Array 1 39763-36135 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOS01000007.1 Vibrio cholerae strain A12JL36W90 NODE_7_length_61195_cov_21.867800, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39762 28 100.0 32 ............................ ACTCTCCTTGACTGACTTTCTTGATCAATGTT 39702 28 100.0 32 ............................ TGAAGATCATAGGATTCGGTGTTGTCGCGATC 39642 28 100.0 32 ............................ TCAGAGCAATGAGCTAGTGCGGTTGATTTATC 39582 28 100.0 32 ............................ TTTACCCTCGTTCAATTGAATGTCTTTCGCAT 39522 28 100.0 32 ............................ TCAAACTGAGCGAGAAGAAATCATTCAGAACG 39462 28 100.0 32 ............................ TATTGAGCGCATCAACTTTGCACCTCAAACTG 39402 28 100.0 32 ............................ GCCACCCTCGCTTGTTTGAGTCTTAGATTTTT 39342 28 100.0 32 ............................ AATCGATAACATCGTTAACTGCATCAAAGCTA 39282 28 100.0 32 ............................ TTAAAGGGATCTCGACTGTTTGAAACCTTAAG 39222 28 100.0 32 ............................ ATCACCAACCGCAATGTGACTGATAGTGAGTT 39162 28 100.0 32 ............................ TAGTTACTTTGTTTGGGAAGCTCGCTGAAGTT 39102 28 100.0 32 ............................ TCGACGCTCTAAAGTCCAAACGTTATCGGGAT 39042 28 100.0 32 ............................ GCAAGCTAAAAGGCTTTGTCACAAGCCCGCTG 38982 28 100.0 32 ............................ GCCAAGTTATCCGGATAGCGTGACCATAAATG 38922 28 100.0 32 ............................ TTTTATAGATGAGGTGAAAAATAACGTGATTT 38862 28 100.0 32 ............................ ACACAAATAAGATTTGATGGAACGGTTGTTCA 38802 28 100.0 32 ............................ ATGGCATAAAGTGCGGCAGAAAATCTGGTGAA 38742 28 100.0 32 ............................ CACAAAAAGAAGCCGCCGTGCTTGCCAATGCA 38682 28 100.0 32 ............................ CTAAAGCGAATGAATGATCGCCAATTTCAAAA 38622 28 100.0 32 ............................ ATTTGGCTTTCACTGGCCGTGATGCGGTTAAG 38562 28 100.0 32 ............................ CGTGGCCTTCCCTCGTTGCCGAGTGAGCTAAG 38502 28 100.0 32 ............................ CGGAAGCGTGGTCGATGCAGGAGCCGCACAAC 38442 28 100.0 32 ............................ GGTTTTAGAGAAAGGCGTAAAAGCAACTCAAA 38382 28 100.0 32 ............................ TTTTTGTAGGCGTCTAACAGTTCATTTGCATA 38322 28 100.0 32 ............................ AAAAAGACAAAACCCAAAGAATGAGGCTTGCT 38262 28 96.4 32 .........T.................. TTAAAGGGGTCGGTGAAGAAGTGGAGCGTGTC 38202 28 100.0 32 ............................ ATCATAAAGAGTTCCATCACTGGTTCTTAGGT 38142 28 100.0 32 ............................ CGATGTTCTCGTGACCGATTTTGAAAACTCCG 38082 28 100.0 32 ............................ TTGCAACACGTCCGTATACCAGCGCTGAGTCA 38022 28 100.0 32 ............................ GTTAATTTTGGCTAGCGCTGCTGCTTCGTACT 37962 28 100.0 32 ............................ TGACTCATTGAGGCTAGTGACATTCTGGTACC 37902 28 100.0 32 ............................ ACGCTCGAACAAGAGCAACCGCTAGAGCAGGG 37842 28 100.0 32 ............................ TTAACCAAGTTTGGCGCGGACAAAACAATCCT 37782 28 100.0 32 ............................ GTCAGGCTGAATACGCGAACATCATCAGCATG 37722 28 100.0 32 ............................ ACTGAGAGCATGTGATTTACACAACCCACCGA 37662 28 100.0 32 ............................ AACATGAAGGGCTATGAAGGGATTGACGATTT 37602 28 100.0 32 ............................ ACCGACGACATTGGTCGCGTTTGAGCGATCCG 37542 28 100.0 32 ............................ GCTTCAACGTCCCCGCCCGTCTTTTGATAGAA 37482 28 100.0 32 ............................ GCCAAAGAACGTTAGGGAAACAAATCACAAAT 37422 28 100.0 32 ............................ AAAAAGGCCAACGCTTCCAGATTGGTGTAATG 37362 28 96.4 32 ...........T................ ACCCAAAAGCAACTAAGGAAGATTTATGACGG 37302 28 92.9 32 ..........TT................ TGTCGAGCTAACCACAGTGCGACTTTCCGCCT 37242 28 96.4 32 ...........T................ CTTGTTTGGTGGTCATTTCATACTCTGATTCA 37182 28 96.4 32 ...........T................ CGACAGAATAGGGGACGTCCGTTATACAAAGA 37122 28 96.4 32 ...........T................ TGATCCAAATCAACCACGAAAAGACTTTGATC 37062 28 96.4 32 ...........T................ TTCCAAAAGTTGCTTGAAAGTGGTGAGTTGTC 37002 28 96.4 32 ...........T................ TATCAAGACGTTATCGACCTATCCACTGGCAA 36942 28 96.4 32 ...........T................ CTGCTTGATGTTATCCACCATCAGAAAGGAAA 36882 28 96.4 32 ...........T................ TTTAGCGGCACTTTTTCTACGAATTAGCGTAC 36822 28 96.4 32 ...........T................ TGCATCGCCCACGCTTCCGGTGGTATCGTTAT 36762 28 96.4 32 ...........T................ ATAAGAGAAATCACTAACGCGGCCAACGTTAT 36702 28 100.0 32 ............................ CTGAATTGAAAGCGACCGTTATCAAGACTTTC 36642 28 100.0 32 ............................ TTGTCAACTGGCGAGGGCTTTATTTTTATGAT 36582 28 100.0 32 ............................ AGTTGGAACAGAGGCGGAAAAGCCGGACACAA 36522 28 100.0 32 ............................ TCATATTCGAGCCCAGACGCCCCCAGATTTGA 36462 28 100.0 32 ............................ TCAAACCTCAAGGCAGACAAAAACGAGGTAAA 36402 28 100.0 32 ............................ ATGGGTGGAGGCGAAGCCGCCACAAAATACAC 36342 28 96.4 32 ...........T................ TGAACAGCAGCTTTCGGTTACTCATGTTGCGG 36282 28 96.4 32 ...........T................ CAGATTCGGCGTTTAAGTGCAGCGCTTGATAT 36222 28 96.4 32 ...........T................ ACTTACCTGGGTTGGGTTTAGTGCGTGGGTCA 36162 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 61 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCGCAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGTTTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCACCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //