Array 1 55363-53291 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVJS01000050.1 Rhodanobacter thiooxydans strain FW104-T7 contig143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 55362 31 96.8 37 ..........A.................... CCGACCCATGCGGCACAGCCATACACCGAAATCATGG 55294 31 100.0 34 ............................... GCCACCGATTGCGCGTGCCGCCAGGCGGTCGAGG 55229 31 100.0 35 ............................... ATAGGTAGCGGCGATGTTCTGCACACCTTTCCACG 55163 31 100.0 34 ............................... GACTGCGATGCGGAAGAACTTGGACTTGGCCATG 55098 31 100.0 35 ............................... TCTTAACAAGCTATTAACAACCTCGCAGACCCCGC 55032 31 100.0 34 ............................... ATGGTACGAGACCCCTTGACTTTTGATGGTACGA 54967 31 100.0 35 ............................... GCTTCCTGCAGGGCGCAGGCCAGTTCGCTGACGAG 54901 31 100.0 34 ............................... GATGAAGTCTCGACGGTAGTGGCCGACCAAGCAC 54836 31 100.0 35 ............................... CAGCACGGCAAGCGTGAGTTGCGGCGGCTACCCCG 54770 31 100.0 36 ............................... GGCGCGGGCCTGCGCGACGTGGTGAGCCCAGCTGTG 54703 31 100.0 34 ............................... TCGTAGTCCCACTTTTCGCCGACGTTCACGGCGC 54638 31 100.0 35 ............................... TCCAACGGCAAAAGTCCTTGAAGCGCATTCAGGAC 54572 31 100.0 34 ............................... TTTTCCTTCTCGACCAGGCCCATGTAGCGCACTT 54507 31 100.0 35 ............................... GGTCGGTGATCGTCGGGAAGTTCTTGCCGACGGCC 54441 31 100.0 36 ............................... CAGTGCATCGGCGGCATGAGCTTCTTCACCCATGCG 54374 31 100.0 34 ............................... ACCATCGGCTCGCACAAATCCAGCCAGTCACTCA 54309 31 100.0 34 ............................... GCCTTTGCCGGAGTAGATCCGGCAGATCGTTCCC 54244 31 100.0 35 ............................... TTCGCCCTCGTCGTCGCGATGGTCGCGGCTCCCGC 54178 31 100.0 34 ............................... TCGCTGAGCGTCAGGCTGGCCCAGCCGTCGTCGC 54113 31 100.0 35 ............................... GACTACACCTGGTTGCACGGCTGATGGCCAAGCAG 54047 31 100.0 34 ............................... GGTTCAGCGAGATGTACGCGTTGTAGAGGATCTT 53982 31 100.0 36 ............................... GGCGGTCTGCACGTTGCCTGCACTCACGGTCGGAAG 53915 31 100.0 36 ............................... TCGCCCATGGCCTTGACCATGGCGAGCAATGCTGCC 53848 31 100.0 35 ............................... GTCGTTCGCGGCGTGGCCGGCGACGATGGAAACGA 53782 31 100.0 35 ............................... GTGTCAGACATCACCGGAAAGGCATGGTGTGCGGC 53716 31 100.0 35 ............................... ACGTCGATGGTGCCAGCCGGCGCCACCGCGGCCGG 53650 31 100.0 35 ............................... AATGGTCAGTTGACCTTTGCCGAGCCGGATAAACA 53584 31 100.0 35 ............................... ACGCCCAGGCTCTTGGTTTTTACCCCGCCGTTCAG 53518 31 100.0 34 ............................... AACATCCCGCTGTGGCTGGCGCCGGTGCTTGAGA 53453 31 100.0 34 ............................... TCGTTGGAGTAGCACCAGTCGAGCAGCAGGTCAT 53388 31 100.0 36 ............................... GTGACCTGTGGAAGCGCAACCCGAAGATGAAGGTGG 53321 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 32 31 99.9 35 GTCGCGCCCTCACGGGCGCGCGGATTGAAAC # Left flank : ATTTCTTTGGAAATAGGCAGTCGGAGCCGAAGCCATGATGATCTTGGTCAGCTACGACGTCAGCACGATTTCGCCCGAGGGCGAGAAGCGGCTACGCAAGATTGCCAAGGCCTGTCGTGATCTTGGTCAGCGAGTTCAATACTCCGTGTTTGAAGTAGAGATCGAGCCCGCGCAGTGGGTAGTCCTGCGGCGGCGCCTTTGTGACCTAATCGATCCCAGCGTCGACAACCTCCGCTTCTATCATCTTGGCGCGAAGTGGCAAGGCAAGGTCGAGCACGTCGGAGCTAAGCCAGCGGTCGACTTCAAAGCGCCGTTAATCTACTGACGCGAACCTCAAGTGTCCGGCGAAACCTAGACAGGTTCGCGGGAAGCCAACACATTGTTTCTGCGGGCATTGGGCGGTTTCTGCTGGTTCTTGGCGCGGACCTTGAGTCGGCAGTACGCGAGTTCGCGCTAGAAACGGGCTGGGACGAACGGACACAACAACTTACACTCGGATG # Right flank : GATCAAGGGCATCGGCCGCCCGCAGGGGCTCGGTGGTCGCGCCCTCACGCCGTCCACCGCGATGTTGTTGTAGCGGTTGTTCATGCCGGCGGCGGAGATCGCGCCGGTGCCCTGGTCGGTCACGCTCACGCGCGGGTTCAGCCGCATCACGTCGTCGATCGAGCGATTGCCCTGCGGGGCAGCCTGCAGCTGGCGCTGCGAGATGTTGGTGGAGAGACCCTTGTTCTCGGAAGTGAAGGTCTGCACCAGCGTCGAGGCGCTCACCGTCACCGCGCCCAGCGTGCGTGCCGACGCGCTGCCGGCGCCCAGGGCCAGGTTGATCGCGGAGGGCTGGCCCAGCTGCAGGTAGATGTTGTCCTGCTCGGCCCCGCCTCGCCCGGCCTCGACGCGTTCGTTTCCGCTTTACCGCTGCGGGGCAGTTCCGGAGTTACACCGGGATTCCCTTTTAAGCCCGACCGATGTCGCATCTGGTCGGGCACCGACCGCCACAACATATCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 83086-76847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVJS01000051.1 Rhodanobacter thiooxydans strain FW104-T7 contig144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 83085 36 100.0 37 .................................... CAGCCCCTTCCTCGTGCGCTTCAAGGACGACACGCTG 83012 36 100.0 36 .................................... CATCGTATGCAGACGATGGCCTGGGGCAAGCCGATG 82940 36 100.0 36 .................................... GAGCAGGGCGGCGGCATCCGTGGCGTGCTGGAGCAT 82868 36 100.0 36 .................................... ACGCGCAGATGCGGCTTGATCGGCTGGCGGTGGTGG 82796 36 100.0 36 .................................... AAGGTGAGCCTTCTCCATGGCCAGTTCTCTTGAAAC 82724 36 100.0 37 .................................... GATTCGCGCTGGGCGCGGATCTCGGCGGCAGACTCTT 82651 36 100.0 36 .................................... CCGTACACAGAAATCATCGGAAGCGATCAGTACCTG 82579 36 100.0 36 .................................... TGAACCGGGGCCAAAGACTCACCCCGATGATCTGAC 82507 36 100.0 37 .................................... TTGACCGGCGCGCACTGGGCCTCAAGTGCCGCGACCG 82434 36 100.0 36 .................................... TCGTCGGCACGCTCGGCGCGCTCGGCGCGCAGGGCG 82362 36 100.0 36 .................................... GTCGATGAGCTCGATGCTAACTTCGATGATACCCAT 82290 36 100.0 36 .................................... CAGGTGCTGTACACCGCGCCCAGGTCGGCCACCTGG 82218 36 100.0 35 .................................... CTGCGCGAGATGCTGCCGGCGCTGAACGCCACCGC 82147 36 100.0 36 .................................... CTCACCCCTGGACGCGGAGTGTATGGAAACCCCGTA 82075 36 100.0 37 .................................... GCGGTAACCGTGCGTCGTCACGCGGTCCTTCTCCCAT 82002 36 100.0 36 .................................... TGCAACCAGTCCAACCCCTGCACCTCGTCGAAGTAA 81930 36 100.0 36 .................................... CAGCGATCACGCAACTTTCCAGTGCACCTCGGCGGC 81858 36 100.0 36 .................................... TTCGATCTCTGGAATGAGACCGTCCGCATACGCCAG 81786 36 100.0 37 .................................... GGCGCGCTGCCGGACGTGGGCAGCAAGGTGGTCTATG 81713 36 100.0 37 .................................... ATGGACGACGTGCGCGCCAAGCGCCTGCCGCGCTACG 81640 36 100.0 36 .................................... GAAGGACACTCCATGACCTTCTCGGTACAATCTTCG 81568 36 100.0 37 .................................... CAGTTGCCATACGCAGGAGGAACGTAGGCCGAAGCCG 81495 36 100.0 35 .................................... TCGATGTAGCCGCCGGCGATCGTCAGGCCGTCCAG 81424 36 100.0 36 .................................... GGGCTGTAGAGGATCGACCACGGCGAGCCCAACTTG 81352 36 100.0 35 .................................... TTCGCGTACCACGCGCGCTGGCCGGCGGTCAGGGT 81281 36 100.0 34 .................................... TACGCGGCAGCCTCGCCGGCGCCCCCGTCCGTGG 81211 36 100.0 37 .................................... GACGTGATCCTGGTCGACGACCTCACCCGCTTTGGCC 81138 36 100.0 36 .................................... GATGCCGATGGCGCTGGATACGGGTTCGGTCATGCG 81066 36 100.0 36 .................................... CGGCACTGGGAGGCCCCAAGACGGCCCTCTCGCTGA 80994 36 100.0 35 .................................... AACTTCCCCCGCAAAGCCCTCGCCAGCGCCCTGCG 80923 36 100.0 37 .................................... GTGGCTTCCAGCTGCAGCCCGGCGTTCACCGCAAAGC 80850 36 100.0 36 .................................... TTCTGGTAGGCCGCCAGCGACAGCAGGCCGCCACGT 80778 36 100.0 36 .................................... TGCTGGACACCGCCGGCGGCCAGCTCGTCTACGTGG 80706 36 100.0 36 .................................... GGCCTCCCGGAAGACGTTGCGAGATACATGGCGCCT 80634 36 100.0 35 .................................... AAGTCCGGCGATGTGGTCCGGCATGAGTTCGGGTC 80563 36 100.0 36 .................................... TGCGCCAGACGGTGGTGCCGCCCGCCTTGTACACCG 80491 36 100.0 35 .................................... CACCGGTGCGGTTCCGATGAGTTTCTATTGCACGG 80420 36 100.0 38 .................................... AGCGTAGACCGTGCCAGCGTCCGCCATGACCACCGTGG 80346 36 100.0 36 .................................... TTCAGCGCGGCGAGCGGATGCGGCTCATCCGCCGCA 80274 36 100.0 37 .................................... GAATACACACTGGCCGGCGTGTCCGTGCTGGCCTGAT 80201 36 100.0 36 .................................... CCGCCGACCGCTTTTGCTGTCGCGTTGTATGGGATC 80129 36 100.0 35 .................................... AGCAGGTCGGTGCTGCTGAGGGAATTGAGCGTGCC 80058 36 100.0 36 .................................... TGCGGGTTTCTCGGTGCGCTATGCGCCTGGGCGGCG 79986 36 100.0 36 .................................... TACGTGACCGAACTTGCGCGCCAGGCGGCGCTGGAG 79914 36 100.0 37 .................................... TGGCGCTTGCGGCAGTATCAGCGTGACCGGCTCCGTC 79841 36 100.0 36 .................................... GGCGTACAGCTTGTCGGCTGCCGCGCGGAGGCTCAC 79769 36 100.0 37 .................................... TTCACCATGGCGCTGTCGGCGCCGGACTGGTCGAGGG 79696 36 100.0 36 .................................... TTGCCTAAAGGGTTGCGACTACGCCGCCGAAGCGGC 79624 36 100.0 36 .................................... CTGCAGCTGGTCGATGCTTACCGGCCAGCGCACGCG 79552 36 100.0 36 .................................... GCGAGGCAATGCGCTCGCATCGGCGCGTGCTTGTGC 79480 36 100.0 35 .................................... TCGAACGCACCGCGCAGGGCGGTGACCTTCTGCTT 79409 36 100.0 36 .................................... CAGCCACGCGCCGAGCATGCCGGCCGTCTCGCAGAT 79337 36 100.0 36 .................................... AACTGCGGCGAACACCGCCACCGTCTGCCCGACCAT 79265 36 100.0 36 .................................... TTCGTCAACGATGTGACCGGCGAGCAAGGCGCGCGG 79193 36 100.0 37 .................................... AGGATCTAAGCCATGCGTATCATCGCGGCATTCCCCG 79120 36 100.0 35 .................................... GATACCGAGACCGACGTGGTGGAGGGTCACGAGAA 79049 36 100.0 37 .................................... TGCGGCTGCGCGCCGCGCATACGTGATGCCAGGGTTG 78976 36 100.0 36 .................................... AAAGGCGATGCGCTCATGCTTTTCACGAGACGTAAG 78904 36 100.0 37 .................................... TCGGTTTCGATGCGCACGGCCTCGGCTCGCGCCGCAT 78831 36 100.0 36 .................................... TGGGCCATCAGCAACTCAATGACGCCGTTGCCGGTG 78759 36 100.0 36 .................................... CGGAGTAAAAAGAGACTTCCTCCCCTTTCGGCCTCG 78687 36 100.0 35 .................................... TCCCCGAGCGCGGTGCTGGACGGCACGGTGAACGA 78616 36 100.0 37 .................................... TTCGCCGGTTGTTCGGCCGTGGGATACCGCCGCCGAG 78543 36 100.0 35 .................................... ATGGGGTATCCCGTGGAATGGGACTACTGCGCGCC 78472 36 100.0 37 .................................... CAGATTTCGCGGGCTGGTTCGTACTGGTCGCGCTGTT 78399 36 100.0 36 .................................... CGTTCTTCTTCTTGCGCTGTTTACCATTTTTGTCTC 78327 36 100.0 36 .................................... TAGATGCGGCCATCGGCCAGGCGCAAGCGCATGGCG 78255 36 100.0 37 .................................... TAGCGATAGCCGGTGGCGCGGCTCACGCCGAAGCGAG 78182 36 100.0 36 .................................... CGATACTCATGTGCCCGCTCCTCATGCGTGAATTTC 78110 36 100.0 37 .................................... CACAACCCCCGCACCGGCGAGCCGTGGCTACACGACG 78037 36 100.0 37 .................................... ACAGGATCGTAGTGCAGCGGAACATTAGACGAGGTGC 77964 36 100.0 36 .................................... GGCGTCGTGCGCCGCGCGGCGCCGTCCATCCCTACG 77892 36 100.0 36 .................................... GCCGGCAAGTTCTTCGGCCAGGGGGCCCAGCCGCAG 77820 36 100.0 36 .................................... TATCAGATCGACCACGTATCCACGACCTCGGCGCAG 77748 36 100.0 36 .................................... GACCAGGCCACCCGCGACAGCGCGGGCGCCTTCCTC 77676 36 100.0 36 .................................... ACCAGGTAGGCCACCGCCTGCTGCGCCTGCGGCTTG 77604 36 100.0 35 .................................... GACAGGATGCCCTTGGCGTACATGCTGGCGTTGCG 77533 36 100.0 37 .................................... GACGCGGTGCTGGCGGCCTCCTTCACGCCGCAGCGCG 77460 36 100.0 36 .................................... ATGGTGGCTACGGCGTCGTAGCGCTTGCCCAGCCGC 77388 36 100.0 36 .................................... GCCGGCGCGCTGTCCGCGATCAACCAGCAGATGCTG 77316 36 100.0 37 .................................... GCGCGGCTCAACGGCCTGGACGATCCGACCAAGCGCC 77243 36 100.0 36 .................................... ACCACGAACAGCCCCACCGACGTGCGCAGCAACGCG 77171 36 100.0 36 .................................... TCGAAGTCCTCCACGCTCTCATTGGCCGGGTCCCAA 77099 36 97.2 35 ......................C............. AGCGGCACCGAGCAGATCTTCATCGGCTTCCGCAG 77028 36 100.0 37 .................................... TCGATCGCCCAGAAGGGTTCTTCTTTCTCGATATGCT 76955 36 100.0 37 .................................... ATGTTCCGACGACTGCGGCCCTCTAACCGAAAATGCA 76882 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ====================================== ================== 87 36 99.9 36 GTGATCCGCAGCGAAGAGCTGCGGCCTCATTGAAGC # Left flank : TGGTGACCTACGACATCCGCGACGACAAGCGATGGCGGCGTGTATTCAAGACCATGAAAGGGTTCGGTGAATGGTTGCAGCTGTCGGTCTTCCAGTGCCGTCTGAGCCGGCGTCGGCACGCCGAAATGCTGCAGCTGCTCGACGGCATCATCCTGCGCCGCACCGATGCCCTGCTGGTCATCGACATCGGCCCTGCCGACAAGGTCAAGCCTCGCGTGGTCAGCCTGGGAGACAAGTTCGACCCCGTCGCCAGGGAGCCCATTATCGTTTGACCTTCAAACCTTCACCCTCGTCTTCTCTCGCCCCATCGCCACGAGCACTCCAGTGACACCGCGAAACCCGGCCACCGCTCGCACGGCAACGCTCTCTGACAATCAAGCAGTTACCCGCCCATGTTGCCATCCGGCATCACGCGCGCTAGCTTGGCATGCGAGCGTGGCAGATACCTCTCGCACGCAACCACCAAACAGTCAACCCGCACAACGACTTGCGGAAGGACT # Right flank : GCCAACGGTACGGAATCGCCGACGGCACGCAGCGGACCTCCGAGATTTTCACCAGCTGAAGGGCTCTATTCTGTGCCAGCTATATGGTTATGGCCGAACAGCTCTCCCGCACATGGGCGAACCGCTGTTCCAAGCCGAAGCGGCGTGTGTGCACCAGCCCGCGAGAAAAGCGCGACATAGCCACGCTTCCCGCATCTCTGCCTTGGTCGCAACTTACTTGACTGAGAAATCCTTGCTGGCGACCTGGTTGCCGTCCAGCGAGATGTCCACCTTGTAGTTGCCGGCCGGGAAACCGTCCGGTTTGCTGATCATGAAGGCGGTGGTCTCCGGGCCCATCGCATTGAGCGTCTTGCTGTCCTCGTGCACCACCTGGCCATCCTGATAGGTCCATTTCGCCGCCAGCGTCGCATTGCCGTTGCCGCTGGTGTCGACCGAGGCGTAGATGGTGTCCTTCGGTGCGAAGCTGGTGCCGCTGGCGAGGATCTTGTGGTTTGCGTCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCGCAGCGAAGAGCTGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.50,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //