Array 1 71714-72902 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMX01000008.1 Helicobacter pullorum isolate 35818_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 71714 36 100.0 38 .................................... CTGCCTATATAGTTTTTCATTCTCTAGACTATAATTAA 71788 36 100.0 36 .................................... CAGATACTTTTAACTCTTCTTTTTCATACTGTTCTA 71860 36 100.0 32 .................................... AACTTTACAAAGAACATTTAAAATTACTATTC 71928 36 100.0 35 .................................... CATAGCGTAATTTAAAATCTCAGAACTAGTCATCA 71999 36 100.0 33 .................................... CACCTACCTTGTCCACCTCCACATATATAAAGA 72068 36 100.0 36 .................................... CTTAAAGTCAAGCATTAGATAACCTTCCTTGAGTAA 72140 36 94.4 39 CA.................................. TACAATGCGATAGTTTCTCCAACCTCAAAAAATCCATCG 72215 36 97.2 37 ......................G............. TAATCGTGCAATACATAGGCTTTTGTAGGGCTTCCAA 72288 36 100.0 34 .................................... AATTTAAAGAAATGTTTATAAGTTAAAGTAGTAG 72358 36 100.0 38 .................................... TATTCCTTTTTTGGAATAACCACATATTCCTTTTTTCG 72432 36 97.2 35 .....................T.............. TTTTTTTAATGCACTCATGAGTGCCTCCTTTGTTT 72503 36 97.2 40 .....................T.............. TTTAAAAAGCTTAACTGCAATTCAAACTCGCACTTAACTT 72579 36 97.2 36 .....................T.............. TTATATCATCACTAGAATCCGACTTATCAAGCTTAC 72651 36 100.0 37 .................................... TCATCAATCTCTTTCATTATCTCCCGCCACCGTTTCT 72724 36 97.2 36 .....................T.............. ATTATTTTGTCTTGATATTTTAATTCTATGTATGCA 72796 36 97.2 34 .A.................................. AAATTTGCTTCTCCAAAAGGAGGAACATACTATG 72866 36 72.2 0 ............A...TAT.....AA..T....TTT | C [72896] ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 97.0 36 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : GTCTATGAGTGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGACCCATTTGCTCCCATAGATTTGAACTTCTAGCGTTCAAAAGAGATTTGCGAAGTTGTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCACACAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : TTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCATTTTTGCACATTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGTAAAATGCATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTTCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAACCTAGAAAATCTCGATAAATCTCTTTTG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTTAAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 92098-90858 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMX01000010.1 Helicobacter pullorum isolate 35818_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 92097 36 100.0 30 .................................... GAAATGATTACATATAACACGACTTTAAAA 92031 36 100.0 30 .................................... ACAATGGAGATGATTACGAATACATTCAAA 91965 36 100.0 30 .................................... AGAATGTAACAACTGCTTTTAAAAAGGAAT 91899 36 100.0 30 .................................... AAGAACTTCAGAAATATTTAAAATTCCACG 91833 36 100.0 30 .................................... TGTAACCTCAGGAGAGTCTGGAACTTCTGT 91767 36 100.0 30 .................................... ATTGTTGGCTCTGCTATTGGAGCAGCTGGA 91701 36 100.0 30 .................................... TCTTTGACTTCCTTGCACTGCGATAGCCTT 91635 36 100.0 30 .................................... ATCGCTGGACGCGAGATAGTTATCAATTCT 91569 36 100.0 30 .................................... ATCATCTTTACTCCAATTATAGATAAATAA 91503 36 100.0 30 .................................... GTCAAATGAATGGTCTTTTCGCATTTCTCT 91437 36 100.0 31 .................................... TGACGCTGTTAAACTTTCTCACACTCTTTGG 91370 36 100.0 31 .................................... TGCTGATGGCGATAATTTTTCTGATAGCTCT 91303 36 100.0 30 .................................... CTTTCCGTACGCGATTTAAGAGCTTCTTCT 91237 36 100.0 30 .................................... AAAATCTCATCCATGTCTTTTGGTAAAACA 91171 36 100.0 30 .................................... ATACCAGGAATATCGCTATCACAAACCTTT 91105 36 52.8 39 ................NNNNNNNNNNNNTAA...GG GACTAAAACGAGGTTCCAGCTGGTGAGCATAAAGCATTT 91030 36 100.0 30 .................................... TGAACTCTCAACTCCATCAGTATAGCGACG 90964 36 100.0 30 .................................... TTCTAGTGTTGAAAATATTGATGATGAAAC 90898 36 91.7 0 .........................CC....T.... | C,GA,AG [90862,90866,90873] ========== ====== ====== ====== ==================================== ======================================= ================== 19 36 97.1 31 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGGGGGAGTATCCGCTGTCTTATCATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGATCCAAAAAATCTCGTGCTTTTTGGGTTTGATGAGAAAAAGGGAGAGTATGTGTATGCGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGCGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTACTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : CATTACTTTATTGTTTTTGATATAATTTAGGTTTTTTAAAATATTTTAAATGATGTAGTTTTTGATTACTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTGCGATAAGCTAATGTGTGGTGAAAAATTAAGAGTTTTAGATTGTCTTATCTTTTGGGGTTTTTCGTAATTTAGACTAAAAAATCAAGGATAACACACCGCAAGATTCAAACATATTTTTTAAGAATTGAAGGAAAAATCATGGTATATACTACTTTTTACCAAAGTCCTATTGGTACAATACTTTTAGCAAGCAAAGATAATAAGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAAGGAATCTACACAAGAAAAAGACGATGAACCTATCTTATTGCAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTAGACTTGGCACCTAATGGAAGTGTGTTTGCCACAAATGT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //