Array 1 148904-153024 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBNQ01000033.1 Lampropedia cohaerens strain CT6 484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148904 29 100.0 33 ............................. CGAAACAGTTTTGGGAGCAACACCAGCAAATGC 148966 29 100.0 32 ............................. GTTTTGGGCGTAGCACTGTGGGCTGTTCGCGA 149027 29 100.0 32 ............................. TCCCCAGCACCAACCTCCGGCGAAACATGCGG 149088 29 100.0 32 ............................. CAGCAATGTCATACTGCAGTCGCTGCGCAACG 149149 29 100.0 32 ............................. CCCATCCGAATGTTGTGCTTTGTACAACACTA 149210 29 100.0 32 ............................. CTCATCGGCTGCCGGTTGCGAGACCCCTCGAT 149271 29 100.0 32 ............................. TCGCCGCGCATGGCAGCAGTGGGAGCGGGGCG 149332 29 100.0 32 ............................. TTTCGAGACGCCGTCTTCATACTTCTCAGGAT 149393 29 100.0 32 ............................. TGCCAATCGCGCGGGAGCTGATCCGCGAGGCC 149454 29 100.0 32 ............................. GGATTCAATCTCGACACTTGGAAACGCGTGCG 149515 29 100.0 32 ............................. CGCCTGGACAACGTGCCGGACGTGACCGCACT 149576 29 100.0 32 ............................. CGCGCCGACCGTGGGCCGGCGGAATATCAGTT 149637 29 100.0 32 ............................. TTTCATCCCCTCGGCCTGCGCGGCGCGCACGC 149698 29 100.0 32 ............................. GCGCAATTGCAGCAGCTGCAGCAGCAGGCGCA 149759 29 100.0 32 ............................. GTCTGCCATGGCTGCCTTGTCGGCGCCTGCCT 149820 29 100.0 32 ............................. GATGTTGGCATCATTGCGGGCCACGCCATAAA 149881 29 100.0 32 ............................. GCCACCGGCATCGAGCGCGACCCCGACACATT 149942 29 100.0 32 ............................. GAGTGGGCCTTTCTGGTGCAGAAAACCAAGGC 150003 29 100.0 32 ............................. TTGCGGTGGCAGTTGACGGCCACCGCCAGGGC 150064 29 100.0 33 ............................. GTTCCCGGCGCGTCGTGGACGGCCTCGGCGTAG 150126 29 100.0 32 ............................. GCGTGGTGGACCTTGCGAAGGTGATCTCAATC 150187 29 100.0 32 ............................. CACTTCATCGATACCGGCTAGGGCTGGAGCAG 150248 29 100.0 32 ............................. ACGACGCCGATGCGCTGCGACTGGCGGTCAAG 150309 29 100.0 32 ............................. CTGCTCTTGCAGGATCGCAACGTCTGCCTGCG 150370 29 100.0 32 ............................. GACCTCGATTGCATGTGTGCGTGGGCTTTTCT 150431 29 100.0 32 ............................. CGCGCTAACGACACCGAAGCCACTTTCAAGCA 150492 29 100.0 33 ............................. GAGGCGTACTGAATCGCCTAGGTGCAGTGCTGC 150554 29 100.0 32 ............................. TTGCGGTGGCAGTTGACGGCCACCGCCAGGGC 150615 29 100.0 32 ............................. ACTGGCGGGATGGTTGAGACATGGGAGACCGT 150676 29 100.0 32 ............................. GCATTTACCTCACGTTTGAAGGCGGCCAGGGC 150737 29 100.0 32 ............................. GTCACGTTCCCCGTCAAAGGGGAGCTGGCCGA 150798 29 100.0 32 ............................. GCGGGCTTCTGGATGGTCGCGCCGGGTGCTGC 150859 29 100.0 32 ............................. TTGCGCAAACACGCGCGCGGCCTGCGCAGGCG 150920 29 100.0 32 ............................. CCACCAGCGTCTGAACGCATCCAGCGCATCCC 150981 29 100.0 32 ............................. CACCCCCGCAGCACCGCCCCGGCCTATAGCCT 151042 29 100.0 32 ............................. GCATTTACCTCACTTTTGATGGCGGCCAGGGC 151103 29 100.0 32 ............................. CCATGCTAAACGCTCCCACTGTTAGCATCGCT 151164 29 100.0 32 ............................. TGTTCGGCGCAGGCTGGAGCGACAACATGACC 151225 29 100.0 32 ............................. CCTACGCCGAGGCGACTGACAAACTCACAGAG 151286 29 100.0 32 ............................. CCACCAGCGTCTGAACGCATCCAGCGCATCCC 151347 29 100.0 32 ............................. TGTTCGGCGCAGGCTGGAGCGACAACATGACC 151408 29 100.0 32 ............................. CCCAGGCGCTGCAGCAGCTGGAGACCAACGTC 151469 29 100.0 32 ............................. TTTGCGGCTGCTGTCCGGCACCTGCCTGATGA 151530 29 100.0 32 ............................. CACCATGCCAGTTTCCTGATGACGGCCAATGC 151591 29 100.0 32 ............................. TCGCACTCGCCGGTTATCAGGTCATTGCTCTT 151652 29 100.0 32 ............................. AACTCTTCGTCCATGCGCACGCCCCCGACCTC 151713 29 100.0 33 ............................. CGGATTCCACGCGGTGTGGACCAATGCCCCTTC 151775 29 100.0 32 ............................. GCACCGATAAATTCTCCTTCGTTTACCGGGAC 151836 29 100.0 32 ............................. CCATCGCATCCCGCAGTGTCATGCCGCCGTAA 151897 29 100.0 32 ............................. TCAATGTTGGCAATGCGACCTGCCAGCTTCAC 151958 29 100.0 32 ............................. TCCGCGTATTCGTCATCCGGTGGCTCAGCATC 152019 29 100.0 32 ............................. TCGGCACTGCCAACATACGGAGAACAGGTGGC 152080 29 100.0 32 ............................. AAGGCGAGATCTACCGCGAGCCGCAGGCAGCC 152141 29 100.0 32 ............................. AGCCAGAGCCCGAGCGCCCGGTCATGCCCACT 152202 29 96.6 32 ............................C TGCGCCTCCAGGTTGCTGATGGCCTCGTCGAT 152263 29 100.0 32 ............................. TCCGATCTTGGTGTTCCGCTGTTGTCATTGCC 152324 29 100.0 32 ............................. TAAGAATCTGCCACATGCCATGTACGGGTCTA 152385 29 100.0 32 ............................. CAACATTTCGTCGGGTTGCTCAATCCGGTACT 152446 29 100.0 32 ............................. TCCGCGTATTCGTCATCCGGTGGCTCAGCATC 152507 29 100.0 32 ............................. CGGTTCCTGCTTGGGCTGAACATCGGTAGGCA 152568 29 100.0 32 ............................. CCGACCGGATCATTGAATCTCAGACCGTGGAA 152629 29 100.0 32 ............................. CCATTGATTCCACTAGAGATTTCACTGTCGAC 152690 29 100.0 33 ............................. CCTGCCCGCAGTAGCTGTGCAGCTCAATGGCAC 152752 29 100.0 32 ............................. ACAGTAATCACAGCAGCACCTCCTGCGCGGCA 152813 29 100.0 32 ............................. TTGACAACTGTTATCGTGTGAGCCTCTCTATC 152874 29 100.0 32 ............................. AATGCACCGCCGATCAATGCGGCGCCCAGCAC 152935 29 100.0 32 ............................. GCCACTTCGATGGCGGCCGCTTCGTTGGGGTC 152996 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 68 29 100.0 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AAGAGATATTGGCCGCTGGAGAAATACAGCCGCCAGAAGCGCCGCCCGAGTCGGTACCGCCAGCGATACCGAATGCGGAAAGCATCGGTGACGCCGGACATCGCACGCAATAATAGGGTGAGGAGATGCACCGTGAGTTTTCTGGTTGTCGTCACCGAAAACGTGCCACTGCGCTTGCGTGGGCGCATGGCAATCTGGTTGCTGGAAGTGCGAGCAGGCGTGTACATCGGTGATGTCTCGCGTCGCACCCGGGAAATGATCTGGCAACAATTGCAGGAAGGCCATGAAGACGGTAACGTCGTCATGGCCTGGGCGAGCAGCCATGAGTCCGGCTACGAGTTTCAAACGCTAGGCAAGAACCGGCGGGTGCCCGTCGAGTTCGATGGGCTTCGATTGGTGGCTTTTCAGCCACTTGGAAATGAGCCTCTTTAACAACCTATCCATTCGGTAGAATCACGGACTCTCTGTTTTCATTGGTAAATCAATGACATACAGGAAGT # Right flank : GGAATTCACCCTGGAATGGGAAACCACCGACGCCACTGCAGATGATTCCATCGGCGCATTGCGCGAGAACCTGGCCACATTCCAGACTCTGAGCGTATCAGGGGACGGCACGCTCAAGGCAAGCGGCGCTGGAGCGGCAAACCTGATTGAGCTGACCAAGCACGTCGCCAATCCAATCGCAACGGGCGGACAGCCGGTCGTGTGGGTGCGCATGACGTTCCCAGACCTGACGTTCACGTTCTTTGCCATCCTCTCCAACCTGAGCCGCAGCGCGCCATTCGACGACGTAGTGACCTACTCGTTCGAGGCATCTGCCACCGCTTCGGACTACGGCTTGATCGTCGAGGACACCCCGTCCGTTGTCACACCAACGTCTGTGACCGTCACGCCCGCAACGGTGAGCATCACCGAAGGTGCCACGCAAGCCCTCACGGCGACCGTTGGCCCTGCTGGCGCACCGCAGGCGGTAACCTACACCAGCGCGAGTAATGCTGTTGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160040-165385 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBNQ01000033.1 Lampropedia cohaerens strain CT6 484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 160040 29 100.0 32 ............................. AAGGGCGCGACGGTCGAGGGCGTGCTGGAGGA 160101 29 100.0 32 ............................. CCTTCGCTCATCCTCACCACTCCCGCATAGCT 160162 29 100.0 32 ............................. ACGTGCGCTGCGGCCAGCGAGAGCCGGCGGGC 160223 29 100.0 32 ............................. TGCAGGGGAGCGGAGCGACACGATTGCAGCCC 160284 29 100.0 32 ............................. CCGGTATTGGTTGTTGAGCACCTTCAACCAGG 160345 29 100.0 32 ............................. CGCTGGGCTGACGCGCAGGAGGCAGCGTAATG 160406 29 100.0 32 ............................. GTAGCAACCCATGCTGACCTACACCGGCATCA 160467 29 100.0 32 ............................. ACTACCTGCGCCACAAGTTCGCGCGGTTCGAT 160528 29 100.0 32 ............................. GACGTGCTGGTCGAGCGCGCTGAAAACCTGCA 160589 29 100.0 32 ............................. GAGATGTCGATCAGCCAGCGCGAGCAGGTGCG 160650 29 100.0 32 ............................. GGCCGCAGCTGGCAGGCCCCGCGCCAGGCGTG 160711 29 100.0 32 ............................. CATCCAGCACCGCAATTGCAGCGGATGCGCTC 160772 29 100.0 33 ............................. AACCCAGCACATGAAAGGAACGCACCCATGTCC 160834 29 100.0 32 ............................. CCTATGGCGGCCGCCGCAAGGACAAGCGCATG 160895 29 100.0 32 ............................. CCTCCGTGCAGGTGCCAGAGCCAGATGCAGAG 160956 29 100.0 32 ............................. CCATATCGCAATGGCCTGATGTACTGCCGCCT 161017 29 100.0 32 ............................. CCCAGGCGCTGCAGCAGCTGGAGACCAACGTC 161078 29 100.0 32 ............................. CCTCCGTGCAGGTGCCAGAGCCAGATGCAGAG 161139 29 100.0 32 ............................. CTGGTGCGCCAATAGCGGGCACCGTGCCATCA 161200 29 100.0 32 ............................. TGATTGGCGCGAGCGCGTCCCAAACGGCTGCC 161261 29 100.0 32 ............................. CGTTCACGGTGATGCTTAGCCGCAATCCGCAG 161322 29 100.0 32 ............................. CGCCTCGATGTTGTTGTAGCTGGGAGCTGCGC 161383 29 100.0 32 ............................. TCATTGATTTTAAATGCATGTGCAGGGCGTGC 161444 29 100.0 32 ............................. CCTATGGCGGCCGCCGCAAGGACAAGCGCATG 161505 29 100.0 33 ............................. ACCAGACGCGAAGGCCAGCTGGAGAAGGAGTTC 161567 29 100.0 32 ............................. CGATGAATACCTGTTGCGGGACTACTACCCCG 161628 29 100.0 32 ............................. TTCAACCAACCGCGTGCCGGTGCGCGGCACTT 161689 29 100.0 32 ............................. ACCTTCTGCATTGATGCTCAACGGTGCCAGTA 161750 29 100.0 32 ............................. CCGGATCACGCCGCTTTCTGCCAGCGTTTCGA 161811 29 100.0 32 ............................. GCAACGCATGAATCCAGCGCGTCGTAGAGGTC 161872 29 100.0 32 ............................. AGCGCGTACACATCGGCTTCCACGGTGCGCGC 161933 29 100.0 32 ............................. TTTGCCGCTTCTTCCTCTCTGGACCATTGGTG 161994 29 100.0 32 ............................. GCAACGCATGAATCCAGCGCGTCGTAGAGGTC 162055 29 100.0 32 ............................. AGCGCGTACACATCGGCTTCCACGGTGCGCGC 162116 29 100.0 32 ............................. TTTGCCGCTTCTTCCTCTCTGGACCATTGGTG 162177 29 100.0 32 ............................. ACATCGGCGGCGGTCAGTTTTTTCCGGCGTTG 162238 29 100.0 32 ............................. ATCGACTTTGCACCGACGAACCGCCAAGAGGG 162299 29 100.0 32 ............................. GCCGGATGGTATCGGCTGTGGTACATCCCGCC 162360 29 100.0 32 ............................. GTAGTTCTCAGGCGCGCCGGTCACGACCTGAT 162421 29 100.0 32 ............................. CCACCGCTTGGGTGGCTGTGTTGCTGGCGCGC 162482 29 100.0 32 ............................. TACAGCGGCGAGACGCGCTACAGCGAGGGCGA 162543 29 100.0 33 ............................. CGCTCATTGCCAGGATCAAATCGGCTCACCGGG 162605 29 100.0 33 ............................. TACCGGACTCTCACCGTTTGCAGGTGGGCAAAT 162667 29 100.0 32 ............................. TCCGTGCTTCTGCGCGAGCTTGCGATGACCGC 162728 29 100.0 32 ............................. CGCTCGCCGGTAACCTCAATGCGGTCAACGCC 162789 29 100.0 32 ............................. TTTGCGCTGCATTTCGAGGGCCGGTATCAGCG 162850 29 100.0 32 ............................. GTCACGGCTGGATGGTTTAGGGCTTTGCCACA 162911 29 100.0 32 ............................. AGAGCGCGGCATAACTATCGATGAGTTGATGA 162972 29 100.0 32 ............................. AAACACCGCCCATCGAGACGCATCATCGTCAC 163033 29 100.0 32 ............................. GCCTTGATTACACCCTCCCGTCATACCGCGTA 163094 29 100.0 32 ............................. AGCTTTACCGACTCAAGGGATGGCCGTGGAAC 163155 29 100.0 32 ............................. GGGTTAGCGCTCATGTGCTAACCCCTTTTGTC 163216 29 100.0 32 ............................. GCATGCTTGTAGCTTTAGGCCGTGCTGCCAAA 163277 29 96.6 33 ............................A GTCGTGGCGCTGTTCGCCGCTGTCATGGACGCA 163339 29 100.0 32 ............................. CCGACCGCGATATTCCCAAGCTGCTGGCGCTG 163400 29 100.0 32 ............................. ATCGCAATATCTGCATCCCGGCCCCGCAGCTC 163461 29 100.0 32 ............................. AACCGAGTAAGCGCCTGGCCGGTGTCCATGAC 163522 29 100.0 32 ............................. TTCGCTCTGTAGTGGTAGGGCGCAAAAAAGCC 163583 29 100.0 32 ............................. CTGACACCACGCGAGGCCGAGGAAATGGACGC 163644 29 96.6 32 ............................A GAGGCAGTGGGAGCGTGAGAACCCTATTGCCA 163705 29 100.0 33 ............................. CGTATCAAGATGTCCATCTTCCCGGCAGACACC 163767 29 100.0 33 ............................. CACAGATCCAATGGCGCAAACTGACGCCCAAAA 163829 29 100.0 32 ............................. CCGCTTGGCAGAGCGGCTTGACGTTCATCCAG 163890 29 100.0 32 ............................. GACTGGCCTGCAGCGTTCGCAAATTCGGTCAA 163951 29 100.0 32 ............................. CCCCAGTCGATACCGAAGTACGGGCCATTCCA 164012 29 100.0 32 ............................. TAGACGTTTCCAGCTCTCGATATCCCACTTCC 164073 29 100.0 32 ............................. TCATCCTCCACAACCGCCAGCAGGCGAAGCAG 164134 29 100.0 32 ............................. CCAGGAGGCGCAGGACGAAGGCCGACGAGGAC 164195 29 100.0 32 ............................. ATGGAGGAGCAGACGTGGCACCCGTTTTACGA 164256 29 100.0 32 ............................. GCTGCTTCACCACGAACACCCTTGGAGGATGC 164317 29 100.0 32 ............................. CGCGTTGTGCAGGGCGTTGAGGTCTTCTCCAA 164378 29 100.0 32 ............................. GCGCGTGTCACGAGGGCGTGGAGCTCCTCGTG 164439 29 100.0 32 ............................. CGCACGCAGGAAATCGTTGATGCTCTGCCCAC 164500 29 100.0 33 ............................. CAGATGCAAAGCCTGCTGTCTGACCGGCTGGAC 164562 29 100.0 32 ............................. ACCGGAGCACGTATTGCATTGCCGCTGGCACT 164623 29 100.0 32 ............................. ATGGGGCACAGCCCCATCACAACCGGACCGGC 164684 29 100.0 32 ............................. CTCACCCGCCATGGCGTGGACGTGGCCGAATA 164745 29 100.0 32 ............................. CCGTAAAACCCGATCACAACCATGACACAGCT 164806 29 100.0 32 ............................. CATTGACGGGCATTGTGCAGGCTGAGCTGTTC 164867 29 100.0 32 ............................. TCGTGGTTTTTTGCACCTTGCGAAAATCCGCG 164928 29 100.0 32 ............................. GCCACAGGATTTTTTCCTGCGCGCTCTTGCGC 164989 29 93.1 34 ...........................GC CGAGCGCCGCACCGCCCGCCCGCGCACCGGCGGA 165052 29 100.0 32 ............................. CACGCCCAGGTGCGGTCGGCGTGGCCGCTGCT 165113 29 100.0 32 ............................. GCAGCCAAACCCGCTTCGGCGGGTTTTTTCAT 165174 29 100.0 32 ............................. CCCGGGCGTGAGCCGGTAATCAGCTGCGCGAA 165235 29 100.0 32 ............................. CGCGGGGACAGGTATGGGCCTGATGCCGTGTG 165296 29 100.0 32 ............................. CGCGCCAACAATCTGCCGCAGTGGATCGAGCA 165357 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 88 29 99.8 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GCAACCGTGGGCGGGCAACCGGCTGACGTGCTCGATGCTGCCGGGCGCCTGGTCATCACGCCGCACGCGCTGACGCTGGAGGGGCAGACCAACGTCCCCGCTGATCTGCTGCCGGGCGAGAGCCTGCACGCCTTCCTGCGCCGTCACGTTGACAGCATCGACTCTGGCGCATGGTCCGTCTACATCGGCGGCGTGCAGATTCCGCGCGAGATGTGGGTGCGGGTGTATCCCAAGCACGGCACGCTGATCGCCGTACGCGCCGTGGTGCAGCGGCAAGTGCTGCAGCTCGTTGCTATCGCGGCGTTGAGCTATTTCACGTTCGGAGCCGGGTCTATCGGATCATCGCTGATCGGGATCAATGGCGCGGCGGCGTTGGGCGCAACCGGCACTGCGCTGGCAGTTGGCGCGATCAACGGTGCGCTGTTCCTCGGCGGCGCCATGCTCATCAACAAGGTCCTTGGACCGAAGTTGCCAGGCCCTGCCGGTGCCGCTGAGCAAGA # Right flank : GGTACGCAAGCGTGGCCGTGAGCGTTACCTGCCATTGCTGGCAGAGGCCCTGCAAGACCCTGACGAAATCTGGGTACGCATTGAATGGATTGAATCCGCCGCGCGTGCAGAAGTGCGCAGGCGCTATGTGGCGCGTTACATCATTGATGGGGAAGATGCGCCGGTGTTGCTGGTGTTTGAGCGTGGCCCCAGCGGCTGGGTGGGTGTGACCGCCTTCAGGGCAGCTGATCAGTCGCCGGATAGCTGGCGCGTGGGCGTGCGCCTGTACCGCAGAGCAAGCGAAGAGTAGACAAACGAAGACCCCGCACGGCGCCACATGCGGGGTCATTCCGGGTGTAGGGTCGGTGGACCTGGCGCGGCCTTCTCACCCGATGAACTGTGGCAATTTTGACATCGCAAAGGGCAAACCGCAATGGCAGGCAGCAACATCCAGCTCAAGGCCGGCATCGTCATCGACGACCGCGAGGCGCGCGAGGCCCTGCAGCGCCTGGCCATTGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34246-25396 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBNQ01000013.1 Lampropedia cohaerens strain CT6 464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34245 28 100.0 32 ............................ ACCAGGGGCGTTAAAGTGGTAGCAACCGCTTC 34185 28 100.0 32 ............................ AATCAGAATTCGGCTCAAACTCGGCCACCCGG 34125 28 100.0 32 ............................ TCATCCGGCATGCCGTGCGCCGCGACCATGCC 34065 28 100.0 32 ............................ TGCATTCTTCATCCAGATACCAACATCCCACT 34005 28 100.0 32 ............................ AGATCCAGAAACAAACCAATCAGAAGGACAAT 33945 28 100.0 32 ............................ ATGTGGTCGCATTCGTACCGCGAGATGATGCG 33885 28 100.0 32 ............................ TAGAGATGGTCGAGGAAGCGCAAAAATTGCTT 33825 28 100.0 32 ............................ TTGTAGCTGTAAGTCCTGGCCTCATGCAGGAA 33765 28 100.0 32 ............................ GGATGGGGAACTAAACGGAGTATCCAGATAGC 33705 28 100.0 32 ............................ ACGCGCAGGGCGTTGGCCCGCGCTTTATTGCG 33645 28 100.0 32 ............................ GATATAGAGTTTCCGAGTCTCTCCGAATTGAT 33585 28 100.0 32 ............................ TACAAATACTGGCCGAAAACAGACCGCCTGGA 33525 28 100.0 32 ............................ ATCGATTCGAGGTAGAACGACATCTGCTGCTG 33465 28 100.0 32 ............................ ATCACCGGGAGCGCAAACGATGAGTAATGCAA 33405 28 100.0 32 ............................ ATCTGTTTCTCTGACCAGCTCGACCGTCGATA 33345 28 100.0 32 ............................ ATGTGATGGCCTGGCCATCGGCGGGGGTGATG 33285 28 100.0 32 ............................ TGTCAGACATTTTTGCTGCCATATCATCGCCA 33225 28 100.0 32 ............................ AATACCTGCAAACCCTGGAAGACCAAATCCTG 33165 28 100.0 32 ............................ TACGGAGATGGCATGACCAAGCGCCTATCCCC 33105 28 100.0 32 ............................ GCGATCGAGGCGCACGGAAAATCGTTTGATGA 33045 28 100.0 32 ............................ TCTGCAGTCAAGCCGATCTGAGGCGCAACTTG 32985 28 100.0 32 ............................ TGCGAGCGGGGCGCGTGGAACGCGGATCTATC 32925 28 100.0 32 ............................ AGCTGGAGATGCAGGCGCTGATGACCAACATC 32865 28 100.0 32 ............................ TGACACGGGAAGCGGAACTTCAGATTTTGCAA 32805 28 100.0 32 ............................ TCAAGCCCGGAACGTTGACTAAAGCGCACGCA 32745 28 100.0 32 ............................ GTGTCCACGTTCCACCCACCGCACAAGAGCCC 32685 28 100.0 32 ............................ CCAGGGCCGACATGGATGCCGTCACCCCCACT 32625 28 100.0 32 ............................ TTTTTCTGCTGATTGCGCTGGTAGTACATGCC 32565 28 100.0 32 ............................ GATGCCGTTCAGCACCAATTCGCACCAAAAGA 32505 28 100.0 32 ............................ TGACCGCACTGCGGCCATGGCCCGCGCATTCG 32445 28 100.0 33 ............................ CCGGCGGTTTACGGATGTGGTGCACCAGATGGA 32384 28 100.0 32 ............................ AAGACCAAGCGCAAACTACCCGGCTTGCTCTG 32324 28 100.0 32 ............................ GCTGCCGATCGTGCACAAAGGCCCGCCAGATC 32264 28 100.0 32 ............................ GCATCGATGCGCAGCCTTCGACTAATGCCATC 32204 28 100.0 32 ............................ GATCCTGATACCGGCGCAGAGTACAAGCGCAC 32144 28 100.0 32 ............................ ATGTTGGAAGGGGCCGACACGCGCTGGACGTT 32084 28 100.0 32 ............................ TTCAGGGATGCTGACGTAGCCACGTTGCTTGT 32024 28 100.0 32 ............................ TCATAGCTGGCGGCCTGCTGCTGATTATCTAT 31964 28 100.0 32 ............................ TATGGCAAGGCCATTGATGCAATGAGCAAAAC 31904 28 100.0 32 ............................ TATCAAGACCAAGCCACGGCTTGCCGTCGAAA 31844 28 100.0 32 ............................ ATGCGACGTGGCGCCCACCATGCCGGACAAGC 31784 28 100.0 32 ............................ GTTTTGCTCGTCGTAGGTCAGGTCGTCGCCGA 31724 28 100.0 32 ............................ TGGCCCTGTTCCTCGGCGGCTGCGGCGGCGTC 31664 28 100.0 32 ............................ TCGTCGGAGCGTTCCTCGCGCAGGGTGAGGCT 31604 28 100.0 32 ............................ TTGGCGGCCTTCGGTATCTGGCGCGACCATCG 31544 28 100.0 32 ............................ TTTAGAGGGTGATTTGCCAGTTGATGGCCTGG 31484 28 100.0 32 ............................ AGCAGCTCAACGATTAGCGCGGCTCGCTCATT 31424 28 100.0 32 ............................ TGATCGGCGGTGCCGTCAGCGTGCAGGATGCC 31364 28 100.0 32 ............................ TAACGGCAGCTGCCAATGCCACAGTCCCTCCT 31304 28 100.0 32 ............................ AGTCTGCGGTGGCCATGATGCCGTCGCCCAGG 31244 28 100.0 32 ............................ ATGGTCACCTCCTCCCGCGCGGCGCTCAACGA 31184 28 100.0 32 ............................ CTGACGCGCGCCCCATCGCAGCAGATGAGGCC 31124 28 100.0 32 ............................ TCGCCCAGCGCCTCGCGGATGACGTAGCCCGT 31064 28 100.0 32 ............................ ACCGCCGCCGATCAAGAACAGATTGAACAGGT 31004 28 100.0 32 ............................ ATTTGGGGCCGCTCGCAAGTGCGGAGATGTTT 30944 28 100.0 32 ............................ GTTGATGTTGGTGTAGATCGTGCGCTTGTACT 30884 28 100.0 32 ............................ AAGACCAAGCGCAAACTACCCGGCTTGCTCTG 30824 28 100.0 32 ............................ ATCATCACCGGCTCGCCTGGCGCGGGCAAAAC 30764 28 100.0 32 ............................ AGCAGGAGCAGCCATTAATCCCTTTGCGACTC 30704 28 100.0 32 ............................ ACGAATAGACGCAGGACCGCCACAAAACGGGC 30644 28 100.0 32 ............................ TGCGTCTATTCGTGGTGACTTTGGTTTGCAGA 30584 28 100.0 32 ............................ TGCCGCACCGCGCGTGCGATGGCCTGCGGGTC 30524 28 100.0 32 ............................ ACGTTTTGTTTTTTTCGGTGTGGGCCTTGCCG 30464 28 100.0 32 ............................ AGCATCACATTGACCCCACGCCCACCGATGCA 30404 28 100.0 32 ............................ GCTGGAAACGATTGAGGATGCAGCCACGTGGC 30344 28 100.0 32 ............................ ATACCGGACTGCCTGCTTATTTGCGACAAGCA 30284 28 100.0 32 ............................ AACGTCGATCAGTACGTCCAGGCCGCAGCGGC 30224 28 100.0 32 ............................ TGCGCACCCATGTAGTACACGTCGCTCGGCGT 30164 28 100.0 32 ............................ TTGGCCCGGCTCAGTTTCGTCCACACGCGGCG 30104 28 100.0 32 ............................ ATCAGAGGAATCGCGTCGGAAAATGTCAGAAT 30044 28 100.0 32 ............................ GTTGGCTGTGATGATGAATGTTCCGCCGTGGC 29984 28 100.0 32 ............................ TTGGGATAGGGCGGCGCGGGCGCGGCCACCGT 29924 28 100.0 32 ............................ GCAGCAGCACGATGCTCACGCCGCTCATCCGG 29864 28 100.0 32 ............................ TCCAACGCATCCAGTCGGGCCTGCACCGCAGC 29804 28 100.0 32 ............................ TGGTTGGTGCTGCTTGGATGGCGGCAAAGAGT 29744 28 100.0 32 ............................ TCCACCGTCCCGAGGTTGACAGGTATCGGTGG 29684 28 100.0 32 ............................ TTCTCACTGGCCGTCTTGATCGACTGTACCGG 29624 28 100.0 32 ............................ GTGACCGAGCAACTGCGCGCGCGGGGATTCCG 29564 28 100.0 32 ............................ ACGATCATGTTGTACTCCATGAGCATGAAATC 29504 28 100.0 32 ............................ TCGATGCGGACAGTGCGCTTGGCCTTCTGGCA 29444 28 100.0 32 ............................ TTCAACGACTGCAAACAACACTTCTGGCCGCC 29384 28 100.0 32 ............................ ATTCATCCCGAGACGCTGCGCGCACGTCTGCG 29324 28 100.0 32 ............................ TGCTGGCCGCGCAGCGTGAATTCCCCGATGTT 29264 28 100.0 32 ............................ TTCGACTAATGCCATCATGACCGCGTCGGGTA 29204 28 100.0 32 ............................ TCCAGGCATGCGCACGCGACCCTGCTCTAGCA 29144 28 100.0 32 ............................ ATCGGGCACGACCAGTTGATTGGCCGGGCGAT 29084 28 100.0 32 ............................ TGCACCGGGCCAGCAGCGGTCATCTGCGCAAT 29024 28 100.0 32 ............................ CTTGTTGGTGTGTGCGCGGCGGTTCCATCGTT 28964 28 100.0 32 ............................ TGCAACGATCAGGAGGGTTTGACGCTACGCCC 28904 28 100.0 32 ............................ ACGCTAGGGGATGTGCCAAAAAACAGCGTCTG 28844 28 100.0 32 ............................ ACTGGGCGGGCTCCTCTGAGAGCACGTCGTCC 28784 28 100.0 32 ............................ ACGGGCGAAACCCACGCCAGGCCACGTGCCCA 28724 28 100.0 32 ............................ GCATGCGCGAGATCGCGGCGCAGCGCTGCAAT 28664 28 100.0 32 ............................ TGCAGCGCATCGGACTGGCGGCGCAGCTCTGC 28604 28 100.0 32 ............................ ATGCCGAAGAATAGCCGTCAAGGCCACCTAGA 28544 28 100.0 32 ............................ TGCGATCACGCGGAGACCTGCCAGGATGCGCC 28484 28 100.0 32 ............................ TGGCTGACCTTAGGGTCATTGCAGGCGAGGAT 28424 28 100.0 33 ............................ CGATGAATCGATTGCAGCAGTTGCAGTGGCATC 28363 28 100.0 32 ............................ ACTTCCTGCAATTACTCAGCGCCGTGCGCAAC 28303 28 100.0 32 ............................ ATCAACAGGCGTTTCGATCAGATCGGCGTACA 28243 28 100.0 32 ............................ AGCAGGCTGTAGACCAGATCCATTGGATTGTC 28183 28 100.0 32 ............................ TAATCTTCAGCTTCGACGAATTCACCGTATTC 28123 28 100.0 32 ............................ CACACCCTTGGTCAAGTTAATGGTGTGGATGT 28063 28 100.0 32 ............................ TTCACTCTGTCATGATGATCGTTTGATTGCCT 28003 28 100.0 32 ............................ GGGCTGATACTCGATTGAAACAGTCTCAATTG 27943 28 100.0 32 ............................ AATCCTGCTTGCGCCGCTCGCCTTCTCCTGAA 27883 28 100.0 32 ............................ CGTAAGGAATGGGGCCATGAGCAGTCAGTACA 27823 28 100.0 32 ............................ AAGCCACGGCTTGCCGTCGAAACCGTCAAAGC 27763 28 100.0 32 ............................ AGCGCAAGGTGGCATTGCTACTTGACGTAGAT 27703 28 100.0 32 ............................ GGCATGGAACGCCGCAGATCATGATTTGCACT 27643 28 100.0 32 ............................ ACTTTCATCGACATACACAATGTAGCGGCAAT 27583 28 100.0 32 ............................ TTGGACGAATCATGACCGAGCCGCGGACAAAG 27523 28 100.0 32 ............................ ACTGCGCGGCAGATTTCTCCGATCTTTTCGTG 27463 28 100.0 32 ............................ CTATCCCAAGGAGAGAAGTCATGACAGCGCAG 27403 28 100.0 32 ............................ TCCACCTGGCGGTCGTAGAACGGGTCATCAGC 27343 28 100.0 32 ............................ AGTAGAGGGCTTCGAGATAAGGGTTCGGATTG 27283 28 100.0 32 ............................ GCCAGTAGACGAACCCTGGCAACGCCTGTTGC 27223 28 100.0 32 ............................ GTATCGACACCTCATCGCCGACCAGCGCGGAG 27163 28 100.0 32 ............................ ATTAAAAAACCGCCTCGCGGGCGGTTGTCCTG 27103 28 100.0 32 ............................ TCAGATGCCGGGGGCAAATTTACTCAGGACCC 27043 28 100.0 32 ............................ ATCGCGAGCCTCCGCCACGTCGCGGATGAGAT 26983 28 100.0 32 ............................ TTCTCGGGAGGGCATGGGGGGGATTGTGGCAG 26923 28 100.0 32 ............................ TGGGCGCGTGGTGGTCGGGTTCGACTTCTGGT 26863 28 100.0 32 ............................ AAGCGGCGGGCAAGCCCGCCGAAGTCAGGCCT 26803 28 96.4 32 ....T....................... TGCAAGAGCGCGACGTGGTGGATGACCGCATG 26743 28 100.0 32 ............................ TGTATCTCGGTTATCGGTGCGGGCCGGGCGTT 26683 28 100.0 32 ............................ CGAGCGGATGCGATATTGGCCGCGCCGCCAGC 26623 28 100.0 32 ............................ ACTGGAAGAAGGCGACAGGATCATCGGCAGAG 26563 28 100.0 32 ............................ ATGCCCAGGTTCGTCAGCAGGATCAGCGGCCT 26503 28 100.0 32 ............................ AGTGTGCCAGCATGGGGCGGAAATCTGATCGC 26443 28 100.0 32 ............................ GAGTCGATACTTCTTGAATGTCGCCTCTTGTT 26383 28 100.0 32 ............................ TCGCGGGCCTCTGCGCGTGGTGCTCCGCCATC 26323 28 100.0 32 ............................ CTCGCCGTTCGCCTTCTCCACGCGCTCGGTCA 26263 28 100.0 32 ............................ ATGCGGTCCTGAAGAGTGCTCATGTAAGAAAG 26203 28 100.0 32 ............................ CATGGCCGTCCGGGTGGCCGTGCCGATCAGCT 26143 28 100.0 32 ............................ GTATGGGGTCGTGATCTCCTTGAGCATTCCAG 26083 28 100.0 32 ............................ TCGGCAAACATCATTGCCCGAACAGCCGTCAT 26023 28 100.0 32 ............................ GCATCGAGCCGGAACATGTAGCGCCGCTCGCT 25963 28 100.0 32 ............................ ATCTGATCGAGCATCGTGCGCAACATAGCCGC 25903 28 100.0 32 ............................ GTTTTGTTCCACGCCTGGGCGCGCATGATGCT 25843 28 100.0 32 ............................ CACGGCCAGTAATCCGGCGTGGGCTCTTCCGA 25783 28 100.0 32 ............................ ACTACCAGATCAAATACGCTGGCTTGACCTAC 25723 28 100.0 32 ............................ ATGTGCAGGCCGCTTTCTATGAGGATGTCTGG 25663 28 100.0 32 ............................ TACCGAAAGGGTGAAGCCGTGCCGCAGGATCA 25603 28 100.0 32 ............................ ATCAGAGCAAGGGGGAAGCAATGAGCCTGCGC 25543 28 100.0 32 ............................ CGTCAGCGAAACCCTGTATCGCCTCCTTCAGT 25483 28 100.0 32 ............................ TCTAATGGGGCGCGGTTTTTGGCAAACAGTTC 25423 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 148 28 100.0 32 GTGACCTGCCGCACAGGCAGCTCAGAAA # Left flank : TGCACTGGATGCATTGATGGGCAGCAACTGGCTCGCCGGCATGCGCGATCACGTGCGCCTCAGCCCCATGCAAGCCGCTCCCGCCGATGCCAAGCACTGCACCGTACAGCGCCGCCAGTTCAAAACCAGCGCAGAGCGCCTGCGCCGCCGCCGCATCAAACGCAAGGGCGAAACCGCCGACCAGGCCGCCGCAGCCATACCGGATGACATCGAACGCAAGCCCGATTTGCCGTTCGTGCACATTCGCAGCAGCAGCACCGGTCAGTCATTCCAACTCTTTGTGAAAGTCAGCGCGCCAACATCTCAAGCCGTTGGCGGCACCTTCAACACGTACGGACTCAGCGCCACCGCTACCGTGCCGTGGTTTTGACCCTTTTTCCTGATGCCATCTGAGCATCCAGCAAAATCAAGCACTTAGCAAACACCCAAGTATTTGGGTGCTTTGCCTGGTCATTGGACTTGTTCTTTAAAAATCAATGGATTGAGCGACTTACAATCTA # Right flank : GTCGTCTCCGTCCGCATCGGTGTCGTCTCCACGCTCATTGCAGCATTGGCTGCGTTGGCTTCTCCCGCTTTTTTCTGTGCGCTCCTAGAATGCGCACTTTCCATGAATCGAGCTGAGCCTTGCATCCCTCCTCCACTGCCATGACTGCCAACGAGCGCCGCGCCAGCGGGGCGCTGGCGTCGATCTATGCGTTGCGAATGCTGGGCCTGTTCCTGGTGTTGCCGGTATTCACGCTGGCTGCTGCGGACTATCGCGGCGGCGATGACGCCCGGCTTATCGGACTGGCGATGGGCATTTATGGGTTGACGCAGGCTGCCTTGCAGTGGCCGATGGGACTGGCGTCTGACCGGTTCGGGCGCAAGCGTGTGATCGTGTTTGGCATGCTGGTGTTCGCCACCGGCAGCGTGATGGCGGCGTTGGCCGATTCGGTCTGGGGCCTAGTCATCGGTCGGGCCTTCCAGGGCGCCGGAGCGGTTTCGGCGGCCGTGACGGCGCTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //