Array 1 495623-497374 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAD01000002.1 Listeria monocytogenes strain 18450-vaginal NODE_2_length_501143_cov_71.6347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 495623 36 100.0 30 .................................... TGCTCGTCTGTGCGTTGTATGCCCTTTTCA 495689 36 100.0 30 .................................... GGCGTGCCGCGGTGATAAAAGAAGTGGCCG 495755 36 100.0 30 .................................... TGCTAAAATCCTTTGTGACGTCCGCGACCG 495821 36 100.0 30 .................................... TGAATTTAGTGCCAAATTTAGATGATGAAG 495887 36 100.0 30 .................................... TATGAGTGCAGGAAATGTTGCACAGAAAAT 495953 36 100.0 30 .................................... GTTTTTAGATGGCTAAAGAGCCCAAGCGGC 496019 36 100.0 30 .................................... TTCTATGACTTTGAAGTTTTCAAACATGAT 496085 36 100.0 30 .................................... GGCGAAAATTATCCAAAGCGCTTCAAATCT 496151 36 100.0 30 .................................... TTACAACATTATAAATAAAAAAAGACCTCT 496217 36 100.0 30 .................................... CAAATATTAAAGGTTTTTTGTCAACTATGA 496283 36 100.0 30 .................................... GGGAAAGAAGAAATTTATGTCATTGATGAA 496349 36 100.0 30 .................................... CGCACATTATTACAAATCCCTTCCGCACAT 496415 36 100.0 30 .................................... TGCTTTAACTGTAGCCTTTACACTACTTTT 496481 36 100.0 30 .................................... AAACTCAATTGACAATAAATATACAGGTTT 496547 36 100.0 30 .................................... AGCATCTATGCACCAGATAACCAACGCGAT 496613 36 100.0 30 .................................... ACATACGCATACAGGTTTATGTGTGGAGGC 496679 36 100.0 30 .................................... CGCTTGATGTTCCCCCTCTGAAATATCAGA 496745 36 97.2 30 ...................................T TTTTAACGACTTTCGTTCAGGTCGAATGTT 496811 36 100.0 30 .................................... AGATTATCGATTCTTAGAACATACACACCT 496877 36 100.0 30 .................................... TAATGTCATTAGATTTTTTAGATAGTGTTA 496943 36 100.0 30 .................................... TCGCTTATAATCACATGATGATATAGCAGG 497009 36 100.0 30 .................................... TTATAGAATTGAGTTGAATTTGACCCATGT 497075 36 100.0 30 .................................... TTATAGAATTGAGTTGAATTTGACCCATGT 497141 36 100.0 30 .................................... TTGCTCTGTTTTCAATGATGTTTGGGAATG 497207 36 100.0 30 .................................... AATAGTAAATGTAGATGGTTCGACGGTAGA 497273 36 100.0 30 .................................... CCACTTTAAGCCCTCAGCACTAACAAACCA 497339 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATTTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGACAGATAAAAGGCTCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCGCTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGGTTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16056-16605 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAD01000012.1 Listeria monocytogenes strain 18450-vaginal NODE_12_length_27089_cov_65.859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 16056 29 100.0 38 ............................. GAAAAAAACGGCGAATCTGTAAGTATATGGGTAGATGC 16123 29 100.0 37 ............................. AGATACAATTCTTTGTTTGAGGCAAATTCTCTATTTT 16189 29 100.0 36 ............................. TTCGTAGTTTTGAACTCGCAATAACCGCTTTCGTAT 16254 29 100.0 37 ............................. CGGGTCAATGATGGTAATTTGGTCGTTGTCGTCTTCT 16320 29 100.0 35 ............................. TCTGTTTAAAGATAAATGCTGTAGAATGCTTCATT 16384 29 96.6 35 ..................A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 16448 29 93.1 35 ..........T...T.............. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 16512 29 96.6 36 ..............T.............. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATAG 16577 29 72.4 0 T.....A.......TCA.AG...A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 95.4 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGTGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGTTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //