Array 1 43947-44817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIPX010000020.1 Anaerostipes hadrus strain MSK.9.9 NODE_20_length_62012_cov_163.755, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 43947 30 100.0 33 .............................. TGTTGATTTACCAAGAGAAAAGCGTGTAGAGAT 44010 30 100.0 35 .............................. TCGATCTTTTGCTGTTCTTGCCTGTCCTGATAGCA 44075 30 100.0 35 .............................. GTTGAAAAAGAACCATTTCATTTTCTTGCGATATC 44140 30 100.0 35 .............................. AACATTATACAGGAAGTGCAAGCCAAAATAAAAAA 44205 30 100.0 36 .............................. ACCATAATTGTTTGATACCCTTTTTGTTCGTTTCTA 44271 30 100.0 34 .............................. AATATCCTAAAGACTGTAGTTCTTCTTTAGAGAA 44335 30 100.0 34 .............................. GACATTTCTTCCTGCTCACTTTCTCCCCATTCTC 44399 30 100.0 36 .............................. TCTTTCTTTGTTTTTGTAATCGTGTAGCTCTTAGTT 44465 30 100.0 35 .............................. CACTCTAAGTAAATTTTACTTAATAATCTTGCTTT 44530 30 100.0 34 .............................. AAGTAACAAAGAAAAAGAAGAAGGCGTTTACAGC 44594 30 100.0 33 .............................. TCTATTCCCCTTTTGTGTATTTATTTCGCCGTG 44657 30 100.0 35 .............................. GTAGCTTAAGCAGCACATACTATGTACAGCATTGG 44722 30 100.0 36 .............................. CTTCCTAAAAATTGCTACAAGGATGTCAAATTAACA 44788 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ==================================== ================== 14 30 99.8 35 GTTAAACAATAACATGAGATGTTTTGAAAT # Left flank : TAGTATTGTTACGATTACGAATGGGAAGGTGGATGTGTTGGTGAATAAGAAGGATCTGTCGAAGGTTGAGAGAAGTCAGATAGAGGATATTGTTGTTAGGAAGGTGGGGTGCCAGTTGGGGGATGTGGTGATTAGTTCGATTAAAACGGAGGAGTAGGTGAAAGTGCATATGGAATAGATGGTTGGGTTCTCTCTGGATGATGTTCTTGGATGATTTAGAATATTGTTTGGAGAGAATTTTATGTTTGTATATTGATTTGTATATTAGGGTTGCATATTTGATTGATTGGATTCATAATAGGAAGTGTTAAGAAACATGGGGAAATGAAGTTTTTGATATTTTACCAAGTGATTTTTTGAAAAAGTAGTAAAAACGGCTAGAATACGTTGTTTTTCAAGAAAGGTTAAAATTAGTAAGGGGGTTGGTAAAAATATTGAAAAAGCTTATAAAATCGTTCTTTTTTGTAAAAAATCTATTTAAAAATAATGATTTTTCCTTG # Right flank : TACCTCTAAGGTCGGGGATGAATTCGCTCTCACCATTAGTTAAACAATAAAATAAATTTATAAGCACATTTGATTAATTTCTAATTTTAAGGAGGAGTCTATGAGAGTTAATGGAACATTAATCAATTATTATTTCCATTGTAAAAGACAGTGTTATTTACATGGAAATAGGTTGAATCTTGAAGATAATAGTGAAATCGTACAAATTGGAAAGGCAATTCATGAAGAACGATTACAAAGTTCGAACAGTGAAATAGCAATTGAAAATATTAAATTAGATAAATTAACAAAAGAGTATTTAACAGAGGTAAAAAAATCAGATGCTGATGTAGAAGCAGCAAAATGGCAATTATTATATTACCTAAGTGTTTTAAAAAATAAAGGAATTTATCGAAAAGGGAAACTAGAATTTGTTGAAAAAAACAAATCTAATAAAAAAGTAGTAATTTTGGAATTAACAGAGGAGAGGGAGAATGAATTAAAAAAAATTATTGAATCAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAATAACATGAGATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 26157-27222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIPX010000006.1 Anaerostipes hadrus strain MSK.9.9 NODE_6_length_104819_cov_296.768, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 26157 36 100.0 37 .................................... TGGACCTTTACCAACCAAAACCACTTCATGTAAATCG 26230 36 100.0 38 .................................... GGTCAATTCGTTACTATCTTGCATTTCTTCGTACATAT 26304 36 100.0 36 .................................... ACATATTATGAGGCGATGATACTGCCAGTACTTTCT 26376 36 100.0 36 .................................... ATTGACTGTTCGTCATCTGTCAATTCAAGTGATTCA 26448 36 100.0 34 .................................... AAATCTGGCTTGCACCATGTAATTGTGAATCTTT 26518 36 100.0 37 .................................... ATTAAAATCTGGTTGTAACCATGTAATAGTAAAACGT 26591 36 100.0 36 .................................... AAAATCTTGATTTTCTGGACATTCATCGCATTTCAT 26663 36 100.0 38 .................................... GGCTTGCACCATGTAATTGTAAATCGTTCTGGGATAAA 26737 36 100.0 41 .................................... TCTCTTTCTTTTTTTAATTCATCTGTTTTCATGATTTTTCT 26814 36 100.0 37 .................................... CCTCTGCGTAGTACGCATATGAAGCATCATTGATTCT 26887 36 100.0 37 .................................... CTTCATCTGTAAGTTCGACTGGATAAGCAACTACATC 26960 36 100.0 38 .................................... ATAAACTTACAAATTGTGATCACTGCTTCTTGTTCACT 27034 36 100.0 39 .................................... ACAAAGCTTATTTTTCCACAATCACATACACATTTCCAA 27109 36 100.0 42 .................................... TCAATTGCTTCTTGTTGTGTTTTATACTTGCGAAAAACTCCG 27187 36 94.4 0 ..............................AG.... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 99.6 38 ATTAAGAAAATAAAAGCCCCGATAGGGGACGAAAAC # Left flank : TTGACGAGAGTATCAATACGTATTATGATGAAACTATTCTGGATGCAATCAATCATTTTTTAGAAAGTTATTATCATTTCCTGAATGGATTTGGACCTGTTAATGAAGAACAGGATATTCTGTATTTAGGCGGAGGAACCGGTTTTGCAACGAAAACAATTCTTTATGGAATTTTCTCAAAGAAAGATGCTGTTCGTGTGATTAGTAAAATATTTGATAAAACTATTTCTAGGAAAAAGAACGAAAAACCGCAACATATAAATGATATTCGTCTAGGTGTTTCACCTCATATTAAAAAGTGCACCGAGTATGCAGGACGTGAATATGAATTCGGTAAGTGCAAAGTTTATATAGAAGAAATATGATTTTGCCCCGATGACCTGTTTATGCGGTGTAGAGCCTTATTTTGAATAAGAAAAAGATAAAAATTTATCTCAAAATAAGTTTACACCGCAAAACATCTTTTTAACCCGCATAAATACAAGGATTGCAAGGCCAGG # Right flank : CTAAAAATCATATATTATATACTTACCTACTTTTTATTGTAATTCACTCAAAAGAACTCTAAAAATTTTCATGATTAGTAGAGAAATAATCGTTCATTATTAAAAAATATGTTAAAATAACTTATAGACACTCTGATAAGGGACGAAAAAAGAACAAATTTATTATAGTGTAGAAAAATCTTGAAGATAAAACACCCCGACAGGGGACAGAAGAATATAACTTATTCTAGGAAAGGAGTGCCTATGTCATGTTTATATATTACTGAAAATGGGTCTAAAGTCGCTGTAAAAGGTGGGCATTTTATTGTAGAATGTCAAGACGGATCAGAACGCCTTGTTCCGAAAGAAACGCTTGAATCAATTGTGATATTTGGAAATGTTTATTTGACAGTACCATGTATTAAGGAATGTCTGGAGCGAGGAATAGCAGTATCCATGTTTTCAACAAAAGGAAAATATTTTGGGCGGATTGAATCAACAAATCATGTGAATGCAAAGAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAGAAAATAAAAGCCCCGATAGGGGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 476-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIPX010000058.1 Anaerostipes hadrus strain MSK.9.9 NODE_58_length_9571_cov_206.405, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 476 30 100.0 39 .............................. ATTTATTATAAAAGTGAAAAAGCGGAAAAAATATGGTTG 545 30 100.0 35 .............................. GTTGCAGTGATCGTGTGGTTTTCACCGTATCCGCA 610 30 100.0 35 .............................. CTGTCAAAACAGATCTGTTCGATAAATTCTTATTT 675 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 100.0 37 GAATTAATAGAATCATAATGGAATTTAAAT # Left flank : TAATAAGCCCTTATAGGGCTAGTACAAACCACCGGCTAAGCCGGTGGTTTTGATTGAAAATAAGCCTAAAAATAGCTGTGCCCACGTCATGCCCACGGAAATTTTCTCGCGTGGGCATGACTTTTATAAAAATGACGATAAATTGGATTATTCAGACGGTGATATTTGATGCATATATGACTGTATAGTGTTTGCTCGAAAAGTATATATAATGAATGCGTGTATTTAACTTGCATATTTAGCAAATAAGTTTCATAATAGAATGTGTCGAACAAAATCAACTTGAAAAATTAGGGGTTTCTGTCGACCCCTGATAGTGCAAAAAATATAGGGGATCGACAGAAGGCGGAAACGCCTAAAATAGGAGGTGTTGCAGAAATATATGATTAGGGACAAGAAAGAAATGTTGAATTTTGAAGAGGTCGACAAAATAGAGACGTTTTTTGGCTTAAATAAGGGGATGATTTTGGGACGGG # Right flank : TATTGGAATCAGGCTGTCCTGTAGTTGATATGCTCCCTTCTAGGTCGACAAGTGAAATAATAAAAACTTGTCACTTAGGAGGGAGCATATTTTATGTCTAAAAGAAAAGTATCTGTTGAGAATAAGATATATGCTGTAAATCTATATCTGGATGGAAAAGAAAGCCAACAACGAATTGCCCATATGTTTGATGTAAGTCTCGCATCTGTCCAACAATGGATTCGAAACTATGAATCTATGGGAGCAAATGCATTTACATTGAAAGGGAATAAAAAATATTCCAAAGAATTGAAACAGCAAGCAGTCTTAGATTATTTAGCAGGCTATGGTTCTCAAGATGATATCTGCAAAAAATATGGAATCCGTTCAAAAGGTAAGTTACAATCTTGGATAAAGAAGTATAATGGTCATGAAGAATTAAAATCTTCTGGAACAGGAGGAAGCATTATCATGACCAAAGGAAGAAAAACTACTTTTGAAGAACGGGTTGAAATAGTACA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGAATCATAATGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 82181-81749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIPX010000005.1 Anaerostipes hadrus strain MSK.9.9 NODE_5_length_118489_cov_197.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 82180 32 100.0 36 ................................ CTGGTAATGCGTGGGAGTCATACCTACGACACAAAG 82112 32 100.0 34 ................................ TCTTCCGCAGTACCGCTTGTCCTCTAAATTTGTA 82046 32 100.0 34 ................................ AAGCACTCCTGCTTTCAAATCATCAAGAAGCTGT 81980 32 100.0 34 ................................ AGCAAGGCTCTTACTCTTGCAGAAGGTACAAACA 81914 32 100.0 35 ................................ GTTTCCCATCTTTAGTAGTAAGTTCTTTAAATACA 81847 32 100.0 35 ................................ TACGGAAAGTATGACGAAAAGAAGAAAAGCTTAAC 81780 32 71.9 0 ...G.......T...A..A..CAT...C..T. | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.0 35 GTCACTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : TATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAATGTTAGTATTAATTACCTATGATGTAAATACAGAAACAGCAGCAGGAAAAAAGAGACTGAGAAAAGTAGCAAAGCAATGCGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAATGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGATAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGTATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTTTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : ATATTTTACTTGGTGTGGGTTATATTAATATTTGCAAATTGTCATCAATATTGTAGTAACGATAGGCGGATATACATATAATGGAAGCTCAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCGATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGTGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGTAGTGATATTTATGAAGGCTGGATGAAAAATAAAAATTCAGCGATGATCAGTTGCAATGATGGTTTCAGACCGGTAAGTTTTTACATTGAAGTGTTAGATGAGAAAATATATTAACGAGGAGATATGAATCATGTCGACTAAATTTGTGATGATACAAGCAATAGGATTCTTAGGAACAATCACATTTTTCTT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //