Array 1 221-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806940.1 Olsenella sp. HMSC062G07 Scaffold53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 220 29 100.0 33 ............................. ACAGCCTCCTGAGCCGTCATCTTCTTCAACAAG 158 29 100.0 33 ............................. ACATGAAGACCCATAAAGAGGCGCGCCGGGGGC 96 29 96.6 33 ............................A ACCACGACGACGTATGACGAATTGGGCCTGCCG 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTGCTCCCCGCACATGCGGGGATGATCCT # Left flank : GCGG # Right flank : TTTGTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 299459-300230 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806944.1 Olsenella sp. HMSC062G07 Scaffold78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 299459 29 100.0 33 ............................. GTCACTTTGCCGCTGTAGTAGCGCGTAACGTGG 299521 29 100.0 33 ............................. CAACCAACCACCAACCAACGGCCCCTGCAATGG 299583 29 100.0 32 ............................. TGAGAGCGTGTTGCTATCGATCATGGTGAGCG 299644 29 100.0 33 ............................. CCGACGTCGGACAGCGCGTCCTTCCATCCTTCG 299706 29 96.6 33 ............................G TCGCACTCGGCGTCCTCGCCGATGCCCTCGGCG 299768 29 100.0 33 ............................. TTCGCCGTGATTGAGGCGACGCTGCCGTCGGTC 299830 29 96.6 33 ............................T ACTTGACTACCTAGGTAGTCGGGTATACTATGA 299892 29 100.0 33 ............................. AAAAACCAAACAATTTTAAATGGAAGCGTTGCG 299954 29 96.6 33 ............................T CCCACGCTGGAGGCGAGCGAGAACTGGTGGCCG 300016 29 96.6 33 ............................T CGAATACGGATATTGCGACGAGGGCGGAAACGG 300078 29 100.0 33 ............................. GGCAAAAAGGCCGAAAACGCCCCATTTTGCAGC 300140 29 100.0 33 ............................. GCGCTCTCCACTGGCGGCCTTTCCATCAAGTCC 300202 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.0 33 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : AGGTCCCTTCTGGACGGTCGTATGGCCGAGGTTTGGGGGAAGGTTGAATGGTTGTCATAGTGCTGACCGCCTGCCCTGCAGGCCTGCGAGGTGACTTGACGAGATGGCTGCTTGAGATTTCTCCCGGCGTGTACGTGGGGCACCTCTCTGCCCGCGTTCGCGAGGAGCTTTGGAGTCGTGTGACCTCCCTGGTGAGGGAGGGAAGGGCGATGATGGTTCATTCGGCACGGAACGAGCAGCATCTGGCATTCAGAGTCTTTCGACCAGACTGGGAGCCTGTGGACTGTGAGGGCGTGACCCTGGTGTCGCGGAGGTCGGACGATGCGTATCATGGGTTCCAGGGCAAGATGAAGCCCGGCTGGAGCCATGCGAGCCAATATAGAAATGCTCACAGGTTTCGTGCTCAAGGAAAGAAGAACTATTTTTTGCCAGACGAGCCGGCAGATGAGAAAGTGAACGGATAAGCCGCTGCGGTATGCTTGACGCGCTGGAAAATAAGC # Right flank : TAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 215-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806950.1 Olsenella sp. HMSC062G07 Scaffold159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214 29 100.0 33 ............................. GGGTCATCCTCCGGCTCGAGCATCGAGGCGGAC 152 29 100.0 33 ............................. GAGAGCACGCCGTCGGTCGGCGCGAAAACCTCA 90 29 100.0 33 ............................. TTGGACGCCATGACCGTGAACGGCAAGCACTTC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : GC # Right flank : C # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 911-510 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806952.1 Olsenella sp. HMSC062G07 Scaffold175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 910 29 100.0 33 ............................. GACGTCATCGGCGAGGACGGCGCCGAATACTAC 848 29 96.6 33 ............................T GAACGCCGTCGTGAGCCGCAGATTCTCCAGCGA 786 29 100.0 33 ............................. GGCGCCCTAACGCCGGCAATGTCTGGCGCGTAC 724 29 100.0 33 ............................. TGTGCTCGTTGATTTCACGTACTCTGCGATTGG 662 29 100.0 33 ............................. TCGCCCGTCCGCTCGTGCCGTAAGGATTTTGCC 600 29 100.0 33 ............................. GGCGAGACGATGGTCCTCAAGGCCAAGACGGTC 538 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 33 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : GTGCTCCCCGCACATGCGGGGATGATCCCGACGCCGACGCCAAGGGCGACGGCCCATACAACGTGCTCCCCGCACATGCGGGGATGATCCCGCACCCGCGTGGGTGCGCCTGTCATGGGCGCACGTGCTCCCCGCACATGCGGGGATGATCCCGCCGTACCCGTCGGGCTTGGCAGAATCGTCGGAGTGCTCCCCGCACATGCGGGGATGATCCTACGATTCCCTGCTAGACGATCGTCCGGTCGCGAGTGCTCCCCGCACATGCGGGGATGATCCCCAAAGCGATGTGAAGAGATGGCCGCAAGGAGGGGTGCTCCCCGCACATGCGGGGATGATCCCCACTCCTCGACGCCGCTCGGCGTCACGGCGTCGGTGCTCCCCGCACATGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CGATGCCGCCCACGCCGGTGCCCTCCAGGTACCGTGCTCCCCGCACATGCGGGGATGATCCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCGGTGCTCCCCGCACATGCGGGGATGATCCCTTGCGGTATAATCTCTTGTGGCATATGGACTCGTGCTCCCCGCACATGCGGGGATGATTCCTAGCGTGTGCGGCAATTGAGCAATTAACGAACGGTGCTCCCCGCACATGCGGGGATGATCCCGCAAGCGCGATACACCCGGCTACGGCGAACGCGGTGCTCCCCGCACATGCGGGGATGATCCTGCGTAGGCGAGCGCGGGCAATGCCGCTACGATCGTGCTCCCCGCACATGCGGGGATGATCCCTCAAGGTGGTGCTTCCTAGTCTCCAATGGTGCCGTGCTCCCCGCACATGCGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1969-1072 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806952.1 Olsenella sp. HMSC062G07 Scaffold175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1968 29 96.6 33 ............................T AAGCAGGCGGCTGTAGGCGGTAGCAATTAGTAG 1906 29 96.6 33 ............................T AAGGGCCACGGATTACGGCCTTTGGTACTAGCA 1844 29 100.0 33 ............................. GACGCCCGTCGCGAGGCCGTTCTGGAATGACGC 1782 29 96.6 33 ............................T TGGTTCGAGGCCTTCCACGTCAGGGCGGTCAGC 1720 29 100.0 33 ............................. TACACGATGCTCGACAACCTCAAGCTTGGCTAC 1658 29 100.0 33 ............................. TAAGGGAGACACAATGCCGCACACCACCGATAC 1596 29 100.0 33 ............................. CACCTTCGCCGCGAGCACGCCCGCCCAGCTGCG 1534 29 96.6 33 ............................T CCGTATCCGTTGCCGTCGCCGAGGCCGCAGCCG 1472 29 100.0 33 ............................. TTCGCCCGGACGGTCTCCGGCCTTGACATAGCC 1410 29 100.0 33 ............................. GACGCCGACGCCAAGGGCGACGGCCCATACAAC 1348 29 100.0 33 ............................. GCACCCGCGTGGGTGCGCCTGTCATGGGCGCAC 1286 29 100.0 33 ............................. GCCGTACCCGTCGGGCTTGGCAGAATCGTCGGA 1224 29 96.6 33 ............................T ACGATTCCCTGCTAGACGATCGTCCGGTCGCGA 1162 29 100.0 33 ............................. CAAAGCGATGTGAAGAGATGGCCGCAAGGAGGG 1100 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 33 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : TGCTCCCCGCACATGCGGGGATGATCCCGAGGCCGTGTCGAAGATCCTGTCGCGCTGCGCCGTGCTCCCCGCACATGCGGGGATGATCCTCATCTACTAGAGTACATATGTACACAAGCGCGAGTGCTCCCCGCACATGCGGGGATGATCCTGTGCCGCTTACATGTGGGGTATCTCCCATGCTTGTGCTCCCCGCACATGCGGGGATGATCCTCCGAAGCTGCCGTCCCAGGACACGGTGGAGGTTGTGCTCCCCGCACATGCGGGGATGATCCCGCGGATGATTGCGTCAAGCAGCTCGTCCATGGAGTGCTCCCCGCACATGCGGGGATGATCCCCAGCTTCATTAGGCCGTCGCCCCCGTGAGCAGCGTGCTCCCCGCACATGCGGGGATGATCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CACTCCTCGACGCCGCTCGGCGTCACGGCGTCGGTGCTCCCCGCACATGCGGGGATGATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCACATGCGGGGATGATCCCGACGTCATCGGCGAGGACGGCGCCGAATACTACGTGCTCCCCGCACATGCGGGGATGATCCTGAACGCCGTCGTGAGCCGCAGATTCTCCAGCGAGTGCTCCCCGCACATGCGGGGATGATCCCGGCGCCCTAACGCCGGCAATGTCTGGCGCGTACGTGCTCCCCGCACATGCGGGGATGATCCCTGTGCTCGTTGATTTCACGTACTCTGCGATTGGGTGCTCCCCGCACATGCGGGGATGATCCCTCGCCCGTCCGCTCGTGCCGTAAGGATTTTGCCGTGCTCCCCGCACATGCGGGGATGATCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2470-2069 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806952.1 Olsenella sp. HMSC062G07 Scaffold175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2469 29 100.0 33 ............................. GAGGCCGTGTCGAAGATCCTGTCGCGCTGCGCC 2407 29 96.6 33 ............................T CATCTACTAGAGTACATATGTACACAAGCGCGA 2345 29 96.6 33 ............................T GTGCCGCTTACATGTGGGGTATCTCCCATGCTT 2283 29 96.6 33 ............................T CCGAAGCTGCCGTCCCAGGACACGGTGGAGGTT 2221 29 100.0 33 ............................. GCGGATGATTGCGTCAAGCAGCTCGTCCATGGA 2159 29 100.0 33 ............................. CAGCTTCATTAGGCCGTCGCCCCCGTGAGCAGC 2097 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 33 GTGCTCCCCGCACATGCGGGGATGATCCC # Left flank : CAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCACATGCGGGGATGATCCTAAGCAGGCGGCTGTAGGCGGTAGCAATTAGTAGGTGCTCCCCGCACATGCGGGGATGATCCTAAGGGCCACGGATTACGGCCTTTGGTACTAGCAGTGCTCCCCGCACATGCGGGGATGATCCCGACGCCCGTCGCGAGGCCGTTCTGGAATGACGCGTGCTCCCCGCACATGCGGGGATGATCCTTGGTTCGAGGCCTTCCACGTCAGGGCGGTCAGCGTGCTCCCCGCACATGCGGGGATGATCCCTACACGATGCTCGACAACCTCAAGCTTGGCTACGTGCTCCCCGCACATGCGGGGATGATCCCTAAGGGAGACACAATGCCGCACACCACCGATACGTGCTCCCCGCACATGCGGGGATGATCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1197388-1197555 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806951.1 Olsenella sp. HMSC062G07 Scaffold164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 1197388 35 100.0 32 ................................... CTTCGACACGGTTCTCGGCATCTACGAGCAGG 1197455 35 100.0 31 ................................... GTCTCCGCACCCGTATCCGCTTTTGCGCCTG 1197521 35 91.4 0 ................................NNN | ========== ====== ====== ====== =================================== ================================ ================== 3 35 97.1 32 TCTTCGCGGCCTCTCAATTCCCCAGGTGATACAAT # Left flank : CCAGACCTCCCAGCGCTCCCGCGCCCATGCCGCGGGGGTGGAAACCATCAGCCCCAGGGGCGAGAGTCCCCCCTCGGCAAGGGAGGTGCTCGCATCCACCTGCCGTTGGAAGTTGGGAACCAGCAGCACCGCGCGGCCGCCGGCGTGCAGGGCCTCCCCAAGTACCTCGCGTGCGCACGAGCACACAACCGTCTCTTCCCTCGTCCAGACTATGGTGAGCGACATGACACTCCCTGCCGTTGGTGGGTGTGGCGCGTCGTGCGCCACACAAGAAGCTACGTGCAATATGGTAGCGCGTGCCCCAGACACACCTGCCGTACACGCGGGGCATGCGTAACGCACGGGCGCACGCGGGCGGATATCGCATGGGCGGATATTCTTGATGTACGCAGGAAGTGCACGGGAGGGCGGGGCGCTGGCGGTCTCGGGCGGCGACAGGCGCATTCCAGCGGGCGGGGCGGGACGGCAATATTCTCAGCCGTGCAGTATGCGGTATGCGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGGCCTCTCAATTCCCCAGGTGATACAATCCATACCGTGGTCCCGTCTACCAGGCGATAGTCTTCGCGGCCTCTCAATTCCCCAGGTGATACAATAGTGCCATGGTAGTTCCTTTCTGTTGGTTTAGTCTTCGCGGCCTCTCAATTCCCCAGGTGATACAATCCCTGGGGGTGGCGGATCTCTTGCTCGGAGGTCTTCGCGGCCTCTCAATTCCCCAGGTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCCTCTCAATTCCCCAGGTGATACAATTGTGAGACGAGGCGAGGCGCATGAGACACGGTCTTCGCGGCCTCT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCGCGGCCTCTCAATTCCCCAGGTGATACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1197884-1197649 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806951.1 Olsenella sp. HMSC062G07 Scaffold164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1197883 36 88.9 30 NNNN................................ CTCCGAGCAAGAGATCCGCCACCCCCAGGG 1197817 36 100.0 31 .................................... TAAACCAACAGAAAGGAACTACCATGGCACT 1197750 36 100.0 30 .................................... TATCGCCTGGTAGACGGGACCACGGTATGG 1197684 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 94.4 31 ATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGAC # Left flank : ATTGAGAGGCCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCACCTGGGGAATTGAGAGGCCGCGAAGACTCTCCCACTTCAACACCCGCTCTACAAGTCATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACTCCGTGGCGCGTGTCGTTATTTGTGCCACAATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACCACAAAGGTTGTCGTGTCCTCGCGCACCTCATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACCGTGTCTCATGCGCCTCGCCTCGTCTCACAATTGTATCACCTGGGGAATTGAGAGGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATCACCTGGGGAATTGAGAGGCCGCGAAGACAGGCGCAAAAGCGGATACGGGTGCGGAGACATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACCTGCTCGTAGATGCCGAGAACCGTGTCGAAGATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGATCGCATACCGCATACTGCACGGCTGAGAATATTGCCGTCCCGCCCCGCCCGCTGGAATGCGCCTGTCGCCGCCCGAGACCGCCAGCGCCCCGCCCTCCCGTGCACTTCCTGCGTACATCAAGAATATCCGCCCATGCGATATCCGCCCGCGTGCGCCCGTGCGTTACGCATGCCCCGCGTGTACGGCAGGTGTGTCTGGGGCACGCGCTACCATATTGCACGTAGCTTCTTGTGTGGCG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1198208-1198040 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806951.1 Olsenella sp. HMSC062G07 Scaffold164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1198207 36 100.0 30 .................................... TCCGTGGCGCGTGTCGTTATTTGTGCCACA 1198141 36 100.0 30 .................................... CACAAAGGTTGTCGTGTCCTCGCGCACCTC 1198075 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 ATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGAC # Left flank : CAGGATTTTTGAAAAACGAGAAAATGACAGGCAGTTCTATGAGCAGCAAGCATTTTTCTGAGCGGATAGCCAAGAAATCCCCTCGTTAGAGGGGCTTTCTTGGCGGTTCATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACATTGTCGGGACAGGAGTCGGGACAATTGTCATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACTTTCTCCCGACATAGGTACCGACATAGGTAATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACCAGTGGGGCCAGCGGACTCATGTTCGAGTAATTGTATCACCTGGGGAATTGAGAGGCCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCACCTGGGGAATTGAGAGGCCGCGAAGACTCTCCCACTTCAACACCCGCTCTACAAGTC # Right flank : CGTGTCTCATGCGCCTCGCCTCGTCTCACAATTGTATCACCTGGGGAATTGAGAGGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCACCTGGGGAATTGAGAGGCCGCGAAGACCTCCGAGCAAGAGATCCGCCACCCCCAGGGATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACTAAACCAACAGAAAGGAACTACCATGGCACTATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGACTATCGCCTGGTAGACGGGACCACGGTATGGATTGTATCACCTGGGGAATTGAGAGGCCGCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATCACCTGGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTATCACCTGGGGAATTGAGAGGCCGCGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 24062-23228 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806930.1 Olsenella sp. HMSC062G07 Scaffold18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24061 28 92.9 34 ...........AC............... TCAGCGCCATATCGCAGGTGGACGGCGGAATCGA 23999 28 89.3 34 .........A.AC............... CTCCACGATCACGGACCCGGGGTCTCGGGCGTCG 23937 28 92.9 34 ...........AC............... CGGACTCGGCGCTCATTGCCGCGGCGGTGTCTGC 23875 28 92.9 34 ...........AC............... GTCGCACTCGGCGTCCTCGCCGATGCCCTCGGCG 23813 28 100.0 34 ............................ TCAGCATGTCAGATGCTAATACCTGCGCAATCTC 23751 28 100.0 34 ............................ CTACTAGCGCCCGCGTCCTAAGAAACGCAAAGAA 23689 28 100.0 34 ............................ CAGGAAGCTCGACGAGGACCGCAGGCAGCTCGCG 23627 28 100.0 34 ............................ TCGCAAGCTCGACGAGGACCGCAGGCAGCTCGCG 23565 28 100.0 34 ............................ CGGTATAACAGTAGGCAACGCAAGCCAAACGGTT 23503 28 96.4 34 ............C............... CCCGCCTGCCGCCCCGCAGCCGCCAGCGCCCGCA 23441 28 100.0 34 ............................ TTGACCATGCCGGCGGCCGCAATGACGGTCTGCA 23379 28 100.0 34 ............................ GTGAGCTACTACCACCAGGACGAGAGGGACCTGG 23317 28 100.0 34 ............................ CGCATATGAATCAAAGTGCACCATCTCTTGGAAC 23255 28 96.4 0 ............C............... | ========== ====== ====== ====== ============================ ================================== ================== 14 28 97.2 34 GTGCTCCCCGCGTATGCGGGGATGATCC # Left flank : CACTT # Right flank : GGTCGTGGCCAAAGAGCAGATGACCGCATCCAAGTGCTCTATGATTTCCTTCCGGGCGCTCTCGGTCATGCCAGCCGCGTTGTGCTCCCCGCGCGAAGCGGCTCACCTGTCTGGATTTTGCCGGATGATATACGTAGGGGGGCGCTTTGGCGTTGGCGCCCTGCGCGCCTTTGCCGGAAAGTGGGGCGCCCCTCTCATCTTCGCCTCAGCAACTCAGAATGATGTCTGTGGCCAACTGGCAAGTTAGGCGTCGTCAATGCGCATGACTTCGTCAACCATCGCGACGACTTCTTCAATCACATGGTGACATCGGCCATCGGAACCATTTCACGCGCTGTCCGCCCTTGTCCTGGGAATGGGGCTATCTTTGCCGAAGCCGATGTAATAGCGGTAACTTTTGCCAATGTAGTAGTTCTCCGTGAGTTCGCAATAGCCGGCGCTCGTGTCACGCGTGAGTCGCGTGCGTTTGAGTACGGGCTCACGTCGTCCGATGCCAAGGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGATGATCC # Alternate repeat : GTGCTCCCCGCACATGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //