Array 1 279-1102 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIV01000009.1 Lactobacillus crispatus strain UMB0824 .16933_8_9.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279 29 100.0 32 ............................. TTAGTTCCTTAACTGCATCATTCAAAGCACCA 340 29 96.6 32 ............................A TCAATTGAAACTGTAAACATTATTCGATAACT 401 29 100.0 32 ............................. CACCCGTTGAGCCACGTTTAAGTAATTTGCTA 462 29 96.6 32 ............................C TTACTCGCTCTCTATTGTTTTGAAAATGATAT 523 29 96.6 32 ............................C TAAAAGTAATGCTTTTACCATCTTGACTATAT 584 29 100.0 33 ............................. TAAACATTACTTAGCATCTCCTTCCTTGGTAGC 646 29 100.0 32 ............................. ACCTTGTGATGGACTTTCAGCACTAAAGTATC 707 29 96.6 32 ............................C CAAGATCAAGCGCGCTAAAGACAAGCAATATG 768 29 100.0 32 ............................. TACCCTCAAAGTCAACTTTGAACTGCTTAGCG 829 29 100.0 32 ............................. TACAATATAAGAAGTTTAATTAAATTAAGATG 890 29 96.6 32 ............C................ ATGGGTGAAATCATCAAAAAAGGAGCTTAGAA 951 29 96.6 32 ............................C ACTGTAATTGAAGATACAAAACTATCGTGGAA 1012 29 100.0 32 ............................. GTACAAAAACTCAGGTTTTGTCTCACATATTA 1073 29 86.2 0 .............A...........AA.A | C [1095] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.6 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACTG # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15919-16252 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIV01000031.1 Lactobacillus crispatus strain UMB0824 .16933_8_9.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15919 29 93.1 32 ............AG............... TAAGCAGGCACAACAACAGATCAGTCGCTTAC 15980 29 89.7 32 ............AG..............C TCAACAATCATTAGCCTTGCCCCAAGGCTTGC 16041 29 100.0 32 ............................. ATGCTGGTCGGATCGCTCGATTTATGCAAGGT 16102 29 96.6 32 ............................C TTGTTGACGCTCCCACATCAAATGCAAAATCA 16163 29 100.0 32 ............................. GAGCCTTCCTGACGGCTGACTACGTGACACTA 16224 29 79.3 0 .............GA........T.AGT. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAGGCAGAAATGCTTCTTTTTTTATTTGGAGTGGCTTTTTTGTAATTATGGCTTTATATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : TATATGGAGAAAGATATGTTTACAAAGCAAGAATTTAAGCCGCAGGGTTATAAGGAAAATGTCGAAAGGCTTAAACTTTTTTATCACAGTGAATTTTATCAAGACTTGAAAAAGTTATATCCTAATTATTTGAATAAAGTTGAAGATGCTTTATATCAAGATCCGGATTCTAGTGATGAATTTCTTTATATTGCATTAAGTGAAAAATATAAACTCGATGTTTCTAAGAAAAATAACTCTTTTTGTCTTATTGATAAGGTGGGAAACAGTGAAATTGCATTAGGTGCGGATGCTATTTGCGGAGTAAAATGTTTAGCTAAATACTATCCTGATCTCGATGACTGGATCGATGCTTATGAAACAATACGAAGTCAAACATCCCTGCATTTTGTATGGCCAAGACATAAATTACCAGCGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17149-17360 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIV01000031.1 Lactobacillus crispatus strain UMB0824 .16933_8_9.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17149 29 100.0 32 ............................. TTGTAATTGTTTTTCTAGTTCTGATTGAGGTA 17210 29 100.0 32 ............................. TTTCACCATTGATGTGGTGCGTCCTGTAAACG 17271 29 100.0 32 ............................. AGTAGCTGTCATTGTTAAAAATCAATATCAAA 17332 29 79.3 0 ......................CT.AATA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTATTCTCCACACATGTGGAGGTGATCCC # Left flank : CAAGACATAAATTACCAGCGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAATATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCTTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTAACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGATGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTTACTTCAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.10,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 20088-21359 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKIV01000031.1 Lactobacillus crispatus strain UMB0824 .16933_8_9.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 20088 29 100.0 32 ............................. ATCTCACTGATTGACCTCCACAAGGATAGCAG 20149 29 96.6 32 ............................C CGATTAGCGATGTTGATTTAGTTGAAGCAACA 20210 29 100.0 32 ............................. AAACTGGATTGATTCCACTATGGGGAAAATGA 20271 29 96.6 33 ............................C GTTGTTGGCATGAAGCCCTACATCGAGGGTTTG 20333 29 96.6 32 ............................C TGGTATTTTTTAGTCGCTGAAAGTGTCTATAT 20394 29 100.0 32 ............................. TTTTGCTACGGCGGAATTTAGTTCAAATACGT 20455 29 100.0 32 ............................. TTTGCTGTCAATCTTTAATAAATTGTCTTGTA 20516 29 96.6 33 ............................C GAAGAATTTATCACGTTCGATCAGTTAAAACGG 20578 29 100.0 32 ............................. CAGATTATAGATGGTAACTTAAGCGTGATTGG 20639 29 100.0 32 ............................. CAGGAAATGCGCCAGGCTTTATTAATCGGACT 20700 29 100.0 32 ............................. AACTGCTTATCAATCGTGATCGTTCTTTTTGA 20761 29 96.6 32 ............................C TAGAATTGTTGTCGTCTTACCTGTCGCCGTTT 20822 29 96.6 32 ............................C AGAACACACCGCGACAAACAAAAAATATATAA 20883 29 100.0 32 ............................. ATTAAAACTGATTAGCAAACTTAGAAAAAGTA 20944 29 96.6 32 ............................C AACAGGTTGCGGTTAACCCGAATAGAGTTGTC 21005 29 96.6 32 ............................C ACGATATACGCGCGGTTGCCCGTCACATATAC 21066 29 100.0 32 ............................. ACGTACAAGATTGATCCACAAGGATCAGCTAC 21127 29 100.0 32 ............................. ATATCCTAGTAGCTTTTCTACTTCGTAAAGGT 21188 29 96.6 52 ............................C CAAAGAAGAAGATCAGAAAATAAGTCAGTGTATTTCAGAACACCAGAATTTA 21269 29 93.1 32 ...........AC................ CATTACGTCCTTGACCGGGTAAATCTCTTAAT 21330 29 82.8 0 ...........AC....T......T.A.. | A [21351] ========== ====== ====== ====== ============================= ==================================================== ================== 21 29 97.4 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTATAAATGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGTTGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATAGAGACTGTCAAGAAGTTTGTGTAAATAATCTCTCTCGTTGATTGACTTTTTTATTTATCTTTTAATCAAAATAGGATTCTAGAGTGTCTCGAACTTGCCCAAATCCTTTATGAATCCTGTTAAAGTAACGGTCATTGTAATCCATTGCCTGAACTCCAATAAAGGTGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //