Array 1 145776-145015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVMM010000133.1 Escherichia coli strain MCH1 NODE_1_length_392453_cov_17.1714, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145775 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 145714 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 145653 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 145592 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 145531 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 145470 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 145409 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 145348 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 145287 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 145226 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 145165 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 145104 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 145043 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172922-171325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABVMM010000133.1 Escherichia coli strain MCH1 NODE_1_length_392453_cov_17.1714, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172921 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 172860 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 172799 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 172738 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 172677 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 172616 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 172555 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 172494 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 172433 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 172372 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 172311 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 172250 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 172189 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [172163] Deletion [172149] 172147 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 172086 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 172025 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 171964 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 171903 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 171842 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 171781 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 171720 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 171659 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 171597 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 171536 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 171475 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 171414 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 171353 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //