Array 1 3518141-3516243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047881.1 Salmonella enterica subsp. enterica serovar Infantis strain 119944 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 3518140 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 3518079 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 3518018 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 3517957 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 3517895 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 3517834 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 3517773 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 3517712 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 3517651 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 3517590 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 3517529 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 3517468 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 3517407 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 3517346 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 3517285 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 3517224 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 3517163 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 3517102 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 3517041 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 3516980 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 3516922 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 3516861 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 3516800 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 3516739 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 3516678 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 3516617 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 3516556 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 3516495 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 3516394 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 3516333 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3516272 29 93.1 0 A...........T................ | A [3516245] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3536039-3534423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047881.1 Salmonella enterica subsp. enterica serovar Infantis strain 119944 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3536038 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 3535976 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 3535915 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 3535854 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 3535793 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 3535732 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 3535671 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 3535610 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 3535549 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 3535488 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 3535427 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 3535366 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 3535305 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 3535244 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 3535183 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 3535122 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 3535061 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 3535000 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 3534938 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 3534877 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 3534816 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 3534755 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 3534694 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 3534633 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 3534572 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 3534511 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 3534450 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //