Array 1 75934-76921 **** Predicted by CRISPRDetect 2.4 *** >NZ_AULB01000038.1 Actinomadura rifamycini DSM 43936 H505DRAFT_scaffold00035.35_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 75934 28 100.0 33 ............................ TGGACACGCCGGCAGACCCCGCGCGCCGCCGTG 75995 28 100.0 33 ............................ GCGTCGGACGTCGTCGGCATCATCGCCGTCGTC 76056 28 100.0 33 ............................ GTCCTCGGTCTCGTCCGCGGCCTGCGGGGCGCT 76117 28 100.0 34 ............................ AGCGGCTGGTGCAGGTGCGGCCGGGGCACACGCG 76179 28 100.0 33 ............................ CGGTTCGGGGAACATCGCGACCCACGCGCCGTC 76240 28 100.0 15 ............................ CTGTNNNNNNNNNNC Deletion [76283] 76283 28 100.0 33 ............................ CTGTCGACGTATGCGGAGATGGCCGCCCGGACG 76344 28 100.0 33 ............................ CTCACCTGGCAGCACGACGAAGGACGTACGGCC 76405 28 100.0 33 ............................ CAGCACTTCGACGACTTCACCCCCGACGCCTGG 76466 28 100.0 33 ............................ CGACCAGCCCGCGCTCGTCCTGACGGTGGGCAA 76527 28 100.0 33 ............................ GACGCCGCCATGGTCGAGCAGCTGCTCGCGCCG 76588 28 100.0 34 ............................ ACGGCCGGAGCGCACCGGGCGCGGCGGGCGGCCT 76650 28 100.0 33 ............................ CTGCTGGTGCGGCCGCGCCGAGGACCACCGCCA 76711 28 100.0 33 ............................ CCAGCCGCGCCCCGACACGGGCCGCGCGGAGCC 76772 28 100.0 33 ............................ GATCTGGCGGACGCTGCGGCCGTCCGGCGAGGA 76833 28 100.0 33 ............................ CGCCGCCGAGAGCCTCGCCAACGTCTACAGGGT 76894 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 17 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGGTTC # Left flank : CCGCATTAGCAGTGTCCTAATTCGGGTGGTTCAAGATCCAACCCTGTGGTCCATAATCCCATATCCCCAGGTCGGAAGGTAAGTGCATGCATGGGGGTCCGGTCGGGTCCTAGCCGGTCCGGCCCCCCGTCGGCCCCCCTCATGGCCCCCACAACGCTAGCTTCAACGTCGAGCGCGTGAGCTGGTCGTCTTCGTTGGCGACGACAAGCCCACGGACCACGAATGCTCCGTCAACTCGGGCCCCGGCGGAGCCGCCGCCCGCCCCCGCCGTCACCGCTTTATCGGTCTCATTGCGGGCCTCGTCCGCGAACCGGAACCATCCCTTAGCTTGTCCGCTGCGCGAAGAAGAGCGAGATCGACCAGCCTGTATCGGCTGGGTATGTTAGTCATCCTTTGCCGCTAACGACCCGGGCGGCTTCGTGATCAGACAGTGATTAGGTTGCGAAATCCAACTAAATGAAAACCGGCCATGCTCTTGGTAGAGTCCCAGGTCAGGAAGT # Right flank : CTGGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2415-5125 **** Predicted by CRISPRDetect 2.4 *** >NZ_AULB01000046.1 Actinomadura rifamycini DSM 43936 H505DRAFT_scaffold00043.43_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2415 28 100.0 33 ............................ GGGCGGGTGGATCGACAACGACCCGACGGCCGC 2476 28 100.0 33 ............................ GGACTAGGACCCGACCGCGCCCGACCGGGCGCC 2537 28 100.0 33 ............................ CGGTCGCCACCACGAGTCCCTCGGAGCGCAACG 2598 28 100.0 33 ............................ GACCGGCCCCGGACCGTGTGAACGGTCCGGGGC 2659 28 100.0 33 ............................ GAACCCGCCCCCCCGACCCCCACGGCGACCGGC 2720 28 100.0 33 ............................ CCGAGGTCGTCTCCACGCCGACCTTGCGGGCCG 2781 28 100.0 33 ............................ TCGCAGGTCAACGGCGCGCCGTGTCCGCCCGTG 2842 28 100.0 33 ............................ CCGAGGTCGTCTCCACGCCGACCTTGCGGGCCG 2903 28 100.0 33 ............................ TCGCAGGTCAACGGCGCGCCGTGTCCGCCCGTG 2964 28 100.0 33 ............................ CGGGCAGGCGACCGGGTTCAACACCCAGAAGGG 3025 28 100.0 33 ............................ CGGCGACACCTCCCCATGACCGGTCGCCTGCCA 3086 28 100.0 33 ............................ GCCCGTCCGCTGGCGCGTCGCGTCCCGCCCGAC 3147 28 100.0 33 ............................ GAGGGCGTCCAGTGCAGGGCGACGCCGGCGCCC 3208 28 100.0 33 ............................ GTGGGCCATCACCGCCGCCGGCCGACCCGGCGC 3269 28 100.0 33 ............................ CCCGCGCAGCACCGGCGTGATCGCCGGACGGAG 3330 28 100.0 33 ............................ GTTCGCCACCGAGGTCGACGCGCTCATGACCGT 3391 28 100.0 33 ............................ GCCGTCCAGGCCGCGCTGGAGCACCTCGATGCC 3452 28 100.0 33 ............................ CTGCTCTTTCAGCCCGGACAGGGTGTCCGACCA 3513 28 100.0 33 ............................ CCAGTGGGTCAAGCAGCCGCAGACGATGCTGAT 3574 28 100.0 33 ............................ TCTCGAGATGTCCGGGCCGGGGTTCCTGGACTC 3635 28 100.0 33 ............................ CACCACCGACGCCGGCACGTCCGGCGGCTACTC 3696 28 100.0 33 ............................ CGCGACCCGGTCGTCGGACGCGGGCAGCGGCTC 3757 28 100.0 33 ............................ CACCACCGACGCCGGCACGTCCGGCGGCTACTC 3818 28 100.0 33 ............................ CGCGACCCGGTCGTCGGACGCGGGCAGCGGCTC 3879 28 100.0 33 ............................ CTGACCCTCACGGGCAACGTCGAAGGTCTGTTC 3940 28 100.0 33 ............................ GGCCGGGTCCGAGGCCGCGGCGAAGGGCATCAA 4001 28 100.0 33 ............................ CGCGGCGGTCGCGGCGGCGGCCGCGGGGATGGC 4062 28 100.0 32 ............................ CCCAACTGGCCCGCCACCCGCCTCGAGCTGGC 4122 28 100.0 33 ............................ CTCCACGTCCCCATCGCGTCCGACGTCGCCACC 4183 28 100.0 33 ............................ GATCGTGGCCATGGCCGAGGAGGCCGGGGCGAA 4244 28 100.0 33 ............................ CAGGCCCCGGCCGGCGCACGAGGCCGGCCCGGA 4305 28 100.0 33 ............................ GTTGGAGCGGCGGTTCTCCCACGCGGACGTGTG 4366 28 100.0 33 ............................ TGCGCATGGACTGGTCCTGTCTTCTCTGGCGTG 4427 28 100.0 33 ............................ GCTGGAGCGGGACCGCGAGGTCACGGTGCAGCA 4488 28 100.0 33 ............................ GCCGCGTACTACGCGCGCCTCACCGGCGACCAG 4549 28 100.0 33 ............................ CTGGGGCAGGACGACCTTGACGACCCAGCGGTG 4610 28 100.0 33 ............................ CTCGAGGCCGCGCGCGAGGGCCAGGAGCAGGAC 4671 28 100.0 33 ............................ CCCGGAGGCCGTGCCCTCCTGCTCGTGGACGGG 4732 28 100.0 33 ............................ GGGCGACACGGACGAGGAAGACGACCGCAAGCG 4793 28 100.0 33 ............................ CCCGTGGAGAGAACCAGCCCCGTCGGGCGCCGT 4854 28 100.0 33 ............................ GCAGCGCGAGGAGGACCAGGCGCGCGCGGACCG 4915 28 96.4 33 A........................... GGCGACCACACGGTCACCATCGAGCGTGTTCCC 4976 28 100.0 33 ............................ ACGCGTGATCGAGATCCGGACGCCGTTCACCCT 5037 28 96.4 33 .C.......................... GCACCACTTGGCGGCCTGGGCCCGCACGATGGT 5098 28 89.3 0 ........T.....G....A........ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.6 33 GTCGGCCCCGCACCCGCGGGGATGGTCC # Left flank : CAGACCGGCTCGAAGCACAAGCGCGGCTCCGGCATCATCCAGGTGCTGGAATGCCGGAGTCGCCTTACCGAAGTCATGGACCCCGCACAACCACGCGAAGAATCGGCGCCCCTTACCGAAACCTGCGATGTCATCTACGGCCTGACGAAGCGATGGTGACAGGTAGTGATCCCAGATGAGTTCGGCGACCGCGCCGGTGTCGAGCAGGTGCTGCAGCAACAGGTTGGTTCTTCCTCCGCCCCTGCTGGCGCTCTTCCCCCAGAGTGCCCCCAGCGGTGAGAGCGCATTAGGGTCGGTTGCAGCGCTGGGAGGTTGACCGCCGTGTCCAGGGACTGTGCTCGTCACAGCCGGCAAAGTACCTGGCCCCACCGACAAAACGCTGCGACGGCCGCGTCGCTCCAAGGTTCGACGTCATTGATTGGTGGACGAACGCCGTGGGTTGTGAAATCCAACTAAATGAAAAACAGTGTTGCCTGTGTTAACGTCCCAGGTCAGCAAGT # Right flank : CGTAGGCGCGGGCGTCGCGGGCCACCCGGTCAGTTGGCGTCCGAGATCGTGACCGCGGGGATGGCTCAAGCCACATAGACAGGGCAACCCGAAGCGGTGCCCTTGGGACCTTGGCTCCCCAGGACGTTGCGCAAGCAGCGGTTCTTACTCTCTGTGTTGCAATGAAGCCAACCAGTCGTCAAGAGGGGGTGGCGTGTTGAAGGGGGCTGTGTTCAAGCGGTGTCGCTGTACCGACCCGGCGACGGGGAAGCGGTACGACACCAACTGCCCGCAGATCAAGAAGAAGGGGCACGGGTCCTGGTGGTTCCGGTATGAGGCTCCACCGTCTGCCGACGGGAAGCGGCGCCGGCCGCGGGTGGGCCCGTTCAAGACCAAGGAGGACGCCGAGGCGGAGCTCGTCAAGGAGCTTGCCAAGCTGGGAGTCGACGGGCACGCGTCGGACCGACAGATGACGGTCGGTCAGTGGCTTGATCGGTGGATCAACAGCAAGGTCGATCTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11-771 **** Predicted by CRISPRDetect 2.4 *** >NZ_AULB01000050.1 Actinomadura rifamycini DSM 43936 H505DRAFT_scaffold00047.47_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 ............................ GGTCAGGACGGCGAACGGGCCCTGGCAGGTGGG 72 28 96.4 33 ...........C................ CCGACTGGGTCACGTTGCGCGGGCTGGTCGCGA 133 28 96.4 33 ........G................... GAGCGGGCGGTGGATTTCCTCTGGGAGGCTGTG 194 28 96.4 33 .........................A.. CGAGCGTTGCCGCTCGAGCCAGAACGCGAACTT 255 28 96.4 33 ..........T................. TTGACAACCCTCAAGAGGAGTCACCCGCATGGT 316 28 96.4 33 ...........G................ CCGCCACGCGTACCGGTGGGTGCGCAGCAGGTG 377 28 100.0 33 ............................ GGAAGCGATGGCGGGCGCGGTCAACCGGTTCGG 438 28 100.0 33 ............................ CGTCAAGGCCGCGTTCGTCCACTGGGGCACCGA 499 28 100.0 33 ............................ GAACGCCGCCGGGCTCCTGACCGACATCGAGGC 560 28 89.3 33 .........C.......A.......C.. GAGGGCCTAACCGCACGAGACTTGCTAGGAGTC 621 28 92.9 33 ..............T......G...... CCACGACTTCGGCGGGAACGGGTTCTGGTCCGG 682 28 100.0 33 ............................ GCTGAGGTTCCGGGGGCAGGATGACGGACTGTG 743 28 96.4 0 .C.......................... | C [755] ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.0 33 GTCGGCCCCGCACCCGCGGGGATGGTTC # Left flank : CCAGGCCGCCG # Right flank : CGCGGTCCCTGTGACAGCGCCGGGCTCGGGCAGACGTCGGCCCCGTGTCAACGGCCAGGTGCCACTTGGCCGTTGACAACGGACAAAGTTTTCGGCCGGGACAGCCTCGTACGTGCTGTGTGGACGGCCGTGAGTTTTTCGGGGTTGGCGGCCGGCTTGGTTGAGGCCGGCGGCCAACGGTTCCCGAGGTGGGTGGTCAGTTGGGTTCGGGTTTGGTGGCCAGTGGGATGACTCCGCGGCCGGCGAGGGCTTCGGCGAGGCGGTGGGATTCGCCGCTGGTTTCGACGAGGTGGGCTTGGTGCATGAGGCGGTCGACGGTGGCGGTGGCCATGGTCTTGGGCATGATGGTGTCGAAGCCGGACGGGTGGATGTTGCTGGTGACCGCGAGGCTGCGGCGTTCGTAGGCGGCGTCGACCAGGCGGTAGAAGGCTTCGGCGGTGTCGGCCTCGACCGGGAGCAGGCCGATGTCGTCGACCACGATGATGTCGCAGCGGCAGATC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //