Array 1 29518-31328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIOE010000003.1 Dorea formicigenerans strain MSK.23.29 NODE_3_length_187916_cov_305.162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29518 32 100.0 34 ................................ TATTAAACGCTACAGAGAAAGAAAAAGCGCTATT 29584 32 100.0 35 ................................ AACACATTATATTGTAGCAATGTTACGCGAATATT 29651 32 100.0 33 ................................ AAATGAATATGAACTGGCAGACAGAAACGGGAA 29716 32 100.0 36 ................................ AGAGAATTAAGCGAGTAAAAAAACCCACTCAAGCAT 29784 32 100.0 33 ................................ GACAGTGAAGAAAAAGGAACGCAAGGAGTAGCA 29849 32 100.0 35 ................................ TAACATATTGCAAAAAATGGGTATATTTGAAAATT 29916 32 100.0 33 ................................ GATTATTTTGTAACGTACAATATGTTTCACGTG 29981 32 100.0 33 ................................ AACGTGCGCGACCAGTTCAAGGACATGACAGAC 30046 32 100.0 33 ................................ AAATTGCTGTTGACGGCATTGCTGGAAGAAACA 30111 32 100.0 34 ................................ TACCCAATTCGCGTATTTACAACAGACGCAGTAG 30177 32 100.0 34 ................................ AGAATAGTGGGATATCTAACGAATGGGTATTTTG 30243 32 100.0 33 ................................ CCTGTGTTTTGTCAATGATTCTTTGCACAGATA 30308 32 100.0 33 ................................ TATGAAAATATGTGTAACAGGTCACAGACCAAA 30373 32 100.0 34 ................................ GAGGAAGTAAATATGGTAGACCAGGATCACTTGT 30439 32 100.0 33 ................................ ATTGCAAGTTAAAGCATAATATCTAAGATTGTC 30504 32 100.0 35 ................................ TTTCTGGAATAACAACAATATGGTGCTTTGTCAAT 30571 32 100.0 35 ................................ ACTAGCTCCACCTCCTACTTCTGCAAGGGATACGA 30638 32 96.9 33 ...........T.................... ATTGATTCCAAAATCAACAAACTCAGAACAATT 30703 32 100.0 34 ................................ GCATAGTGATAGATTTCCAGCTTTTTACCTAAAC 30769 32 96.9 35 ....................A........... CTGTGTCTGTCCTGCTGTGTAAGTTCCTGCTGTAA 30836 32 100.0 33 ................................ TTCATACAATTTCGTGCCAGTTCCATTCCCACC 30901 32 100.0 33 ................................ ATAGGTTTGCCTTTTTCGTAGACTGTGCAATTA 30966 32 100.0 34 ................................ AGATACACAAGAAAAAGTAAATCAAAAACAACAA 31032 32 100.0 35 ................................ GGAGACATGATAATTGTGATTGCATTGTTGAGTAT 31099 32 100.0 33 ................................ TTTGGATAAAGAATCTATGTACATAGGCATAAA 31164 32 96.9 35 ......T......................... ACGTCTGTCAATGAGCAGGTGGGAACCATAGCCGG 31231 32 96.9 33 .......T........................ TTGCTTATCACTGGCTTTTCGATGTACTCTGAT 31296 32 93.8 0 .......................A......G. | T [31321] ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.3 34 GTCGCTCCCTTCGTGGGAGCGTGGATTGAAAT # Left flank : CAGTATTTCTTTGGAAATGAGGTAAACGAATATGCTTGTACTTATTACATATGATGTTAATACAGAAACTGCATCAGGAAAAAAGCGGTTAAGAAAAGTGGCAAAACAATGCGAAAACTATGGAAGACGTGTTCAAAATTCGGTGTTTGAGTGTATTTTAGACCAAGCACAAAGCGTTATGTTAAAACAAATCTTAAGCGATATTATTGATGAAAATGTAGACAGTTTGCGTTTTTATTATTTAGGCAATAAATATCAGACAAAAGTAGAACATGTTGGAGTTGAACGTGGAATCGCAGTAGAACAGCCACTGATTCTATAAATCACAGGTGCGAATATAAAGCTTACATAAATTTATAAGGTGATTCGCACCAAAAAAATAATTTAAAATTCTAGCTTTAATTCTATTAATATATTTTTTGTTAATATTTAAAGAATTAATTCTAGTAGTATTTGTCGATATTTTACAATATAAATTTATTATTTTGTGAAATATTGCT # Right flank : TATTATTAATAAAGAAAATGTGTTTTTGAATTGAATAACAGATTTGTAGGAGAGAGCCGGTACTTGATTCAAGAGTAAAGATAGAGCCTAATTTGAATTATACAGGTACTATGACTTTTGGTATTGGATTAACACAATAATAATGTTCGCGGACTAAGCAGCACTATTAATAAGTGTAGTATTGAATTGTATAAATGAAATGTTAGACTACAAATAAATAATTTTTTAGTATTTCAGAGAACAGAGGTTTTTAGTATGAGAACGCGAGAAGAAGTTTTGCAGTATGCGCGATCTTTCCCGAATGTGTATGAAGAAAGACCATTTCGTGATCAGAGCTGGCAGCTGGTAAGAGTAAAAGGAAGTAAGAAAACATTTTTATGGATTTACGAAAGAAATGGATACATCAATTTAAATGTTAAAGTTGAACCACAGTGGAGAGATTTCTGGCGCAGTACTTATGCCTCTGTTATTGCAGGGTATCATCAGAATAAGGAACATTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //