Array 1 228522-224485 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQG01000001.1 Serratia marcescens strain 1056 NODE_1_length_392828_cov_32.3807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 228521 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 228461 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 228401 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 228341 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 228281 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 228221 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 228161 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 228101 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 228041 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 227981 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 227921 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 227861 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 227801 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 227741 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 227681 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 227621 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 227561 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 227501 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 227441 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 227381 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 227321 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 227261 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 227201 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 227141 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 227080 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 227020 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 226960 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 226900 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 226840 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 226780 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 226719 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 226659 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 226599 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [226553] 226552 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [226543] 226491 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 226431 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 226371 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 226311 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 226251 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 226191 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 226131 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 226071 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 226011 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 225951 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 225891 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 225831 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 225771 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 225711 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 225651 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 225591 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 225531 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 225471 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 225411 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 225351 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 225291 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 225231 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 225171 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 225111 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 225051 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 224991 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 224931 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 224871 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 224811 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 224751 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 224691 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 224631 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 224571 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 224511 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 239745-237371 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQG01000001.1 Serratia marcescens strain 1056 NODE_1_length_392828_cov_32.3807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239744 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 239684 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 239624 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 239564 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 239504 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 239444 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 239384 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 239324 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 239264 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 239204 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 239144 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 239083 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 239023 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 238963 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 238903 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 238843 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 238783 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 238723 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 238663 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 238603 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 238543 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 238482 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 238422 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 238362 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 238302 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 238242 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 238182 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 238122 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 238062 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 238002 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 237942 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 237882 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 237821 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 237761 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 237701 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 237641 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 237581 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 237521 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 237461 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 237401 28 96.4 0 ....................A....... | G,A,A [237374,237378,237380] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //