GTTATTAGGATATACCACATTCTATCCTATATACATTTAAA 395 30 100.0 35 .............................. GATTTCCCCTAATGAGCAAGAATTATCTAATGGAA 460 30 100.0 37 .............................. CAGATAGAGATGTAATATATGTCGATTTGGTACTAAA 527 30 100.0 37 .............................. CTTATGAAAAACGCTAATAAATCGCTTTTCAAAATAT 594 30 100.0 35 .............................. TTTATTTTCGGTCTTCTTCATTCAACACCCTTATC 659 30 100.0 37 .............................. TACATCCAGAACGGAAATAACGCGGGACCAAACTCGG 726 30 100.0 36 .............................. TGCATATTCGTATTTTTGGATTTGTTCGTATGTCCA 792 30 100.0 38 .............................. CTGGTTTCGTATTTTGTTGATTTTGTGATGTATTTCCA 860 30 100.0 36 .............................. TTATGATTTTTGCGAATTTTTCTGGGTCTGTATTCA 926 30 100.0 37 .............................. ATGGTCTCGATTGTCTCGGCTATTGCGGGAAATTCGT 993 30 100.0 38 .............................. GAGAAGGCAACAAGGGCCAAGCGAAAATTAGAAAGAGA 1061 30 100.0 36 .............................. TCAAATGGCCCCGACCCGAAATACCACAACAAAGTC 1127 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 17 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : CCTTAATAGGATTGAAAGTCTTATCTGGGGGAAATTGGTTTTACGGCGAGCAGAG # Right flank : TGATAGATGTCCTTTCGTATGCTTGTTACATCCCCGGGTTAAAATAGAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 33-1205 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000149.1 Acidiplasma aeolicum strain V contig_310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 33 30 96.7 38 .............................T TAAATAGAGATGAAGGTACAATAAGAGGCCAAACACCA 101 30 96.7 37 .............................T ATATGGTACCCGAATTTTTCCAGTGAGCCTGGATTTA 168 30 100.0 37 .............................. CGATGAGGCGCCATATGAGGTTGCCCATTACCATCTA 235 30 100.0 37 .............................. AAGCTCGAGCCTGAAGAGCGGAAAAATTCAAAGTATC 302 30 100.0 35 .............................. AAGTCCCCCCTGAAATGCTGGATGAAAAGGAAACG 367 30 100.0 36 .............................. GTGTAAAAAATGGAAAATGAAAAAATGAATGAAAAA 433 30 100.0 39 .............................. CAGTGGAAAAATCAGATATTGATTTAGTTTTTCACAATC 502 30 100.0 37 .............................. AAAGAAGAGCCTATTAACATTGGTGCCAGGGGATATA 569 30 100.0 38 .............................. AGCTACCCTGTATCTTCAATCATTGTCTCTCACTATAA 637 30 100.0 37 .............................. TCATTTGCGCCTCCTTCAGTTCTTCCCGTGGATACAA 704 30 100.0 36 .............................. AAAGACCTTTTCATTTCTCCACCTTTTTAAAATATA 770 30 100.0 38 .............................. GCCTTGAATCAAGGTCAATGTCTCTTCTGGATATTCAG 838 30 100.0 38 .............................. GTTTCCGTTGATGTTATAGATGTTTGTTGCTCTACATT 906 30 100.0 37 .............................. GGATGTAATAAGGATCTGTGGCTGGGATGGATATGCA 973 30 100.0 37 .............................. GATCTTCAGGCAGTCTCGATGGCCCGTGTACCCCAGA 1040 30 100.0 38 .............................. TTTTGAGATGCAATTTTGCTTAATCTTTGCAATGAAAT 1108 30 100.0 38 .............................. TTATATATGGCAAAATATTATCCATCGCAAATTAAATA 1176 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.6 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : ATGTGGACCCGAGAACTGCAATGACATTAATCG # Right flank : ATGCGGTATCCCCTTCTCATCATACACAACTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 754-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000424.1 Acidiplasma aeolicum strain V contig_371, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 753 30 100.0 36 .............................. GATGTGTCTACTGCCTTTTTGAACCCCGGAATTAAA 687 30 100.0 35 .............................. ACTGTCAATTCTATATCGAATTTTCCTGGATTTGA 622 30 100.0 37 .............................. AAATGGTAAAATGAAAAAACAGAATAGAGTGACAATA 555 30 100.0 38 .............................. GATGGCGATATCGCTTCATTGTTTGAGCCATGGGCATC 487 30 100.0 38 .............................. TTAGTAACAAAATTAGTATATTCACGTTTCTCAAATGG 419 30 100.0 36 .............................. GTATCGGCTATGCAAGGAACGTATACAGGGACATAT 353 30 100.0 36 .............................. ATAAATCTAGGGGCGTATTTGCTATTCTATTACGAA 287 30 100.0 37 .............................. GCAATAGGTGCGTCAGAAGCGGGGGGTGTCATCACTG 220 30 100.0 36 .............................. GGACCAAACTCGGGAGTTCTGTACTATGGGCAACCG 154 30 96.7 37 .G............................ TTGGTACGTTTTGTATATAAGCAAATGCACCAATACC 87 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : CTTATATGGTTATTCAAGAAACGGCAATTCCAAACAA # Right flank : GATTGTTAAGTTTTCACTAATTACATCACCATTACTAGGTTAAAATAGAACCTTAATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 882-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000306.1 Acidiplasma aeolicum strain V contig_354, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 881 30 100.0 36 .............................. TATAAAAGAAGAAAACTAATAAACCGAATTAAAAAA 815 30 100.0 37 .............................. TGTTGTTGTATCTGGATTATAGATAATTATTTGAAAA 748 30 100.0 37 .............................. TAATGCTGTCTGCCCCAAATATATCCATTTTATTCCA 681 30 100.0 37 .............................. TATTGATATTGGGTTGGCATAAAATGACGAGTATCCT 614 30 100.0 36 .............................. TTATTCCAACTATGGAAAAAGAAATAAATAAAAAAA 548 30 100.0 36 .............................. CTGGACCTGTGTGAGATTGTTAGGAGAGGCTGACAC 482 30 100.0 37 .............................. CCTGTCTCCAGCCTGCCATGTTGTTCCTATGAACTTG 415 30 100.0 36 .............................. TAGATAATACCTTGCTTTTGCTTCCCCAATTCCATA 349 30 100.0 36 .............................. TTCTATGGCATTGGTGCACCACAACCATGGATGGGC 283 30 100.0 36 .............................. GATTATACAGCCTCACAGTGGCAGAGCATCTCGCAT 217 30 100.0 38 .............................. TTTCTAATCTTTCAAGATTTTTTAAAGATGTTTTATAA 149 30 100.0 36 .............................. AAATAAAATGCTGATACAGGTACACTTTACAAAAAA 83 30 93.3 0 .........................A...A | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.5 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : | # Right flank : ACGAAATGAATATTCCACTGGATTATCTTCAGATATATCTGCATTAAAATTAAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 65-631 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000451.1 Acidiplasma aeolicum strain V contig_413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 65 30 100.0 37 .............................. ATCATAATAAGAGATTATGTAGAGTTATTTAATATTA 132 30 100.0 38 .............................. GGGAAAATCCATTGCTGTGCTATCCCCAACATAGATAT 200 30 100.0 39 .............................. TTCCTTACTCTAACCATCGACCCGAAAAAAGTAGGATGG 269 30 100.0 36 .............................. AGTGAGGCAGGAGGAGTAATTAACGATATATCGGAT 335 30 100.0 36 .............................. TCATAATTTAAACCCTCCAAAGAAATGTTTAATAGC 401 30 100.0 36 .............................. TCAGCAGTCCAGCATCCACCGCCTCCACCCGATCTA 467 30 100.0 38 .............................. TTTGCCCTGCTTGTGGAGAGGAATTATAAAGGTGATTA 535 30 100.0 37 .............................. ATAGTATTCCTGTCGCTGGTTTCAGCCGTATTTTTGG 602 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : AAATAGAACCTTAATAGGATTGAAAGGAGATCGCCACTTTCCACACGGAATGTGACGGGAACAAG # Right flank : AGTACCCCTTTTATTACATTCTTTTCAACATTGCTTGCGTTAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 597-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000013.1 Acidiplasma aeolicum strain V contig_430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 596 30 100.0 37 .............................. TGCAAGTGGAAGATGGAAGAACTGGTTCCAGTTCTTA 529 30 100.0 38 .............................. TTGGAATGTGGACATCGTAAATGGTTTTCCGATATTTT 461 30 100.0 40 .............................. AACATTGAGCAACAACATGTCAGGATCCTTATTTTTTTTA 391 30 100.0 38 .............................. TTTTCACGCCATCTGCCATCTTTTTACGGACGCCACCG 323 30 100.0 37 .............................. GTGATGTTGACGTGTTTACCCGCACGTCCACAGACTT 256 30 100.0 37 .............................. AGGTAAATAATGCATCTGGAGAAAATCTTGCATTTTA 189 30 100.0 36 .............................. TCATTCCAAAAACAAAAACGCCTGCTCCTATTCCTG 123 30 100.0 35 .............................. AAAAAATGGAATTGATAAAAGGCATACCAGAGGAG 58 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : GAATTTAAAAAGATCGATTTCTAACTCCTTTAATTC # Right flank : GTTCTTTTTGTTTTCATTAATAGATGTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 46-675 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000262.1 Acidiplasma aeolicum strain V contig_404, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 46 30 100.0 39 .............................. TACAACAGGATTATCTGTAATGGGTTTTACGATTGAATG 115 30 100.0 38 .............................. GCAAATATATATGCATATAATGCCACACTCGAATCATA 183 30 100.0 35 .............................. TTTTACAACTTTACAGCTCCAAATGCCGGTTCATA 248 30 100.0 36 .............................. TATTTTGTTTGTGTAAATATATATGAACAGGTTTGA 314 30 100.0 37 .............................. GTCCATATTTAAGCCATTTTCATATCCTTTATTAATT 381 30 100.0 34 .............................. AAGAGTAACCCAATACTCCTTTTGTCCTTTTCAG 445 30 100.0 37 .............................. AACATCAGCCAAATTAAGCAATTTTTGAATTTCATCA 512 30 100.0 37 .............................. AAAGAAAGAAGTTTCAATTTGTATGCTATGTCTGTTA 579 30 100.0 37 .............................. ATGACTGCTGGGCATGATATTGAAAAAGGAGCAACTA 646 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 100.0 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : GGATTGAAAGGATTTGTATTATTTCCAACAAATTTCGATTGTAGAG # Right flank : GCCATTGAAAATTTATTAACTGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 555-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000250.1 Acidiplasma aeolicum strain V contig_464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 554 30 100.0 39 .............................. GGCATTACAATTTCAATAATGATAACAGACATTGCTTAT 485 30 100.0 36 .............................. TGGAATTGCCGTTTCTTGAATAACCATATAAGGACA 419 30 100.0 39 .............................. ATTTTTATCGGTTTTGCCATCATCCCCCCGCCACCTTGT 350 30 100.0 36 .............................. TTTTTGGATTTGTTCGTATGTCCAGTTGTAAGGGTA 284 30 100.0 38 .............................. GCTATCGGTGCCAGCGAAGCAGGAATTGTTAATAACGA 216 30 100.0 39 .............................. GTACTACTCCACATGGAACGGAATTAGATAAGCTTCCAA 147 30 100.0 37 .............................. ATGGTCTCGATTGTCTCGGTTATTGCGGGAAATTCGT 80 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 38 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : TCAT # Right flank : GGAGAAGGCAACAAGGGCCAAGCGAAAATTAGAAAGAGTGTAAAAATAGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 10348-15109 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCQ01000153.1 Acidiplasma aeolicum strain V contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 10348 30 100.0 37 .............................. AATGATCATGTTCTTATTGTTGGGTCTTCTGGTTCGG 10415 30 100.0 38 .............................. ATTCTTATAGCCTGGCAAATACACCTCTGTGAAATCTA 10483 30 100.0 37 .............................. CGTGTATTTTCTTGCCGCTTTCCGATGTAGATATGTA 10550 30 100.0 35 .............................. AATTGTGTTAAGGGTGTTAAGATTGTTAATAACGA 10615 30 100.0 37 .............................. TTCGGTATCTTTTGACCATCCCTTTTTGTATATTCAT 10682 30 100.0 37 .............................. TCAACAATAGAACCAGAACGACTGACTGCCTTAAATT 10749 30 100.0 35 .............................. TGATATAAATATAATAGGAATATGATAAGAATATA 10814 30 100.0 40 .............................. CATGCATACCCTGTTGCTTCTATAATCATTTCAAGGCCTG 10884 30 100.0 38 .............................. ATGGTCAAATACGAATTCCGATTTGTTGCCGCAAAATG 10952 30 100.0 37 .............................. TGGTAAGAATGGCTATAAAAGAGTACAGAAAAAAAGT 11019 30 100.0 35 .............................. CCTGAAGTTATTTCCAATCCGTTCTCATATATCTT 11084 30 100.0 39 .............................. AAATGAAAAAACAGAATAGAGTGACAATAACATTATCTG 11153 30 100.0 37 .............................. AGTCATGAAATGATGCATAGCCTTTGCGCCTATAATA 11220 30 100.0 36 .............................. AAAAATAAAAATTAAGAAAAAAAAATATTAATAATC 11286 30 100.0 38 .............................. TTGCATGGGCCGCCAATACCTACACTGTTGATATGATA 11354 30 100.0 37 .............................. GATATTAAATAGTGATTTTAAAAAAGTAATGTCTCAA 11421 30 100.0 36 .............................. TATCAAACGGAATATATAATGTATATCATATCAACA 11487 30 100.0 37 .............................. TTTTATACGTCTGTTATATGGAGTATTTTCTTGATGG 11554 30 100.0 36 .............................. GATTATAAAAAAATTAAATATGTAAGACTATTAACA 11620 30 100.0 34 .............................. CTTGTAGGGAATTCCTTTACGCTTTCTATTTTCA 11684 30 100.0 36 .............................. GAACTTAATTCTTTGCTAAAGGAGACTAAATTTAAA 11750 30 100.0 36 .............................. AAAAAATGCTGGAACAGCTGGAACAGTTTTAGAGAC 11816 30 100.0 36 .............................. TGTATTCCTTCTCTAAGGGGTCATAGAGAACTCTGA 11882 30 100.0 37 .............................. TTTGAATGGTTTAATTCCGTTTGGTGCTATGAATAAG 11949 30 100.0 37 .............................. AAAAAATACTGGAACAGCTGGAACAGTTTTAGAGATA 12016 30 100.0 38 .............................. ATGATTATTATTTATGACTAATTTAAAAAAGATTTAAG 12084 30 100.0 36 .............................. ATCTAACTCCTGGCATGTTGAATAATTTTGGTTATA 12150 30 100.0 35 .............................. TATATACAACTTAACAATACTATATTAAGTATGCA 12215 30 100.0 37 .............................. TGTATACACTTTTCCATCTTCTGTTGACAACACTTCG 12282 30 100.0 39 .............................. CTTGCTTCTCTTCAACATAATTTGCTTCGCCTTCGTATG 12351 30 100.0 38 .............................. ATTTATATGCCTTATTATAGTTATAGCCAGGTTATTCA 12419 30 100.0 36 .............................. ATATCTTGTCTATCCCTTTTGTTTGCCTTGCTTTGT 12485 30 100.0 39 .............................. TTCCAATTGCTGAAGCATCAGGCTAAACGGTATTGTATA 12554 30 100.0 35 .............................. TAGGAGACCAAGAAAACGGGTTTTCATCGAATTCA 12619 30 100.0 36 .............................. AGGTATTCAGCCCATGCGTTGACGAAAAAACCGGTA 12685 30 100.0 36 .............................. TTTGCACTTATTTAATGTTTTTTTAAGTATTATTAA 12751 30 100.0 35 .............................. TTTCCCGTAAAAAAAATTAAAAAAAAAAATTAAAA 12816 30 100.0 37 .............................. TTAACTTATATCCAATATCGGATAAATGCCTTAAATT 12883 30 100.0 37 .............................. CATTAAACGATGTTTCTGCAACGATGGCTAGGTCATT 12950 30 100.0 36 .............................. GCGGATTTTCTTATTGAGAATGAAGACTACAGGAAG 13016 30 100.0 36 .............................. GGCATGAGCGTAACGTGGTATTGGGCGACTATCCAA 13082 30 100.0 36 .............................. ATAAGCTTCTCCTTATCTTGTAGCGAGATAATTAAA 13148 30 100.0 37 .............................. CCAATTGCCTTCTCTTTTATCTCCTCTGGTATCCCTT 13215 30 100.0 34 .............................. ACTGCAGGAAATGGCGAATTCCCCCTAACTCCAA 13279 30 100.0 38 .............................. TTATATATTGTTGCTAAAAAAGTAGCACTGTTCCACAA 13347 30 100.0 36 .............................. AAATCAATCCGGCAGACTTCTTCTTCATTATTCATT 13413 30 100.0 37 .............................. AGGGTAGTCCATAGAGCCGTGACCTCCGATATAAATA 13480 30 100.0 37 .............................. AATCTATATCAGATGGAGCGTCCTCCTTGATTTCAAG 13547 30 100.0 39 .............................. GATGGGATAGCAGAAGCTTTAAAGTTCACAGAATAAAAA 13616 30 100.0 38 .............................. AATATATCGTTTAATAATAAGAGTAATATATTACAATA 13684 30 100.0 35 .............................. ATAAAAAATGGAATTGATAAAAGGGATACCAGAGG 13749 30 100.0 37 .............................. CTTATTGCCTTCTCTTTTATCTCCTCTGGTATCCCTT 13816 30 100.0 37 .............................. GGATGGAAAGTTTAATGAGACTGGAGTGTTCACTTCC 13883 30 100.0 36 .............................. GAGTAGTACCACAGGGCTGTACGTTATCTGGGGGAA 13949 30 100.0 36 .............................. TACTCGACCCTTAAAGCGTAACTCCTTCAGGTGATA 14015 30 100.0 34 .............................. GCAGAACTCGAACATCTTGTATACGACAAGGAAC 14079 30 100.0 37 .............................. GCTGTTATGCTAACATTAGTATCATTGTATATATAAA 14146 30 100.0 36 .............................. ATAATGTAGGACCAAATTCCGGCGTATTGTACTACG 14212 30 100.0 36 .............................. TCTACAATCGAAATTTGTTGGAAATACATCACAAAA 14278 30 100.0 38 .............................. TTAAAAAAAGGATTTGAAATCCATGACGCCTATAACTT 14346 30 100.0 38 .............................. TCTGATTTTCTTATTGAAAATGAAGACTACAGGAAGAA 14414 30 100.0 38 .............................. ATAGATAAGAATTATCTAATGGAATCTCATCCAGTCTA 14482 30 100.0 34 .............................. TGGACATATCTAACAGAGAAGGAAAAGGCAATGC 14546 30 100.0 36 .............................. TGCGATTTTCTTATTGAAAATGAAGACTACAGGAAG 14612 30 100.0 36 .............................. ATTCTCCTCTGTTAGGGTATTGCTGCCTGAACTCTT 14678 30 100.0 38 .............................. TGTATTCAAAATCTGACCGATTTGTTCACGTATTTTCA 14746 30 100.0 36 .............................. TCTAAATTGCCCCAAAAACGCATGAAGTCATAATTG 14812 30 100.0 38 .............................. TCATCCAGTCTATATTCCTTCGTTGAAGGGCTATATAA 14880 30 100.0 35 .............................. TATATAGCAGATGACCCCAAAGACCTGCTAAACCA 14945 30 100.0 39 .............................. TATAAGCTTTTTTATAAGAATTCAATGCCAGAAAAGATA 15014 30 100.0 36 .............................. TAGAATGAAATACCTGAATGCAAACAAGCCTATATT 15080 30 93.3 0 .........................A...A | ========== ====== ====== ====== ============================== ======================================== ================== 72 30 99.9 37 GTTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : GAGGGAAACTGTTTACGTTTCTTCCTTGAGAAGGAAAGTTTCTAATAAGTTTCTAATACGTCTTGAGATATATAAAGTTGAAAAACAGATAATGGAGAATAAACAATACAAACCATATATTATGAGGGATTAAATTGTGGATTATACTTACATATGATATTAATGAAAAAAGGGTTGATAAAATTAGAAAGATTTCATTGCAATATTTAATTAGGATTCAAAATTCTGTATTTATAGGAGATATTGGATGGGCAAGCTTAAGAATTTTAAAAGAAAGATTAAAAAAAGAAATTGTTGAATCAGAGGATTCAATACAGTTTTTTATTCTTAGGGATGAAAAGCTTGTAAAGAGAATAAAGCTTGGAGTGTCATATGAATTCAGCAATATAATTTAACATATGATCAAACCTTTAAATACTCTTTTCCAATTATGAACTTTGAGTACTTTTTTATAAAATTGTCATAAGTTTTTTATTTATAATACAGATTATCTATAACGG # Right flank : CGAAATGAATATTCCACTGGATTATCTTCAGATATATCTGCATTAAAATTAACCCTTAATAGATCTATTCTATATTTATTTAAATCTGTTTAATTTTAAACTATTGTAATAATATAAACCTGTCTCTATACACATCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //