Array 1 11084-6156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000124.1 Anabaena aphanizomenioides LEGE 00250 NODE_185_length_15097_cov_13.9094_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 11083 36 100.0 43 .................................... ATCCCAGGCTTCTCCTACAGTAAGAGATCCTTGCTTTTCTAAA 11004 36 100.0 37 .................................... ATCATTTTATGGATACAGCAACTTCATTAACAGTAAT 10931 36 100.0 40 .................................... TATATTGATCAAAATACTGGATATCCTATTGAGGAAAGAT 10855 36 100.0 39 .................................... ATAAAAATAATCTCTAACCGCACCCCGTCCCCCATTAGC 10780 36 100.0 36 .................................... GAACAATTAGAACTACTTGGTTCTAAATCAGATAAT 10708 36 100.0 33 .................................... CTGATTGACCAGCGCGATCGCCAGCAGCATATC 10639 36 100.0 38 .................................... GTTCATGGCGATCGCGCTCAATCCCTGGTGGATGAGTA 10565 36 100.0 34 .................................... CTTTCTGCTGAAGCTTTAGATTCAGCAATTTCTT 10495 36 100.0 41 .................................... TTCTGCAAATTAGCAAATGCTCCAACCACATCAGCTTTATT 10418 36 100.0 36 .................................... TAGTTTAAAGTTTTCTAAATAAATCAACCGCCTCGG 10346 36 100.0 38 .................................... TCTTTCTTGCCTCCTTGGTTGTAAACTAAGCCTATCAA 10272 36 100.0 36 .................................... TTCCTCATCTGTCGCACCACCCAAGGCTTCTTTGAG 10200 36 100.0 41 .................................... ACTACAATATCTGCCTTCGCTTGACTATTTGCCCAATCCTG 10123 36 100.0 34 .................................... AATTTCACAATGCCCAAGGATGCAAATATAATTG 10053 36 100.0 34 .................................... TCTACTACGTCTTCTGAGACGGTAGTTACTTGGG 9983 36 100.0 37 .................................... TGTATTTGTTAATCATTTCGCTTTTCCTGAAGTTATA 9910 36 100.0 38 .................................... TGATTCCACCGTCTAGACGTTTGTCCTAATGCTACAAA 9836 36 100.0 36 .................................... GGTAAGCATTGTAGTCTATAGGTTCAACAGCCGCAC 9764 36 100.0 41 .................................... GCCCCTCTTTATCTTTGTGATAACACAAAGGTAAACACCTG 9687 36 100.0 40 .................................... CGAAGAACTGGGCATGAATGGCAATACCCAATTTCTTGCC 9611 36 100.0 42 .................................... GGTCTGTAGGAGTATCTGCGGATGAGGTTAGTTCGCTCCTCT 9533 36 100.0 40 .................................... TTTATTAGCTGTCAACAAATGCGATCGCTCTGCATCTATA 9457 36 100.0 37 .................................... AACTCAAAGATCGGCGATCGCGCCGGTGACAATTTAA 9384 36 100.0 36 .................................... TCAGCTAGATTTTTCAAATTATCATAAGCACTTTTG 9312 36 100.0 38 .................................... TCCTTTATATTCAAAAGACACAATGGTGCTCCTGTTGT 9238 36 100.0 38 .................................... TCCCTGCCTTTGGATCAGGCTTCTATCCATTTATGTCT 9164 36 100.0 39 .................................... ATATGATTGACGTACCTAAAACTGGCTCTGGCGCTGCTC 9089 36 100.0 40 .................................... ACCTACTCAAGTCTGCAAACTAAGATCAACTTCCCATACC 9013 36 100.0 38 .................................... GTTGCCAACGCTCAAAACAACTGGTGTTTTCTCTTTGG 8939 36 100.0 41 .................................... TTAAATTCCTAAATAAACAGAAACAAAAGGATTAAAATAGT 8862 36 100.0 37 .................................... GTGATTTTATCTTGATATCCTGTTATTTTCCCATTTT 8789 36 100.0 35 .................................... TTAAAGGTGTGCCGACTGGAAGCTGAACTCTGTTT 8718 36 100.0 35 .................................... CCACCTTTCTCTACGGCTAGAGCACCTGTGAAGCC 8647 36 100.0 39 .................................... AAAAAGAACAGAGAGAAGGAAAACTAAAAGTACAGGTTA 8572 36 100.0 34 .................................... TTGACAACAAAGCTGATATAGTCAAGCGCAATTA 8502 36 100.0 39 .................................... TATTCCGCTTGCAAAACGGACATTTTGGCGTTGAGTTTG 8427 36 100.0 35 .................................... GTTAATTCAGCACTGCTCCTACCCACTTGTCAGTT 8356 36 100.0 40 .................................... CCGCATATTTTACTCCATACATTGCTTAATCAATAAATTT 8280 36 100.0 35 .................................... AACTATTTACGGTCGATAAGGAGAGCTAATCTTTG 8209 36 100.0 44 .................................... AAACCTTCTTCAATTTCTAATTTCAGTTTGTCCCCGCTTGGAGT 8129 36 100.0 34 .................................... CCTCCACTACGGGGAATGCAAAGCAACTCTTCAT 8059 36 100.0 40 .................................... ATGATTTAATTGGTAATGCGATCGCTCGACTATTAGAGGT 7983 36 100.0 37 .................................... GCGATCGCCTCATCAACCGCTGTTTCTACTACTTCAA 7910 36 100.0 36 .................................... GAGCTGAAGTAGAGAGGCTACTAGTGGAGAACGCTG 7838 36 100.0 35 .................................... TAAAGACATCCAGAAATGGCTGCTTGCTGCAGCTC 7767 36 100.0 37 .................................... GCCTTAACTGCTTCAGAGAGCCTCGCGGCTTTGGCAG 7694 36 100.0 39 .................................... GTGTGATACCTGCTTCTTGCTCTTCCTTAGTAGGGAGAG 7619 36 100.0 35 .................................... CCCCTTACAACATCCTTAGCACTTTTTGCATTTAT 7548 36 100.0 38 .................................... ATGCAAACGAAGCTTACCTAGCTGACCACTACAACATC 7474 36 100.0 40 .................................... CTCACCACTTCTTGTTCAGTGGGAATGGTGTGTTCATTTT 7398 36 100.0 39 .................................... AAGATAAGGTTTACTTAGGCAGCATACTAGCCGAGAACA 7323 36 100.0 39 .................................... TTTGATGGCGATAAAGTCAGTGGAGATGAGTTTTACAAG 7248 36 100.0 39 .................................... ATAAAGTTACGTCGTTACAGGCTGCATTAGAAATAGCAA 7173 36 100.0 36 .................................... CTGTGCTTTTAACTCAAAAGACAGAGGACTGAAATC 7101 36 100.0 42 .................................... TAGCCTTTGGTTTTTAAAACAAGTAAAGCAATCAATATAGGG 7023 36 100.0 38 .................................... AGATAAAGTAGTTCTTGCTGTTATGACTTTGCTCACTA 6949 36 100.0 45 .................................... AAGAAAGACCCAAGCGGTTTGCATTTAGAGACATGGTACAAAACC 6868 36 100.0 40 .................................... TGGGGACTTTCTTCTCTGAATTGTTCCCAAGGAAGTAGCT 6792 36 100.0 47 .................................... ACCCACACCCAAGTATCGGGTACTTCAGCTTGATACCTTTTGACTGT 6709 36 100.0 36 .................................... TTGTGTTAGCACAATCGTTACCTGAATCACTACTGA 6637 36 100.0 41 .................................... TTTCCATTCTTTTCTCCTGAAATAATTAGTAGCGCGATCGC 6560 36 100.0 36 .................................... TAACCAGTGAAACCAAAGCACTGTCACCGTTATTAA 6488 36 100.0 39 .................................... TAGATAGCCTTGCCTTCTTTTCGAGAGTTACTGCCACCA 6413 36 100.0 42 .................................... AAATCCTATAGTGTCTGAGGGGTGTCTGTTGTTTACAGCTAA 6335 36 100.0 34 .................................... CCAAATTTGGGAAATGACCCGTTAACGATCGCAC 6265 36 100.0 38 .................................... TTATTTTGGATACAAACTCAATCCAAACAAAGGAACAT 6191 36 75.0 0 ..................T.....C.AC..AACC.A | ========== ====== ====== ====== ==================================== =============================================== ================== 67 36 99.6 38 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Left flank : TTGCTGATGTTTATGTTATGTTTTTGTATGTGATTGCTTACGATATTCCTGATGATAAACGACGGAAAAAGATAGCTGATGTATTGGAAGGATATGGACAGCGTGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACAGAGAAGTACAATGATTTACGTCGTCGGTTAAGGAAGATTGTTAAGTTAGAGGAGGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTCTTTCTCAGGTGGAAGCGTGGGGAGTGGGGATACCAGTGATTGAAACGCCGAGTTCGATTATTGTCTAGTTGTTAGGGAGGCGCGGCGTTAGCCGAAGGTCAGGTAAAATGGCTGAAATGTTGATTATTCCGTTGCGAGCTTCGGTTGCTTGCTGGGTAAGGGTTATGGGGATTTTTGAACGCTGTGGGAAGGCAATCTGTCCACCTTTTTTCGTGACCTTCGGAAACCGCCTCTGGACTCCTTGCACTGTCTGGGTTTAAAATGGAGGG # Right flank : TTACCGTAGGGGTTTAGCACTGCTGAACCCCTACTTAATAACATTTGAGTATCAACAAATCAGCATAAAAATACACAATTTGCAATTAATGTCAAAAAATAAACAATATTTTTAATTAAACTAAATAAACACCTCAAAGCCTTATACACAAAGGATTTCAAGGTGATTTATATTGAAAATTAAATATTGTCAATCAATAGACAAATACTAAATCCCGTCATTACAATATAAATATTGGCTACACAGGGGAATCACCGATGACAGCAGAATATTGGCGAGCTAAGATTTGGGGGTTACTGCATGACCCTATACTGAAGGCATTACATAACAATAGCGGACGGGGTAAAAATAGCTTCTATAAACAACTAGAAGTTATGAAACCTTGGGTTGAGACAGGTAAAACCCCAGATCAATCAGGTGGTAAAGTATTAAAAAATATCCTCTTAGCGGATTATATAGCCTCAGCCAGTGATAGGTCAGTCCTGGGTAGCGTCACAGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 13722-11909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000130.1 Anabaena aphanizomenioides LEGE 00250 NODE_192_length_14406_cov_11.8012_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 13721 37 100.0 38 ..................................... GATCTTTATGCTTGTGTGTTTGCAGGGGGTATATATAA 13646 37 100.0 43 ..................................... TTGCGGCCACACATTGAGCAGCAAAGTCAGCATACTCAGCCAA 13566 37 100.0 46 ..................................... CTTGTTCATCAGAAGTGATTGACAAGTGATTGATTCATTGATAGAC 13483 37 100.0 44 ..................................... TTCATACCCTCTTGTTTCTGGATTCCGCTTGCAGATTAAACCTC 13402 37 100.0 33 ..................................... AGTAATGCCGTTCTCGCATTGCTCCTTAATGGT 13332 37 100.0 38 ..................................... ACTATGACCTCGCTCAGACCAGTTTTAGCCTCACTGGT 13257 37 100.0 45 ..................................... CTCGCACAGTGCATTGCAGTGATGCCACCATTTTTTATACTGTGG 13175 37 100.0 43 ..................................... CTTAACACAGTTTAGGTTCTTCCCTGATGGGATAATCACCAAA 13095 37 100.0 36 ..................................... CTGTCCTTCCTTCCAGGACTCGAACTCTGTTTCCAT 13022 37 100.0 42 ..................................... TCTTCGATAGATACAGGCTCATACTTTCTAAAGATATTACTG 12943 37 100.0 35 ..................................... CCTGCGGTATTTTTTACACCCCCATTCTTGAAGTA 12871 37 100.0 36 ..................................... AGGGGGTGTACCCCTGTGAACCAGTCACTATTAATT 12798 37 100.0 43 ..................................... TTTGTTAAAATCGCTGATAGCTTTCTCAGTTAGTTTCTCTAAT 12718 37 100.0 46 ..................................... CAGAGCCTCCCTTCTTTCTTTTGAGGAGGTGTTGGAAGAGTACAAA 12635 37 100.0 34 ..................................... CCCCGTGGGGAAAGTAAATCAATATTATCCCCAG 12564 37 100.0 36 ..................................... TCCATCTCTTCCCATTTAGGAAGTACCCGATTAGTC 12491 37 100.0 40 ..................................... ACTGTTAGAGTTAAAGGTTTCATTTAACTCATTAATTTCC 12414 37 100.0 37 ..................................... ACCCAGTTGCCCATTGGATTGTTAGTAAAATACCCTT 12340 37 100.0 45 ..................................... TTGTCTAGTGCATCGTATGCGCCTTCGAGGACTTCCGTGGCTTGG 12258 37 100.0 41 ..................................... AACTGGTCATACTTAGCCAGTACATCCAACAACAACCAAGC 12180 37 100.0 45 ..................................... ATCATTAGCATCTGTGTTTGACTGAAGTAAAATAGAAAGATTGCG 12098 37 100.0 42 ..................................... GCCAATAGACTTTTTAGATTGTTGATCACCCCTTGCAACCTA 12019 37 100.0 37 ..................................... TTTCTAATTGTGCGATCTTAACGTCACGTTCTTCCAT 11945 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 24 37 100.0 40 GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAAC # Left flank : CCTGTGATAAAAATTGATAATTTATCGTCCGAATGCCGATGCTTCCAGCACACTTCGCGAACGCCCGTACAGGAGTCAGGAGTCAGTGGTTTGACTTTGCTTTTCCCTTCTGCCTCCTGCTTTGTCATAACGACAATTTTTCACACCCACTTGGTTAACTTTTGTAAATTTGAGAACTGGGGAAAATACAGCATTTTAACTACCAATATCCTTAATATTTCGTCGTTTGCGGGATTGTAACGGAATGTTAATAACTTTGATAAGTTTGGCGCAAGCAGCTATCAAGATTTACATTTAGTAATGTTCTGTGATTTTGAGAAAATGTTGGTTTTTTGGGTTGACATCTTGGAGTTTTTCGGTTAAATTATTTTTATTGGCTGGAAACAGCAATCTGTACCAAGAAAATTGAATACTGACTTTGCTTGTTACATCTTTGTTTCCGTAGCTTGGCGCAAATGCCCTTTGAAAGCTAAATGTCACAAGGTTTCCGTGAGTATAGG # Right flank : ATTTGATAAGCTTTTTAAATATGAAATTTGCCAAAAAAGTTTTGCACCATCATTTTCGCAATAAACCCTAGTCATTCTCAAGATTATTGCTATAAATTCTCAACTATTTAACGAGTTTTGGTTTTTTCAGCCATTGATATTGACATACACTTTTTTTCTGGTATGATATGTGTATGATCCAAGGGAGTTATATATCTTCCAATAACCAGCAGGAATTATTTTCTAACTACACTTCTTTTAATACACTTCCTAAACTATTAACTAACTTATTAATATGCTCTTTTTCATGGGTTGCCATGATGGTAACTCTAATACGACTTGTTGGTACTGTAGGAGGACGGATGGCAGGAGCAAAAATACCCGCTTCCTTTAGTTTCTTACCTGCTGTTAAAGCTGTAGCAGCATCAGGTAATTGAAAACAGAAGATCGGAGATTGGGAAGGTAAGATTTTTAAGTTAGGTGTTAACTTAGGTGTTAACTTAGTTAAATTTTCCGTAACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCTTTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 13997-12779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000131.1 Anabaena aphanizomenioides LEGE 00250 NODE_193_length_14240_cov_16.7891_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13996 37 100.0 38 ..................................... TAGCAGCGATTTCCTTAGATGCTTTTTCAACAGTGAAA 13921 37 100.0 35 ..................................... TCTGCATTAAAAAGCTGGAGACTTAGCCCCAGCAT 13849 37 100.0 36 ..................................... AGCCTGGTATGAATCACAAGCTTTGATTCCTCCCAC 13776 37 100.0 34 ..................................... AAAGTAACAGAATGGTGTACACGTCCAACACACA 13705 37 100.0 37 ..................................... GTGATTGTGGTTCTACTGCTGATGCTGGTGTAGCTGT 13631 37 100.0 33 ..................................... CCGCATAACTCTACCACTGCTAGAATATACGAC 13561 37 100.0 41 ..................................... AATAATTAATAATTTAAAAAATTTGCTCAGTATTGCTGCAT 13483 37 100.0 40 ..................................... CAAAAACGGTAAATCCTACCGTAAAGTAAATGTAAACCCA 13406 37 100.0 38 ..................................... GAATTACAAGAGTTATCTGATAATAATTACGCTTTGAG 13331 37 100.0 34 ..................................... TTTGTTCCCATTGCTGGCGATTTTCTCCTGTCAC 13260 37 100.0 34 ..................................... AGAACAATGGCAAATAACTTAGCAGTCTTCACAG 13189 37 100.0 40 ..................................... TTACTTCTACTTGCATTGCTTCACCGCCAAAGCATCTAAA 13112 37 100.0 35 ..................................... AGAAAATATCCGGCAAGTCGGTGGAAATGTCGCTA 13040 37 100.0 40 ..................................... TCAATCAATCGGTAATCAATGCCTGATTACTCTTAATATA 12963 37 100.0 36 ..................................... TATTGTGCTGACTGCGGAAAATGGATTAAGTGGTTA 12890 37 100.0 38 ..................................... TTCAGATTTGTAAATCTTCAGAGAATCTAGCAAGGATA 12815 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 100.0 37 ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Left flank : TTATTTTGTAGCTATAGCAAATTGCAAGTTTCCTGCATAAAATCCAATTTCAGAGGTGCTATTTTTTGGCTAATTCCCAATAGCAGGCATCTTCAGCACTGATTATAGCGTATAATCTGAGTATCTTTGCACTTAACCTTCATTTCCTCAAAAGCAGTTGTGGTGAAGGTTAGATAGTTTTCGGAGATGTCTATTAGGGATTGAAACATTTTTTCGTAATTCATAAGCCTAGCCATACCCTTG # Right flank : ACAAAAAAATAAACCCCACGATAAACGCGGGGAATAAAAAAACACAGCTTGGATAATTGAGAAATGCTAGATAGAAATGCTAGGAACGCAGAATTAATTCCCGGATAAAAATACCATTAATACTATTCCCAGGATAATAGATCCGCCACCGAGTACAAATGACCAAAAACGATGATAACTATTGACAACAGTGCCATTTTCGCTTTCTAGTTTAATTAAATCCATCCAAGGCATTACCCCACGACGAAACCATCCGGCAGTTCTCACTGGTTCACCAATTAAGCTTTGTACTCGTTTCATGCCAAATAAGAAATTACCAATGGGTCCAAAACGAGAAGCATAACGTAAATACAACATGCCGCTAGAGTCTTGGAGTTTGAGGTCAGAACCAAATTGATAACCAGCATCACCACGACCAATTAATTCACCTTGTAACATGGCTGGTTTTCCCCGTAAAGGACTAGCATAGGGGTCTGACATCAAGGTGAGAATATCAGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 7039-6854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000175.1 Anabaena aphanizomenioides LEGE 00250 NODE_246_length_11001_cov_12.5078_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 7038 30 86.7 45 AC.T.C........................ TTAAAATATTGCCAACCTCTGCTTTCATTGGCTAATAAATTGCAA 6963 29 96.7 51 ...........-.................. AAATTATTTTCTCTGTCTAATTCCTTTTGATGGTTCAAATACAAATTGCAA 6883 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 3 30 94.5 48 TTCAAATTACTCCCTATTAGGGATTGAAAC # Left flank : GACTTCTACTCAAGCGTTAAATAATAGTACCTTGCCTTATGTTGTGCAGTTGGCTAATTTGGGTGTGAAAGCTTTAGAAGTTAACCCCGCTTTAGGTAAAGGTTTGAATGTGAAAAATCATCGTTTAGTACATCCCGCTGTACAAGAGGTTTTTCCTGACTTGGGTAAATAGGTGACAGGTGACTGGTGACTGGTGACAGATATAAGTTTTTTGAGAGTTTGCCTGTTGCTGTTGTTCTTGTGTTTGCGCGAGGGGGTGGGTGTAAAAAATGGATGTTGTCAAAAAATGCCTGTATCTCTTGATAGGCTTGACTTTGAGGCTATTCATGTTCTCTAGACCCTCGCGCACCTTACACAGACTGGGTTTCAGCCTCCTGCTATTGCAATTCAAATTAAGTAAGTCGGCTTGAAAAAACCGAGGTATGTTACAAAAGGTAAATCCCCTGAAAGTCTCTTCCCTCTTGCCTTTTGCCTTGCCATAACGATAAATTTTAACGCCT # Right flank : CACCTATTGCATACATTTCCTTGCCCCTATTTTTTTACCCGCTTATTTTCTCAAATTATTGCCACATCTCATCTTCAACCGTCTTGTCACCCGTTAAGGATGCTCCCATTAATTCTGGAAGGTTCTGCTTTCAATAATAGCAGATGCAGAGCCTCTATGATGGCATTCCTAGTCGGATACTGGGAAAGAGAGACGAGAGAACGGCTAAAGGCGAAATATAAGCAATTTTTATCTATTTTTTTATATTTCTCTTGTTAATGAATTGATAAAAATTTGGTTACAAGAGCAAAAATTAAGAGATGATAGAGTTGATTGTATTAAAGGAAGATAATTGTCACCATGAATAAATTATTAGATGAATCACTGTCTTTGCAAGTTGCCGAAAGTATCAAAAGTAAAGCGAAAAAACCTTTTGATAATGCTTATCAAGCAGTTTTAGCAACCGAAGGTGCAAAGTATGTTCAAGGTTTTATAGTTTTTAGTGGTCATCCATTCAAACC # Questionable array : NO Score: 6.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:-1.5, 6:0.25, 7:-0.29, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAAATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5701-6107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000181.1 Anabaena aphanizomenioides LEGE 00250 NODE_253_length_10379_cov_11.4754_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 5701 35 100.0 40 ................................... CAGAAATGGCAAACTTAGACTTTATGGGATTACAAATCTA 5776 35 100.0 38 ................................... CAGAAATAGCTTTACTACCTTTAGTGATTGATGGGTAA 5849 35 100.0 40 ................................... CAGAAGCCCAAGAGATTTCAGGATTATTGGGCGACGGTAA 5924 35 100.0 42 ................................... GGCAATTTGGATGGTATGAGGACTGCATTAACCTAAATCCTG 6001 35 100.0 37 ................................... GAAACATTCTCTGACGAGAATTTTTGCTGAACTTTAG 6073 35 91.4 0 CGA................................ | ========== ====== ====== ====== =================================== ========================================== ================== 6 35 98.6 40 GTTGTTGCAACATTAAATAATCCCTATTAGGGATT # Left flank : TCAATGGTTGCCTTGGATGAAGATGGGTGAACAACCAGGACAACTTATATATAGTGCTATTGGTGGTAAGGTGGGCGGTTTTACAGAGTTACCCCCACTGTTACAAGCGGAAATTAATAACCGTTTGCCTTTGTATAAGCAAGCGCCGAATGCTTTTATGGAAAGGGAAGATATGACTTCTTGGTTATATTTTCAGAAGCATTTTTCTGATTATTTGGCTGGGGAAGTTTTTCCTTTACCAGCAGCGGAGGAAGGTTAGTTTGTAGCCCGAAATGCGCGGATGGGTGGGTGTAAATTTTGAGGTGTTGAAAAAAATGCCTGGATCTCTCTCTATGCAAGGATTGGGAGTTATTTGTGTAGAACAACCACCCGCGCACCTTACCCTGTCTTGGTTTCAACGTTTTTCCCTCTTGACGCAATTCCTGAAATGGACTATCATTAGAACATCCGCGCAACCGAATCTTGAAAACTACATATATCTAGGCTTCCAGGATGCCGCT # Right flank : TGAAACTGGAGATAGTACCCAAAATCAATCTATAAAATTGCAAAGTTGCAACATGAAATAATTGTGATGAAGATACAATCAAGCAACTCCATAGTCTGTATATTCCCGCATTTCAGGAGCTTGAAAACCTAAAATAATATCTTCCTTTGCAACCCCTCGCGCTACAAGTTCTTCAGCCACCATCATTTCCGTCATATTTTGCTCAATCCAGATTTTTCCCTCTTTAATATCCAAATGTAAAACACAACCATAGACACGCCGATGGCCATCCCATCCAACATTCATGACTTGGTAATGATCTTGTTTAGTATCAAAAACAGTGTAACAATCAATCTTACCATTGGCTATTGGGATGGCAGCATAAGCAGTCAACAACGACTGAATGATATTGCGATAAGATGCTATGGTATCCATTGTAAAATTACCTCTTCAATTGGGTCATAAATAATTTGTTTAATCTGATATCTCTCTATTGAAATTTGGGCAAATTCCCGCTTAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTGCAACATTAAATAATCCCTATTAGGGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 6944-7415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000189.1 Anabaena aphanizomenioides LEGE 00250 NODE_268_length_9937_cov_14.3696_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 6944 36 94.4 36 G..........................A........ TTCAGAGTGTAAAGTCCCCAAGGGGGGAGAAAACAC 7016 36 100.0 38 .................................... CTCAGTGGCAAGATGGATTATTCGATTTGAGTTTTTTA 7090 36 100.0 34 .................................... CTCGCCTGTGCCGTGATTGTCAAGCGCGTGGATG 7160 36 97.2 39 .........C.......................... CAGCCATAGGCTTCGATTGTTGTCACCAAATAGGCGACA 7235 36 97.2 38 .............T...................... TTATGTCAACTCCGTAGCCTGCGATCCGGCAGGAGTTT 7309 36 97.2 35 .............T...................... CTTATATATTCCTTGAAGAACCTCAAAGATATTAC 7380 36 94.4 0 ..................T................G | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 97.2 37 CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Left flank : AGTCTAATTGGGGGTTGCTGAGAAAGTCTTTCCGTGAGGGCATAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGGAGATTTGAAAATTTCTTTGCCATCTCTTGAAATCCCCAAAAATGCACACTTTTTCCGGTATACCCTTCAAAACCCTTGCACTAATTTCTGTGTTTATCAGCCTCTAACCTTTGATACATCAAGGTTTTAGGTTTATTCAGCAAACCCTAATTGATAAATTAAACGCAGATGGACGCAGATAAACGCAGATAATTTTGTACTTCTTGAGATGAGGAAATGCTATCTCAGGATGGAAAGTGGGATTTTTTGGGTGTTGAATGGGTGTTGAAGTAGCTAATGTTTAAGAAATGATAAGTAATATTGTCAATTTCAGGTGAGATGGGTTACTTTAACAAAAATGGTAAAAGTTTTTCGACACCACAAGCCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTGGATCGTTTACAGGATCAGC # Right flank : GAAAAAATCTAAATAATAATGGATATTAATTTACAAAAAGAAGAATTTAGCTATGCTTACATTTATGCTATTACCATAGCAGCAGGATATTCCTTTCAAAAATCATCAAGAATTTTAGATGTGGGCGGAATTGATGCCACAATTACGGGTACAGTAACAGATGATACCCTGTATGAACCACAACTAGATTTACAGGTAAAATCTACCTCACTAGATATCCTCAGTGGAGAAACTATTCGCTATCCTTTAAAAATCAAAAACTACAACGAACTCAGAAAAGAAAGAACCGTTGCACCTCGAATATTGGTAGTTGTTCTCATCCCCGAAAATCTGCAAGAATGGATTAAACAGTCAGAAACAGAACTGTGTTTACGTCGCTGTGCTTACTGGGTTTCATTACGTGGACAACCCCAAACACAAAACACCGAAACCGTTACTGTTTATATACCCCGCAAAAATGTATTTACAGTTGATGCTTTAAAAAATTTAATGCAAACGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAATCAACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : CTTTCCAAATCAATTTCCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 439-827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000200.1 Anabaena aphanizomenioides LEGE 00250 NODE_282_length_9285_cov_11.9369_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 439 23 95.7 50 ..................A.... CGGAAAGTAACTCTAGTCGATCTCCGTTCCTGCCTTCACTTTACAAAATC 512 23 100.0 52 ....................... CGCCTTGGCGGCAATGTCAGGGGCCACCTCGACCTCGGGGCTTTACAAAATC 587 23 100.0 49 ....................... CACAACAACAGCAGCGGAAAAAACAAACCTAGCTAATCTTTACAAAATC 659 23 100.0 51 ....................... CGCCCAGATAGCAGCACCGTTTGCGGTTGCATAGCACGACTTTCCAAACTC 733 23 95.7 49 .C..................... ACTCTCCGCTGATCTCACTGGGTAGTTTTTGGAGATCCTTTCCCAACTA 805 23 95.7 0 .A..................... | ========== ====== ====== ====== ======================= ==================================================== ================== 6 23 97.9 50 ATTTCCCCGCAAGGGGATGGAAA # Left flank : GCTCACAACTTCCCCTTAGACTTAGCTGCTGGTGAAGTTGCTCCTGTTGCTTTGACTGCTCCTGCAATCAACGGTTAATCTGAAACTGGGTTTAATAAGCTTAGTTAAATAAGAAAATACCCTCCAGAAATGGGGGGTATTTTTGTTTGTTTTTTAGTGGCAGGTTCACTGTTAATTGTCCATTATGGAACAGCTTGACAATTTCAGTGAAATCATCTACATTAATGTAATGTCTTCAAATTTATCGACACACCCCGCCCGAACCTTGAAAACCGCATAACTTCGTTCAGGTGTGTGGATGGCTTGCACCATAAGGATTTCAGGCTGCAATTTTCGCCATTTCTTGAAGTTTTTTTTCCATTTTTAAGAGGTGTGTGGATCAGGGTATCTGAAACCCTTGCTCTGTAAGGTTTCCAGAAGTGAACTCTTTCCAAACTAA # Right flank : ATAGCCTATTTTGCTATACTCTAATTGCTGATCAGCGACTTTCAGATAAAAAAATATACAATTAATTCTTGTGGGTAGGCATACTTCGACACGCTCAGTACAGGTCTTGCCTGTCCTTAAACCCGGATGGGCTAGAACGTCGATTTAGTAATGCTAGGTAATCTGTTTTTACCTTGTAGGGGCGAAGCATTCGGGTGATAACCTATCGGTGAAACCAGTTCATATTCTGTCCGAATGCTTCGCCCTTACGATTAATGAATCGGTGTTCTAGAAGCCCATCCCACAATATTAGACCTCTCCGAAAAAGATGTAGGGACAATTCATGAATTGTCCCTACGAATGGGTTTCAAGTTACGCTTATGTAATTTTCGGAGATGTCTATTGGATAATCTATTTCTTGGAAGTCCCTAAAATGGCTTTTTTCATCCTGTTAATCCTTTAATCCTGTACTTCGACTTACTTCGACATAGCTCGACTGCGCTCAGTAACCAGACATCCTG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCGCAAGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 253-2360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000229.1 Anabaena aphanizomenioides LEGE 00250 NODE_343_length_7065_cov_12.113_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 253 36 100.0 39 .................................... TCACTAGAAGATAACAAACCACAGAACAAGGAAGAAAAA 328 36 100.0 36 .................................... AAGCGTTACGGAACCCTTTCTCGCCAGTTTCATTAA 400 36 100.0 37 .................................... TAAACTGTGGATAGAAGACGTTGCTAACTGGGTTCGA 473 36 100.0 43 .................................... CTAAATGTACCCGACAACTCCGATTCTTCCACTTGGTAATCGA 552 36 100.0 42 .................................... TATCGGGATAATCCAATTCTTAGAGATGGATACAACTGTAGA 630 36 100.0 42 .................................... GTTTTTTAGTCCCCTACAGATGCGATCGCCCTCCTGAATACG 708 36 100.0 37 .................................... CTCTTGCAGTAGCCAGAACGGTTTTGTACCGCAAGAG 781 36 100.0 41 .................................... ATCACTTACTCTGCACACACTATTCTTTTTTTCTTTAAAAG 858 36 100.0 35 .................................... ACTCGCAGGAGCGCCCGTCCTCCAGAACTGCTCTT 929 36 100.0 36 .................................... TACTCCGGTGTAAAGTAATTGGATTGGTGAATCATT 1001 36 100.0 37 .................................... AACAGTTTCTTGTGTGGGAGAACTGATTTTTTGAACC 1074 36 100.0 37 .................................... TATCAATTCCTGGTCATGCGGGTCGTTAATAAATGTC 1147 36 100.0 35 .................................... TGACTTTACAGCGATCTTTGGTGGCGATCGCTTTA 1218 36 100.0 39 .................................... AGATCGACACCACCTTTGGCTTGAGCATTATGAACAAAC 1293 36 100.0 37 .................................... ATTACACCCTACTTTATGCACTAGCGATCGCATAAAA 1366 36 100.0 35 .................................... AATTTCAGAGGATAATAATTGCGATAGGTTGAGAT 1437 36 100.0 36 .................................... AACCTTTTGAGCAAGCAAAGCCTGGACTAATGACTC 1509 36 100.0 35 .................................... GATAGCGCGATCGCAATCCATCCCCGCAGCACCAG 1580 36 100.0 37 .................................... CAGAGAGCCTCGCGGCTTTGGCGGCAGCTTTTTCTAG 1653 36 97.2 36 ............G....................... CAACATGGAAACCTATGCCAGTACGTTGGGTTTTAA 1725 36 100.0 33 .................................... TAGCCAAAACAGCATTAATTCCATGCTCTGCAA 1794 36 100.0 39 .................................... TCTCCTTTTATTTGTTGACATGCTTGTTTTAACTCATCA 1869 36 100.0 43 .................................... TTGTCCTGAAATATATGGTTTTGGTTTTTGGTTGCTGTCACCA 1948 36 100.0 37 .................................... AATTGGAATGATTGTGCGCCCAGAGCCATGCTATTAT 2021 36 100.0 41 .................................... GTTATTACCTCTTCCACAGTTCCTTGAACTCCTATAACCCA 2098 36 100.0 37 .................................... ATGACCGTAGCCCTATCTTTTTCTGATTTCATAGGGT 2171 36 100.0 41 .................................... CTTCATGGGAAGGAGTAGAGAAATAGGTACGCAAACCATGT 2248 36 100.0 41 .................................... CGAATATCTAGACGCTGACAAACTCGACTAATTACCATCAA 2325 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 29 36 99.9 38 GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : GTAAGATATAATACAGTTTTTAGCTCAATAGGGGTTGCTGAATAAAACTAAAACCTTGATAAATCAAAGGTTTGAAGTAGTCAGTGAGGAACTCCTGGAACTTCTGACCCCTTGATTATTGTGTAGTTTTTCCGAAGGTCAGGTAAAATGGCTGAAATATTGATTTTTTCGTTGCGAACTTCGGTCGCTTACTGGGTAACGGTTTCAGGGATTTTTTACCGCTGTTGGTTAGTTGTTTCACCACTTTTTTTCG # Right flank : CGTAAAGCTAAAAAAGCTTGCACCTTGTTGATATTTAGACAATTTCAAAATAAAAAAATTTCTGGAACTCCTAACTCCCTCACGAAAAGACTTTTTCAGGAAACTCTATTTCTCCTGATTTGACAAAGAGAACCTGAGAAGATTTTAACCATTGAGAGTCAAAAGCACCCAAATGAGTAGTAGTAATTAAAGTCTGAAACCGATCTTGAATAGCATCAAGTAATTGATTTTGACGGGATAAATCTAATTCTGCTAAAACATCATCTAATAAAAGTAAAGGAGCTTCATTCACGACTTCTTCAATTAATTGTAATTCTGCTAATTTTAAAGCTAAAACTAAAGTACGTTGTTGACCTTGAGAACCATATTGACGAGCAGGAGTTTGATTAATAATTAATTCTAACTCATCCCTGTGGGGTCCAACAAGGGTAGTACCTCGGTGTAATTCAATAACAGAACGTTGTTGAATTTTCCCGAAAAAAGATTGTGTAATATCTTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 2513-4668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000240.1 Anabaena aphanizomenioides LEGE 00250 NODE_365_length_6524_cov_12.4171_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================== ================== 2513 37 100.0 36 ..................................... GAAAAAAAATTAAAGGGCATGACATCCAAAGAACAA 2586 37 100.0 33 ..................................... TGCCGTAATCTTTGCGGTAATCATTTTTTGTTG 2656 37 100.0 33 ..................................... TTGTTTTCTGAGACTTTAGAATTTCTAAAATTA 2726 37 100.0 35 ..................................... CAATGCAAATTGACGCAAAAATACATCCCCATGAC 2798 37 100.0 36 ..................................... TGAAACAATAGAACTTCGATTGATTCCCATTCTTCG 2871 37 100.0 37 ..................................... GTGTTTATCAATTGGCTGTAATTTTTATCCGTGACAA 2945 37 100.0 32 ..................................... GATTGATTCTTGAATGAAGGCGATTGATGCGA 3014 37 100.0 35 ..................................... CGCGCCATATTTGATCACCTTAATTCACCATCACT 3086 37 100.0 39 ..................................... AATTTTTAAAATCCTACCACCAGTAAATAAATTACTCTT 3162 37 100.0 34 ..................................... ATCAACGGATGGAGCAAATAAAAAATTATTTTAT 3233 37 100.0 35 ..................................... AAACTGTTTACCAATTCACAACACAAAAAACTCAA 3305 37 100.0 35 ..................................... AATACAAATTTTGCATAACTGTAGACATTGGGATA 3377 37 100.0 34 ..................................... ATCTTGGTAGCAAAGAATCATTATCATTTTTACG 3448 37 100.0 40 ..................................... TCAGGACACAGGAATTCAACCATACCCAAAACACACGCGC 3525 37 100.0 37 ..................................... TTGCTTCTAGAATACAAACAAAATTTACCAGATAAAA 3599 37 100.0 36 ..................................... AAAGAAGGTATTAATATCGATTTTCGAGTAACGGAA 3672 37 100.0 36 ..................................... TGCTGTATCAAGCCCTATAATTATCCGTTCAAACTC 3745 37 100.0 33 ..................................... GCGATTGAAAATAGAGAGGAATTAGAATTAAAA 3815 37 100.0 40 ..................................... ATCTGCTAATCCACAAGCTGAACAACAACAGCGATCGCAA 3892 37 100.0 34 ..................................... ATCTAACATCAAAAATATAGATCGCTATATGGAA 3963 37 100.0 39 ..................................... ACATTAAAAATTCTCTACTTCAGCTAACAACTAATTTAG 4039 37 100.0 34 ..................................... TTACTATGGCGATATTGATGAGAAAAGTAACAGA 4110 37 100.0 50 ..................................... CTCTATTGAATAACCAAACATTTCGACAGCATTGGGTGACAATTACTAAT 4197 37 100.0 34 ..................................... TCGACCTACGCCCAAGGGCGGAGAGAATTACACC 4268 37 100.0 35 ..................................... CCAACCTGTTACAACCCAACCCCAATCCTATCAAG 4340 37 100.0 42 ..................................... GCCAAATACTTCCCGGTTGGTCTGCGTTGATTGCGAGGTCTG 4419 37 100.0 45 ..................................... CTCTCAAGTTGAGGACGCGGTAACTTCCCGCATTATGGCACGGTG 4501 37 86.5 94 G...A......AC.......................A ATTATTTTAACAGTGGTGGTTGTGGTGGCGGTTGCAGTTAAAATTACTCATAATCCTGTAAATCCTAAAATCCTGGACATCCTGATTCAGACAA 4632 37 83.8 0 G...A........A..A.......G...A........ | ========== ====== ====== ====== ===================================== ============================================================================================== ================== 29 37 99.0 39 ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAGCGGCGGACTAAAATTCACAATATCCTCAAGTCTTATGGCCAATGGGTACAGTATAGTATTTTTGAATGTGAATTGACTGATACTCAGTATGCCAAACTGCGATCGCGTCTCCATAAGCTGATCAAGGCTGATACTGACAGCATCCGTTTCTATTTCCTTTGTGCTTGCTGTCACGGTAAGATAGAAAGAATCGGTGGTGAGCAACCCCGCGATCACACTGTTTTCTTTGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTTAGGTGAACAAAAAATGGCTGAAATTATCTCTATACAAGGCTTTCATGATTTTTATCCAACTCACCCACCCGCGCACTTTACACAGCAAGAGTTTCAGCCATTTTACCCCTTGACACAATTTCTGAAATCGACTATTATTATCTCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCCGCCCGCT # Right flank : CCTAAAAATCTCTATTTTTGTTTTCAGAAAACACTCTTAAATACTGTCACCTGTCACCTGTCACCTGTCACCTCAAAAATCCCATTTCCTGTAAACCCTGACGCAACCTTTTAGCCTCTTGCGGATTATCTTTTTCATGGAGAGCGATCGCATATTCAAAAGCTGCCAAACTATTCTTCACATCACCCACTCTCAACAACACCACCCCTAAATTTTGATAAGCTTCCGCATAATCAGGATTTAAAAAAACCGCATGATTATAAGCATCAATCGCCTCAACAAACAAACCCATTGCTTTAAACACCATCCCCAAATTATAATACCCAATCACAAAACTATCATCAATTTTCAAAGCAGTTTCATAAGCATTTTTCGCCCCTGGCAAATCTCCCATCGCTTTCAACAAATTACCCAAATTATTATATCCTCCCAATTTCAACAAAGGATAAATAGGTAATTTAACCGCCGCTTGATAATAAGAAATCGCCAAAGAATAGTTT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 8394-8255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000009.1 Anabaena aphanizomenioides LEGE 00250 NODE_32_length_61046_cov_12.8288_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================ ================== 8393 25 96.0 32 .....C................... ACAATGAGCAATTTTTATTACAGGTTATTTTC 8336 25 100.0 32 ......................... TAAATTATCAATTTTTGTCCAAGGCTATTTTC 8279 25 96.0 0 ..A...................... | ========== ====== ====== ====== ========================= ================================ ================== 3 25 97.3 32 CTGTAAGGGCGAAGCATTCGGGCGA # Left flank : AGTCTCCGATGGTGGGAACTTTTTATCGCGCACCCGCACCAGGTGAAGCGCCATTTGTGGAAGTGGGCGATCGCGTTAAAGTAGGTCAATCAGTCTGCATCATCGAAGCTATGAAACTGATGAACGAAATTGAAGCCGAAGTCTCTGGACAAGTGATGGAAATTCTCGTTCAAAATGGCGAACCTGTAGAATATGGTCAACCTTTAATGCGAATTAATCCAGATTAATTATAGCAGCAGTCAGCAGTCAGCAGTCAGCAGTTAGCAGTTAGCAGTTCCAGAAGTCAAAAGTTCCAGAAGTCAACTGTTCTCAGAGTCAGCAGAAAAACCCTGTTGTAGTCGGAGTTTGATTATCAATTGATGTCCTCAGCACCCTGTTCATTGTTATGTTAACGACTATTTGCGATCGCTGCGCTACAACTTGAAAAGAAGTTGATCAAAATTAGTCAGTTGTCCTTTGTCAGTTCTTTTTGTTCTGGAAAAATCATCAACTACTGACTA # Right flank : TAAATTATCAATTTTTATCACAGGTTATTTTCCGAATGCTTCGCCCCTACTTCGCCCCTATGACTACTGACTAAAGAGGATAATTTTCGTTAAAGCTTTTACGAGTTAGTGGTTGTTCTATTTCCACACCTTCACCACCTAAAACTTCTAATGGCTTACCATTGACTTCAATGTAAACTTTGGCGTTAGGATTTAAACTAGTAGCAGTATAGACAACCTGCCCTACACGGCCAACCATTGAGGCACTACCCCCACCACTGGTAAAATCTTCTGATAAATTAACGTGAACTTCGTTATTGTCAGCTTTCAAACCTAGCAGTTTAGTACCTTGAGGAATAGTTGTTGAGTCTGTTCCTTCTGTTGGACCTGCTAACAAAGTTTCAAAAGCAGCTTCTAAAGCTTGGCTAGGTTGTGCAGCAGCAATTTTTATCGGCTGAGGAACTAATTCAAAGCTTGTTTCCGTTGGTTTGAGCCAATATATATTAGCAGTTTCTTCTTTC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTAAGGGCGAAGCATTCGGGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2147-1252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000272.1 Anabaena aphanizomenioides LEGE 00250 NODE_478_length_4939_cov_19.6941_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 2146 23 100.0 50 ....................... ATGGCACAGCAACTAAAACAAAAGTTAGCACCTTGTGTTTCTGATTACCT 2073 23 100.0 50 ....................... TTAAAAGAGAGAAATCACAGGAGACTTTTCCATTTTGTTTCTGATTACCT 2000 23 100.0 50 ....................... ATGAATTTTGCACATTCATGAAACTTGGTTTCGTCTGTTTCTGATTACCT 1927 23 100.0 49 ....................... TGTAAAATAAGGAATTATTGTGGAACACATTAACAGTTTCTGATTACCT 1855 23 100.0 49 ....................... ATTTTCATCTGAACTTCGGTATTGTATTCCAGTGGGTTTCTGATTACCT 1783 23 100.0 50 ....................... ATTACAACTTGATAAAACAAGACAATGCCAAGCATCGTTTCTGATTACCT 1710 23 100.0 51 ....................... AATACCATCTCCATTGTCGGGTTCAGATGATGTGGTGGTTTCTGATTACCT 1636 23 100.0 48 ....................... AAACCTTTGCTTTTGATTTCAGTTTCTACCCTTGGTTTCTGATTACCT 1565 23 100.0 50 ....................... TTATCTAACTTTTCTAATTTTTCTTTAGTCCAAGAGGTTTCTGATTACCT 1492 23 100.0 50 ....................... TTAAAAGTTACTTACGTAATGTTTGGGGAATTAACTGTTTCTGATTACCT 1419 23 100.0 49 ....................... ATCTCCTTTGAGCAGGAGACATTGTAGTTCTATCAGTTTCTGATTACCT 1347 23 100.0 50 ....................... AGTTAGCTCGTATTGAGCTAAACCAAAACTTCCTTTGTTTCTGATTACCT 1274 23 95.7 0 ......................G | ========== ====== ====== ====== ======================= =================================================== ================== 13 23 99.7 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTCTGGTATGCAAGGTTAAGACCAGTTTCTGATTACCTAATCCCCGCAAGGGGACTGAAACGCTCGTTTGTAGGGTCTTTTACCCACACACTGCGGCTGGTTTCTGATTACCTAATCCCCGCAAGGGGACTGAAACATAGGTTTTGTGAGTGCATTACCAGCAATGCCTCCAACTATCGTTCCACCAAGAACATGATTTCTGAGGTTAGCTCTTTTCTTTCTTGGCGCTTTGTCTTTACCCCTACCAAATTCAGCTAAAATAGTATTTAGTGATTTCATGATAAAAAATGGATGTTGTTGTAAATTTTATTTCAGATTTTTTTCACGCTTACTGGTTTTGTATTCTGTGGGGTGCAGGATTTGGATGGATAGCTTTTAAATATTCAGAAGAAAGTAAACCAGAAACCAAAATTGGTATTAGGAAAAAAGTTTTCTCTTTTTCCAAGAGCGTTTTGAAAAACAGGCGTAACGCCCCAAGCGACTAAGGTTTCTGATTACCT # Right flank : TATATTGAATCTGCTTGTTAGCGATCGCCAAGACTGACTAATAGAAAACTATTTCTGGTAAGGATTCTGAGGTTTTTGTTTACATAACTTTACAACGTGTCCCATTTTGCAGGTATCCCGGCTGTACCCCCATAAACAATAACAGAAGTCAAAGACAAGAAAATATTTGTAATAAAATCCTCAAAGACAGGAAAAGCCGACAGAGTAAGGGTTAGAGAAAACCTTACAAAAACCTTTAGATATTTTTGATGCCTAGACAAACACTGAATCACGCTATTAAGATTTATCTATAGGCTACACAGAGACATCACTAATGACAGCAGAATATTGGCGGGATAAAATCTGGGGGTTACTGCATGACCCTGTATTAAAGTTAACTAATAATCTGTGATAGCACAATCAGCAATGTAGTAAGCCGTTTGAACACCATTATCAATCTAGCCAAAATAAAACTATATGACTGCCAAATCCTTAAACTTTGCCCATAAATCAGACCGTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3419-2511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000272.1 Anabaena aphanizomenioides LEGE 00250 NODE_478_length_4939_cov_19.6941_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 3418 23 100.0 50 ....................... AGGCAGCAATTTCTGATTCTATAGAAGTACAGCTTGGTTTCTGATTACCT 3345 23 100.0 49 ....................... GACTGCGATCTTGCGATCATGATCCACCAACCAAAGTTTCTGATTACCT 3273 23 100.0 52 ....................... AAGCCTGTGTTGGGCAGTAACGATAATCCACCGTTTTAGTTTCTGATTACCT 3198 23 100.0 50 ....................... TGGTACTGGATACCATGGGATTTAAGCAATAATTTAGTTTCTGATTACCT 3125 23 100.0 51 ....................... CTTGAATCTCTGACTGCCTGAGAATACAGCAGGGAAAGTTTCTGATTACCT 3051 23 100.0 48 ....................... AAATATAGTTACTGCGACTTAATTTGGAATCGAGGTTTCTGATTACCT 2980 23 100.0 50 ....................... CGTTTTTAAGCATGATATCCTTGAAGTTATATTGTTGTTTCTGATTACCT 2907 23 100.0 49 ....................... CTATTCAGCCCTTAACAGTGGGTACTATAGTTAGCGTTTCTGATTACCT 2835 23 100.0 58 ....................... TACCCAAACCCCCTACCAACTCTAACAAGAGATTGGGTACTAGGGTTTCTGATTACCT 2754 23 100.0 49 ....................... TTGATACCATGTCCGACAACATATAGTTTAGCCATGTTTCTGATTACCT 2682 23 100.0 51 ....................... ACACTCATAACCCTTCTGGTATGCAAGGTTAAGACCAGTTTCTGATTACCT 2608 23 100.0 52 ....................... GCTCGTTTGTAGGGTCTTTTACCCACACACTGCGGCTGGTTTCTGATTACCT 2533 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================== ================== 13 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TTTAGCGGATAAACTGCATAATGCTAGGTCTTTACTAGCAGATTGGCAACAAAGGGGAGATATAATTTGGCATCACTTTAGTTGTGGTAAGGAGAAAACTTTGTGGTTTTACCAATCATTGCTGGAGGTTTATCAACAGACTGGTTCTGATGTGATGACACAAGAATTAGAACGAGTGATCAAAGAACTATTTGAGTAATAATCTGTTTGAAATTGTAAATTTCAGCTTGATAATTCTTAACCGAATTTAGCTTGACAGGTAAAGCAACCAATTTTACCCTTAAATAAGGATAAATTTGGCAAACCGAAGCGGGGGCAAAAACCCCAGGGGGTCCGCCAAATCGACAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCGGTTCACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAATTCGTCTCTAGACTCCGGTTCTAGACTATGTTTCAAAGCGCCGGGGTTTCTGATTACCT # Right flank : ATAGGTTTTGTGAGTGCATTACCAGCAATGCCTCCAACTATCGTTCCACCAAGAACATGATTTCTGAGGTTAGCTCTTTTCTTTCTTGGCGCTTTGTCTTTACCCCTACCAAATTCAGCTAAAATAGTATTTAGTGATTTCATGATAAAAAATGGATGTTGTTGTAAATTTTATTTCAGATTTTTTTCACGCTTACTGGTTTTGTATTCTGTGGGGTGCAGGATTTGGATGGATAGCTTTTAAATATTCAGAAGAAAGTAAACCAGAAACCAAAATTGGTATTAGGAAAAAAGTTTTCTCTTTTTCCAAGAGCGTTTTGAAAAACAGGCGTAACGCCCCAAGCGACTAAGGTTTCTGATTACCTAATCCCCGCAAGGGGACTGAAACATGGCACAGCAACTAAAACAAAAGTTAGCACCTTGTGTTTCTGATTACCTAATCCCCGCAAGGGGACTGAAACTTAAAAGAGAGAAATCACAGGAGACTTTTCCATTTTGTTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30562-29213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000020.1 Anabaena aphanizomenioides LEGE 00250 NODE_51_length_50063_cov_12.6992_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 30561 37 100.0 41 ..................................... AAAGAAGGCTCATTTTCCTGATTTAGTAGCATCTCAGCTAC 30483 37 100.0 38 ..................................... AACAATAACATGAAAGAGACTGAAGTTCAAGCTGTCTC 30408 37 100.0 41 ..................................... TTTGGAAAGACTTCTCTTCTATCATACTACGAAAGCTCCAT 30330 37 100.0 50 ..................................... GCCGCAAACCGCTCCATAGCGGACACCACACTTTCTGGAATCTCATCAGA 30243 37 100.0 50 ..................................... TTCGATAGATAATTGGTGTAAAGACATGGTTTGAAACCCTTTAAAAGAAT 30156 37 100.0 44 ..................................... TCAGGGTTTTTAACCCCAATGTTTTCCTCAGTCCATTGGGCAAA 30075 37 100.0 39 ..................................... ATGGTCTGTATCAAACTGACTATCCCCGGCATGAATATA 29999 37 100.0 41 ..................................... TCAACCGCAGTCATCTGAACTTCACCGGGAATGTAATTGAC 29921 37 100.0 37 ..................................... GTTTCTTTGAAAACTGGATTCTCGACAATAGCTCTTA 29847 37 100.0 35 ..................................... GTTACTTTCGTTAGTAGCGATATGTGTTAGGGTGT 29775 37 100.0 42 ..................................... TTGACCGAATGTTAAGCTAACTTTTTGGGTTGTTGTTAATGT 29696 37 100.0 38 ..................................... CCACCAACAAGAACGTAATCCTCAAAGCCAGCATCTAA 29621 37 100.0 40 ..................................... AACTCGGTGACAGTCGCTATTGCATATTTAGCCCACGCAG 29544 37 100.0 42 ..................................... TTTCATGAGATTGCCCTCCTATCAGGCAGTAAATTAAAGTGT 29465 37 100.0 39 ..................................... CAGCAGACAGTTCCAGACAGGTGTCTGTAAGAGTCATCA 29389 37 94.6 39 ....................A....A........... CAGCAGACAGTTCCAGACAGGTGTCTGTAAGGGTCATCA 29313 37 94.6 27 ...................G..T.............. TTGGCAAAGTCTTGATTCTGCTCAGAA Deletion [29250] 29249 37 81.1 0 ........C........A...AG...A.C...A.... | ========== ====== ====== ====== ===================================== ================================================== ================== 18 37 98.3 40 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : GAAAAAGCAGAGTTAACATTATTTGATCCTGAAAAAATCTGGAGAGTTAGTCGAGAAAGTCTTTATTCACAAGCTGATAATACACCTTGGTTTGGCAAAGATATTAAAGGTAGAGTTTTACAAACTTGGTGTTAATAGGGAACTACCAGATTATTTACTTTTGTAAAGTTTGATATTTCGACTTATGGGGGTATGAAGAGGGTTGAAATACCCTTATCTTATGGTTTTGGGGATTTGTAACGAAATGTAAAGCAATGTATTACTTTTGTCGCTAAGAGCTAGAAAGACCTATATTCAGCAATCTTGGGTAATTTGCAAAAAATATTAGTTTTTTGGGTTGACATCTTAGAGTTTTTGTTTTATAGTGTATTTATTGGCTGGAAACAGCAAACAGCACCTTGAAAATTAAATACTGATTAACCTTGTTACATTACCGTTTCCGTAGCTTGGCGCAAACGCCTTTTGAAAGCTAACTGTATCAAGGTCTCGATGACCATAGG # Right flank : AAACCCCCGATCGCAACAATTAAAACAAATGCGATCGCGCTATTTTCCATAATTCCCAGCAAGGGGCTAAATATATTACAAATACGGGATTTCTTAAAGAAACCCCATATCTATCAGTAGTTATAAACTTGCAAATTTAAGTTAATTCTAACCATCCTTGATAACCGGTCACAATGCGATCGCCATCTTTGAGAATATGAACTTCTATTTGATCACTCGCCCAACTAATTTGATCTTTAAATTCTGGGTTAAAAACATGAACTTTTTGATTTCTGGAAGAAACCGGAGACAAAGGAGAATTAATAGCTAAAGACTTGACAAAAGGACCATCTATTAAAATATCTAATTCTGCTAATAATTCCTGAGAACCAGGAGGTGCAGATTCAGATTGTAATTCTTTTAAAGTAAAACCAGTAAAAGCCATCACATTTAAACCAGCGGCTTTAACTTTATGTGCTAAACTAGCTAATGCGGAAGCTTGCCAAAATGGTTCTCCACCA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 19129-17759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000028.1 Anabaena aphanizomenioides LEGE 00250 NODE_66_length_36275_cov_12.9669_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 19128 37 100.0 40 ..................................... AACTTCACCCTATCCCCCTTCTTAGCCAGCACCATGTACT 19051 37 100.0 36 ..................................... ATGCCTATCATTTCGGTCCATTATTCGAGGCACTTC 18978 37 100.0 47 ..................................... TTGGTGACTCAATAGGTTATCTGCTTTACCTGTTCTCACTCATCTAC 18894 37 100.0 50 ..................................... TTGTCAGGACAAGACCTAAGTCTTGCACCGGATTTTAATTGCTCAATAAT 18807 37 100.0 44 ..................................... AATGTAGTTGTAACTGCGTCTGGTGGCAGAGCCTGAATTAAAAC 18726 37 100.0 37 ..................................... CTCTTAAATAAGATAAATCGCCTTCAGTTGCAGCGCG 18652 37 100.0 36 ..................................... CCAGTAATTCATCTTGCCAATCAACCAGTTCCTCTA 18579 37 100.0 38 ..................................... GAAATAGCTTGTTAAACAACTCCGGGTCTGTCTCATAG 18504 37 100.0 44 ..................................... ATCGTACCGCACCCCCTCAAACTCAATTACCGGAACGGTTATAG 18423 37 100.0 35 ..................................... TTAGCTGCTGCTAAAAGAGGTGAAGATGTTAGCAA 18351 37 100.0 39 ..................................... TTCGGGTTCAAAGATGAATTGGCCTTGAGGATTCAATGC 18275 37 100.0 44 ..................................... ATTATGGCTCTAGCCATGTTCACCCTATTAGGATCTTTTGGGTG 18194 37 100.0 38 ..................................... TCTGCTTGTCCTACAACCTTAGCAACTTCAGTCTCCAG 18119 37 100.0 44 ..................................... TTTTCTTAGAATTGAATTTTTGAAAGCTTGTTTTTTATCTAACA 18038 37 100.0 42 ..................................... TGGGGACCAGCACAAAGCTGGTGTAAAAAAACAACGTTACAA 17959 37 100.0 51 ..................................... TTAGTGTCCAGTAGTCAATACTACTGACATCATTTGAAAAAACAACTTCTA 17871 37 100.0 39 ..................................... GTCTTGGGGATTATCTCCCCGTTTGATGGGCCCCCAAAT 17795 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 18 37 100.0 41 GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Left flank : AGATAATGAGGAATTGAATCACCAGTTAGAAAAGCGGTGGTTAAAGGTGCTGAAGTTGAGTGAGGATAATTTGCGGGTTTATCCTCTGGATGAAACTGCTAAACAGAAGACGCGGGTTTACGGAAGTGAACCTCCTTATGAACCACCGGATTATTTAATTTTGTAAAGTTTGATATTCCTGGTTATGGGGGTATGTAGGTGGTCGAAATATCCCCAGAGTCAGCTTTTGGGCGTTTGTAACAAAATGTAAAGGAATGTATTGGTTTTGGCGCAGGAAGCTAGAAAGATTTACATTTAGTAATCTTTGGTAATTTTCAAAAAATGTTGGTTTTTTGGGTTGACATCTGGAAGTTTTTGTTTTATTCTGTATTTATTGGCTGGAAACAGCAATCTGTACCTTGAAAATTAAATACTGACTTCGCTTGTTACATTGTTGTTTCCGTAGCTTGGCGCAAACGCCCCTTGAAAGCTATTTGTAACAAGGTCTCCATGAGTGTAGG # Right flank : AAAACTTGGGGATAAAAAAAGATAGAATTACTAAAAAATGCGATCGCTTGGTTGTAATAAATTAGGACTTACGCAAGATGTGACTGAAAACCTTATTCTTGCGTAGGGGTAATTCATGAATTACCCCTACTTTCGTTCCCTGTTGCGTAAGTCCTGCGTAATTTAATCAGCTTTTGCAGTGCCAATACAAAAAATTGAACTTGCCAAAATAGACAATAAACAATAGACATCTCCAGGAAAGAAATTCTGGAACTTATTTATGGGGGCAGGGCGAAGCTTATGGGATATCTAGATGTCTGATTTTTTCGATAAATTATGGACCTGTAAGGGCGAAGCATTCGGAAAATATCCTTTGGTGAATACCGATCATTAATCGCTCGAATGCTTCGCCCCTACTTCGCCCCTACAACTTATGACAAATTAATACATTCTATTGTGGAGATGTCTAATAAACAATGTACAATTGAAAATTATACTTACTGCAATTGGTTTTTTTGTCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCAATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 27388-31754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000036.1 Anabaena aphanizomenioides LEGE 00250 NODE_76_length_32297_cov_13.5141_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 27388 23 100.0 49 ....................... ATAAGACGAGCATACCATTGCCCCCCTTCTTCATAGTTTCTAATTACCT 27460 23 100.0 48 ....................... CCCATAATTTGCCCAGCAGGCGAGAGAACTTGAGGTTTCTAATTACCT 27531 23 100.0 49 ....................... TTTAAACCTTTCGTGAAAGCTTGGCTTTAGCTTTAGTTTCTAATTACCT 27603 23 100.0 49 ....................... CTTAAAAATAAATCTTTTTCTGGTATTTTAACTGCGTTTCTAATTACCT 27675 23 100.0 49 ....................... GATATATTCATATAGCCCGACTGATTTGGAAACATGTTTCTAATTACCT 27747 23 100.0 47 ....................... ATTTGCATTTCTATAGGCGGGATAATTTCTATAGTTTCTAATTACCT 27817 23 100.0 50 ....................... CATCCAAACAACTTAATAAAAATCCATACTCGTCCTGTTTCTAATTACCT 27890 23 100.0 50 ....................... TCATTACCGTAACTTCAGGGAAGAATTGCAGGATAAGTTTCTAATTACCT 27963 23 100.0 50 ....................... TTGATATTATGTCCCCCAGATGTTAATGAATTGTTGGTTTCTAATTACCT 28036 23 100.0 49 ....................... CAACCTGAGCAGGACGGATATTTGAAAATACTTAGGTTTCTAATTACCT 28108 23 100.0 48 ....................... ATACTACTACAAATGTATCTAAATCATAGCTATCGTTTCTAATTACCT 28179 23 100.0 49 ....................... CTAAAAAATAAAGGAATGTTGCCAGAATCATCTGAGTTTCTAATTACCT 28251 23 100.0 50 ....................... ATTTTATAGTTTTTAAACTCAAACGGAAACTCTGGGGTTTCTAATTACCT 28324 23 100.0 49 ....................... GACATTTATATAATCTAAGTCCAATGCTATCACAAGTTTCTAATTACCT 28396 23 100.0 49 ....................... TTGATGTTTATGAACGTCATCAAAAACTGGGTGGTGTTTCTAATTACCT 28468 23 100.0 53 ....................... CTCCCATTCTTTCTGCTGAGAATATAGATGTAAGCACAGGTTTCTAATTACCT 28544 23 100.0 50 ....................... CAACGTCATTGATAATTGTTTCCGTGCAAAAGTGCTGTTTCTAATTACCT 28617 23 100.0 49 ....................... CTTATCCTGGCGCTTTTTTTGGAGGTGTGCTGTTGGTTTCTAATTACCT 28689 23 100.0 49 ....................... GTAAGCTATATCTTCTAAATTTCCCCGCTCAAATGGTTTCTAATTACCT 28761 23 100.0 53 ....................... AATTATTTTCATCTGCTTATGATGAAATTTTAATTGAGGGTTTCTAATTACCT 28837 23 100.0 57 ....................... ATTAAGAACTAATTTTTTTTTATATTTCTCAACAAGATGCAAAGTTTCTAATTACCT 28917 23 100.0 54 ....................... ATTCAATTATTTCTGATTTTAAGTTAAGAAAATCTTTTGGGTTTCTAATTACCT 28994 23 100.0 46 ....................... GCAGATACTGTTCATTGTTTTATAAATCAAAAGTTTCTAATTACCT 29063 23 100.0 49 ....................... TAAGGACTTGCAGCGTTGCCTCGAAAAATGCGAGAGTTTCTAATTACCT 29135 23 100.0 54 ....................... AGTATATCTTTACTGCTCGTTGCACACCCTCTAATTGTGTGTTTCTAATTACCT 29212 23 100.0 49 ....................... GCATTATCACGTTGCTGTTGAGTCAATTGCTCCCAGTTTCTAATTACCT 29284 23 100.0 50 ....................... GTTACCGCCGTGGTTACTTGAGCGGGAGCAGTATTAGTTTCTAATTACCT 29357 23 100.0 55 ....................... AACGAAGGAGGATAAAAAGAAGGAGTAGGAGATTCAATAAAGTTTCTAATTACCT 29435 23 100.0 54 ....................... TCATTACATTAATAATATGCCGTTTTTGGGGGAAGAATTAGTTTCTAATTACCT 29512 23 100.0 49 ....................... ATGAAACTGAAAGTTATAGGAAAATCATCACTACGGTTTCTAATTACCT 29584 23 100.0 51 ....................... ATGATATTAATTGCCCCTCTTCTTTTAATAAGCCTAAGTTTCTAATTACCT 29658 23 100.0 48 ....................... TAATCATCGCGGCTCCTGCGGTGGTTGCTTTATTGTTTCTAATTACCT 29729 23 100.0 52 ....................... GTTTGACTGCTTTCTGTTTATTAAGGTGGAAGTCCTAAGTTTCTAATTACCT 29804 23 100.0 51 ....................... TCATCAAATTCAGCTTCAGCCTCTACGGATTGCTGTGGTTTCTAATTACCT 29878 23 100.0 50 ....................... TCTAACTCTCTACAGAAGAAGTTAAACAAACCTGTTGTTTCTAATTACCT 29951 23 100.0 54 ....................... TAGTTATTGAAGTCTGATTCCCCAGAAGGATACGGCGAAGGTTTCTAATTACCT 30028 23 100.0 49 ....................... AAGACACCAGAACACTAATACCTTCTCCTAAGTTGGTTTCTAATTACCT 30100 23 100.0 51 ....................... AAGCGAGAAGAAAAGCACAACAGAGAATAAATAGACAGTTTCTAATTACCT 30174 23 100.0 50 ....................... TAGCACCCTTAGAAGCTTTTAGAGTTAGAGAGACAAGTTTCTAATTACCT 30247 23 100.0 51 ....................... CAAACATAGCTCAAATAATGCCTTTTTACCCTCCATAGTTTCTAATTACCT 30321 23 100.0 54 ....................... AGGCTTCATGCCTACCCCGCTTGGCAATAGTCGCCTAATTGTTTCTAATTACCT 30398 23 100.0 54 ....................... AAAACTTAGAGATACCTGATATTATCAATTTATCGCCTGAGTTTCTAATTACCT 30475 23 100.0 54 ....................... TTTAATGTTTGTTCATGTTCACGTTTTAAAACAACAACAAGTTTCTAATTACCT 30552 23 100.0 49 ....................... GAGTAAAGGTTTGGTGGTTGTGCCATAATCTTGTAGTTTCTAATTACCT 30624 23 100.0 51 ....................... CGCTTTCCACCAAATCTGATGGTTGTTTAAACCGCCGGTTTCTAATTACCT 30698 23 100.0 54 ....................... TTGCCAATCACTGAATAAAATATCATCTACTATCACCTATGTTTCTAATTACCT 30775 23 100.0 50 ....................... CTTCCACCTCGTTTTCTGTGGGATAGACCCCGTTTTGTTTCTAATTACCT 30848 23 100.0 48 ....................... GCGAACTATTTAACCAAACATATTCAACTAACAAGTTTCTAATTACCT 30919 23 100.0 50 ....................... TTTTTCCCCAAGGTTTTCTTCGGTCCAAGCCGCGAAGTTTCTAATTACCT 30992 23 100.0 52 ....................... CGCAATTTAATCCTAATCAACACCTTCCTAGTCTTTGCGTTTCTAATTACCT 31067 23 100.0 48 ....................... AAAGCAGAAGATTACGACCCCCATAACCCTAATCGTTTCTAATTACCT 31138 23 100.0 54 ....................... AAAAACTCAGATCCTATAATTGCATTACATAGCAATTCAAGTTTCTAATTACCT 31215 23 100.0 54 ....................... GCGCGATCGCTCTTGTGATTTTTCTTGTTGTTCGCCCTGGGTTTCTAATTACCT 31292 23 100.0 48 ....................... CTATTCAATAAATCCATATCGGCTTTAAAAATCTGTTTCTAATTACCT 31363 23 100.0 50 ....................... TCGAGTTCTTTTGTGTTGTATCCTGATAGAGTGATCGTTTCTAATTACCT 31436 23 100.0 51 ....................... GCAGATGGTAAGCGGTTGGCAGTGTTCCGTTTATAGAGTTTCTAATTACCT 31510 23 100.0 49 ....................... TAGCATCAAAGAAAAAAGCAGCTATAGCCGAATGGGTTTCTAATTACCT 31582 23 100.0 50 ....................... TTTTCCTAGCAATGTTTCGTAAATAATTCGACTTTGGTTTCTAATTACCT 31655 23 100.0 54 ....................... GAGATTTATCTAAAGTCTCAAAAGCCTTAAAAATGCTAGGGTTTCTAATTACCT 31732 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 60 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCATAATTTACGACTTACCAGATAGCAAAGCTGCTAACAAACGCAGGACAAGATTACATAAAATGTTGGGTGGTTACGGAAAATGGACTCAATATAGTGTGTTTGAATGTTTTTTGACTGCGGTGCAGTTTGCGACACTGCAAACCAAGATAGAACGATTGATTAAATCTGAAGAGGATTCGATTAGAATTTATGTACTAGATGCTGGGAGTGTGAAAAAAACTATCACTTATGGTTCGGAAACCCCTAGACAAGAGCAAGCGATAATCATATAATTGATATATCAGCTTGAATTTTTGGCAAACCTAGAGCGGGGGCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCCAGCGTTTCATCAGTTTCAGTTGGCGGTTAACCCGAAGCCTGAAATGAGGTTTTTTCAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : CATATAAAACACAGGAGGCGATCGCACGGAAAAAATAGCTACAACTTGGGCAACAATATTAGCAAGAAGCGAAATGGGAGAATCATTACAAATCATAGCTCAAGATTTAGAAATACCATACACCACAGTTAAAACTTATGTTAAATTAGCACGACGGGCGCTGAAAGATAACCAGAGCAATATTTAAACATGATTATGTATTTGGTGAAATTAGCGATCGCTTTTTCCAATATGTGAATTATATTAAATTAGCGATCGCCAAAAAAGATTAAATATTAAATATTAAATATTAAATATTAAATAGGGTTTGCTGAATAAACCTAAAACCTTGATATATCAAAGGTTAGAGGCTGATAAACACAGAAATTAGTGCAAGGGTTTTGAAGGGTATACCGGAAAAAGTGTGCATTTTTTGGTATTTCAAGAGATGGCAAAGAAATTTTCAAATCTTCTCCTGACTCCTGACTCCTGACTCCTGACTCCTGACTCCTGACTCCTGA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5254-5501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000042.1 Anabaena aphanizomenioides LEGE 00250 NODE_83_length_31330_cov_12.7561_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 5254 23 95.7 54 T...................... TACTCGTCATCAGCTTTAATTTTTAAAGCGTTACCAATTTCCTTTCCAAACCGA 5331 23 95.7 50 T...................... ATTTTTTCGTTATAGTCAAAAGCAAGGCCTTCCTTGTCTTTACAAATCAA 5404 23 100.0 52 ....................... TCTGTCTCCTTGGTCGTATGCCAAATGCCGTGACTCTTACTTTACAAATCAA 5479 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ====================================================== ================== 4 23 97.8 52 CTTCCCCGCAAGGGGATGGAAAC # Left flank : AAAAATATCTTGATTTGTAGGTTGGGTTGAGGAACGAAACCCAACAAATACGTTGAGTTTACAGCAGTTTTCATGTATTTGTACCACATCCTTCTTGTTATCTTCCTTTCTTCCTTTGCGCCTTTGCGTCTTTGCGTGAGATTAAAAAATGTGGTTCATTTACCTGAAAATCGCTGTAAGTTGGGTTTCACTTCGTTCAACCCAACCTACGGGAAAATGGCAAAGGTATTGTCATCTGTCAAAAACTTGACATTTATGGCGATGTGTTGTATATATGAAAAGTGTATCAAGAACATCGACACACATCCCCCGAACCTTGAAAACCTAATAAATTCGTTGACCTGTGTCGATTGCTTTTGTAGCAAGGCTTTTGACTCTTGAATGAGTCAGTTTTTTCTCAACAAGCACTGATTTTTTCTCAATAAAAAAAGGTGTGTCGATTGGGGTATGTAAAACCCTTGTTCAGTAAGGTTTCCATAAGTGAACTCTTTACAAACCGA # Right flank : CAATTATTTACCAAAACCTAAACCAAAGCTTTGAGTAATGCTTGCAGTTTAAGCTGCACTTCAGCAAATTCTTTTTCAGGATCAGAACCGGCGACAATACCAGCACCTGCATAAAGTCTAGCGCGATCGCCATCAATTAAAGCTGAACGAATACCGACAATAAACTCACAATTTCCCTTTGCATCTACCCATCCCAAAGGTGCAGCATATAAACCCCTTTCAAATTTTTCATAACAGCGAATTTCTGCACAAGCAATATCTCTATCTGCACCGGCAACCGCTGGTGTAGGATGTAATTGGGCAACGATTTTTAAAGGGTGGACGTTAGCAGGTACTACCGCAGTAATGGGTGTCCATAAATGTTGAATATTAGATAATTGTCGCAGACGAGGGGCTAAAATTTGCGGAAATAAACCGAGTTGTGATAACCGTTGGGTGATAAAATCAATTACTAGGTTGTGTTCGTGTTTTTCTTTGGTACTATTAACTAAGTTGTTGGC # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.60, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11889-14227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000090.1 Anabaena aphanizomenioides LEGE 00250 NODE_140_length_18888_cov_11.8758_(reversed), whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 11889 36 100.0 36 .................................... ATCCGCATTTATTACCCCAGAAGGTATTGACGAATG 11961 36 100.0 36 .................................... AAGAAACGACTATAATTTCGGGGCTTGGCATATAAG 12033 36 100.0 43 .................................... GTGAAATTGGTTTGAACTGGGCTGCTCAAACTTCTATCAGTAG 12112 36 100.0 36 .................................... ACTTACAAATCTTAGATGCCTTACTTGGTTTATATG 12184 36 100.0 35 .................................... ACCAACATCTGAAACATCCAGGCTAGATGGATATA 12255 36 100.0 40 .................................... TTGAACGTAAACATTCCATCTACGGAGAAAGCTCCGCAAA 12331 36 100.0 34 .................................... ACTACACTATCTATTAGACTTTGGTTTTTAAACA 12401 36 100.0 36 .................................... AATACTTTATCAAACTGTTTCCAGAAGTTGATAAAG 12473 36 100.0 42 .................................... ATTCAATGCTATGGGTTGCCTGGTGAGATTAGCCTGGATTGG 12551 36 100.0 41 .................................... GTCTTTTTCCGTAGAAGTGATTGAAGGTGACGTTTATATAT 12628 36 100.0 36 .................................... GACGATTCTGTGCAAGAAATGCGGGCATGAAGAGTA 12700 36 100.0 35 .................................... TGTCTATTAAACCTGAGTTCAGTCTGAAACAAGTC 12771 36 100.0 41 .................................... TCGCATCTTCTGGACTAAAAACGCTGTCTACAGAAGATATG 12848 36 100.0 44 .................................... TGGTAGGTTTTGTCTACTCTATCGGTTATTACGACAGAGACGGT 12928 36 100.0 46 .................................... CTGTAACTAACCTTATCTGATTTGAAAAGAGCCCAAGCCCTCGCGA 13010 36 100.0 40 .................................... GTTTTTTATGGGACAAACCAGAAGACAGTTCCCTGCATTA 13086 36 100.0 35 .................................... ACTAAATGCGAAAGTCGGCACAGTTTACCACTGGT 13157 36 100.0 38 .................................... TTAGAATTTTTGGGGCTAGGGCAATCGAAAGAGCCTTT 13231 36 100.0 43 .................................... TTAATTTAGTAGAGTTCATTCTCCCTCATGGAGATGGGATTTA 13310 36 100.0 36 .................................... ACATTCGGTTGTTGTTGCCAGACTGGAAAGTTTTGG 13382 36 100.0 36 .................................... CTGGTAGAAGCAAAGCAGACAATCAAAGGACAGGGC 13454 36 100.0 39 .................................... ACCTCCATAACTTTTCTTCCCCAGTTCAAATTTTGGAAT 13529 36 100.0 34 .................................... GATTCGTGGTGGACTTTGTAGCTTAACGGTAAAG 13599 36 100.0 36 .................................... GTAAAGTGTATATTGCAGAGACTCCCCTCTCATGTT 13671 36 100.0 43 .................................... AACCTCTGCTTCTATCTGACCTTTCTCATCACCTAATTCTGGG 13750 36 100.0 39 .................................... ATCCGCTACAACTGTGCCGAACGCCAATCTCGATTCAGG 13825 36 100.0 43 .................................... GATTTGCGAAGTCTGATGATATCCGTAGAAAAGCTAATGCAGC 13904 36 100.0 37 .................................... CTACAAGCTGGGTATTGGCGGAGTAGAAACCGACCAA 13977 36 100.0 36 .................................... GTATCAGTTCATGCCCCAGGGGTAATCAAAAGGCAG 14049 36 100.0 33 .................................... CAACGCTGATCAGCTTGTGCTGGTGGCAACCAA 14118 36 100.0 38 .................................... GATTCTTATGTTGATTTAAGAATCGTTGACCTAGATAA 14192 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 32 36 100.0 38 GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Left flank : TAAAAAAGAACGTTCTCAGGTTTTGATCACCATTGAACTTTGGTTTAATGATAGTATGTTTAACTTTGTCGCTGAAGGAACTAAACGTTTTCCTTCCTCACAAATGAAAATGTCATTACCCACTACAGCTAAAAAATTGAATCTACCGAAATCTATTTTTTGTCTTAAACAGACAAGAGATCCTAAATTTCCCCATCGCTTTCAAGTTATGTTACCTAAATGGTGTGTAGATGATATAGAATTACTACGCTGGATTCTCGGTTTTAAAGGTGGGGTAAAAGTAGTAAAACCAGAATTATTAGTCAATAAAATTAAACAAATTGGCGAAGATATTGTTAATATCTATAAATAGGAGTCAGGAGTCGTAGTTTTGTTTACATCTCCTGTAACAACATACTCGCAATTTTCTCGTGATTCAATGCTTCTCATGCGAATGAGGAAAATCTTCATTTAAGCAGTAGATCCCGGACTTCTCAAAGAAGTCCGGGATCTGATAGTGG # Right flank : TAGCCACCATTATAAACCCTTACCCTGCCTACTGTCTAGAGGCAATTTTCGGCCGGGTCTAAAAAAAGAGTCAACCAGCACCATAAACCATGATGTTAAAACACCTGAAACCCTTACCCAGCAAAGGATCGGCAGGGTCAACGAAAGAATCAACATTTGCACCCCCTCCCCTACCCGGCCGCAAAAAAACCATTACTAACAAAAAAATTCCTTATTCGCATGAAACCCCCTTACATTACCTGGCAATTAGGTCTATTTTAAAAAAGTCATCAACTCACAAAAAATATGTACATTTCTCATCGTGCGGCTTTAGTCAGAAATTTAGGAGTCGCTATATTTAATGGGTCAATTACACTCATAATCCTATTAATTGCCCCATTAGGATTAGCAGCAGTTATTGTCAATACATTATTAGTTACCTTAGCTAGTTTTATAAATGCTACAGCATCTGATAAAATTGTGGTTTTTTTACAACCAACTCACATCAAAAATATGATAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTTCTTGTTAAGGAAGCGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.10,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 16038-15074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000092.1 Anabaena aphanizomenioides LEGE 00250 NODE_143_length_18484_cov_20.0916_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 16037 37 100.0 32 ..................................... AGAGCATTCTGCTATGCAGCTTCATTAATTTC 15968 37 100.0 35 ..................................... CTATTATTTCTGCGGATAATTCCCGTGATTTTTTA 15896 37 100.0 40 ..................................... GGGCGATTGAAGAAACTGCCTCTGCTGTAGCTCCCCAATC 15819 37 100.0 32 ..................................... CTTCAGTCATTTTCATTTCTTCTGAAGGTAAA 15750 37 100.0 33 ..................................... ATATGGACACACGACTGGAGTAATGGCGGAAAC 15680 37 100.0 33 ..................................... CAGAATTAATTTCTTTCCAAGAGAAAAAATAAT 15610 37 100.0 34 ..................................... CTTCCTGCTCTGCTGCTGCTGCTGTTGCTGCCTT 15539 37 100.0 33 ..................................... GTAATTGACCTTTGGGCTGATGCTCCCATTGCT 15469 37 100.0 35 ..................................... ATAGACGTTGCCAGTAGCAAATCAAGGCAAATAAA 15397 37 100.0 35 ..................................... CACCAAAGCTGACGGTAGAGGATGCCGACTTTATG 15325 37 100.0 35 ..................................... CTTATCATTGCATAGCCATCACCCGTAATCTGTAA 15253 37 100.0 33 ..................................... GCCAGAGCTTTTGATAGAGCTTTTGATTATAGC 15183 37 100.0 36 ..................................... CCCCTTATTTTCTGACTCCAGAACAGCAAAAAGTAG 15110 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 100.0 34 GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Left flank : CTGGTTGTGTGAATGAACGGGATTTAGCTTTATTTTGGCAAGCTTTGATTAATGCTTGGGAGTTTGATCGTTCTTCAGCACGGGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTACTCATGCCAGTAAATATGGTAATGCTCCCGTTCATGAGTTATTTGATAAACTGCAAATTAAGTCTAATGTTGATGTACCCCGCAGTTTTGCTGATTATCAGGTTGACTTGGATGAGGTGTTACCTGATGGTGTGACTTTGACAAAGTTGGCTTGAAAATGCGCGGATGGGTGGGTGTTAAGTCGGAGTGATTATGACTAAGCTGGAAACTCTTACACTGTCTAGTTTTTATCCGTTGGGTGTTCTCAACCACCCGCGCACCTTACGCTGTAAGGGTTTCGGCGTTTTTCGCTCTTGTGCTATTCTCTGGGATCGGGTATTATTTTGGCATCCGCGCAAATCGTTGTGGAAATGTCTTATTTCTAAGGGTTTGCGCGATCGGCT # Right flank : ATTAAGGATTGAAACTAAACTAAAAGATAATGATTTTCACAATAAGAAACTACACAGTAATTGCAGATTGACATGACAAAAACCCATACCACTCATCTAAACCCACACCAGTAATAGCAGAAACCTGAAAAATTTGTATTTTTGGGTTTACCTGTTTTGCATATTCAATACATTTTTCTACATCAAACTGCAAATAGGGTAACAAATCAATTTTTGTAATAATCATAATGTCACTAGCGCGGAAAATATGAGGGTATTTAATTGGTTTATCCTCTCCTTCCGTCACCGACAAAATTACAACCTTAGCCTGTTCACCTAAATCAAATAAAGCTGGACAAACTAAATTACCCACATTTTCAATCATCACCACAGAATTTAATGGGGGGTTAAGTTCCTGTAAACCCTTTTCTATCATCGAAGCATCTAAATGACAGCCTGTTCCGGTGTTAATTTGCACCACTTTACAGCCTGTAGATTTAATTCTTTCTGCATCATTAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACTAATTAAGGTAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 1897-2525 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000318.1 Anabaena aphanizomenioides LEGE 00250 NODE_1042_length_2733_cov_22.3826_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1897 37 100.0 41 ..................................... GACTTCAAATCCAATCTTTTGATACCGCCATCTATTGTCTA 1975 37 100.0 34 ..................................... ATACACCTGGAATACTGCTATAATGATGATACCC 2046 37 100.0 34 ..................................... ATTGAATGCCCATAAGCATGAATTTTCTGTAGTT 2117 37 100.0 34 ..................................... TGGCATACTTCAAGGCATATCGAATGCCCATAGG 2188 37 100.0 35 ..................................... GTTAGTCAGCGATTTAATAAAGTACGCTACCCGCG 2260 37 100.0 42 ..................................... TGAAAAGATGCAACGAGCATTAGAGCTACGTGAGCAAGAGTC 2339 37 100.0 38 ..................................... CAATTTGATAATTATGCTGATTTTATAGAGTCGGGGGC 2414 37 100.0 35 ..................................... AAAAAGTTAGAAGTTTGGGCAAGAGTAATTTATGT 2486 37 91.9 0 ...........................AC.......A | C,CC [2517,2519] ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 99.1 37 ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Left flank : ACATCCGCTGCATCTGCTTCTGCTACTTCACAAATTACCTCACCCGTAGCGGGGTTAATGGTAGCAAATTTTTTCTTGCTGACACTTTCCACCCATTCATTATTTATTAGCAGTTGGGTAGGACCTATTTTCACCTGTGGTTGTGGTCTTGTTGCTGTAACCATCAGACCCTCCTAAAATTTTAAGGCTTTTTGTTAAATGCTATTAAATTGGTTCCAGGAGTTACACAATTACGGCTAAATCTTTTATATATGTTTACATTTGCAGGTGTTTTGCGCGGATGGGTGGGTGTAAAAAATTGGTGCTGTAAAAAAATGGCTGTATCTCTTGATAGGCTTGACTTTGGAGTTATTCCGCTTTTCCACCCACCCGCGCACCTTACACAGACTGGGTTTGGGTGTTTTTTGCTCTTGACACGATTCCTGAAATGGACTATGATAGAGTCACTCGCGCAATCGAACCTTGAAAACTAAATATAGATAGGCTTTCAGGATGCCGCT # Right flank : AGAATCAAATTATGGTATAACAAGGTAAAATCGTGCATCTACCCTGAGATTATGAGCAACATAGTTGAGTATATTCATCACAATCCTGAAGAATCACAACGGTTATTAGGACTGCATTATGAACAGCTAAAGCAACTTATAGAGAAAGCAATAGAGCTACATAATAATAAAAAAGAATTGGCAGAATCTAAAAAAGTCAGACTCATTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCAATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 7572-3609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWB010000104.1 Anabaena aphanizomenioides LEGE 00250 NODE_159_length_17412_cov_11.422_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 7571 23 100.0 51 ....................... ATTCCACTGTTTCATGAATGCTTCATAGTTGTCTTTAGTTTCTAATTACCT 7497 23 100.0 52 ....................... ATTTCTAAAAGCGGTCGCCCCTTACCGCCGACTTTGTAGTTTCTAATTACCT 7422 23 100.0 50 ....................... GAACATTGAGAAGGATTTAACTGACAAAATTTTCCAGTTTCTAATTACCT 7349 23 100.0 50 ....................... CAGCGCAAATCACCATATTTTTCACGGATAAGATTTGTTTCTAATTACCT 7276 23 100.0 48 ....................... CCACTCATAACTCGGACTTCTCCATTCACCCTTAGTTTCTAATTACCT 7205 23 100.0 49 ....................... GCCCTGATTCCATCTAATTGAGGATAAAATTGAATGTTTCTAATTACCT 7133 23 100.0 54 ....................... CAGAGATTAGGACGCAACATAGATATCCCAGTGCAGAGATGTTTCTAATTACCT 7056 23 100.0 52 ....................... GATTGTGACTGGTAAGGACGAGTATGGATTTTTATTAAGTTTCTAATTACCT 6981 23 100.0 49 ....................... AGGCATTTGATTTTTTACATTCCCAGTATCAGGGGGTTTCTAATTACCT 6909 23 100.0 49 ....................... TTAACACTATAAATTGGCTTCGAGATTTCTTAAGAGTTTCTAATTACCT 6837 23 100.0 53 ....................... ACGAGTTTGATGTAACGATCCGAGTGGAAGCGAGCAGTGGTTTCTAATTACCT 6761 23 100.0 56 ....................... CAGAAAAAGTTGCAGGATACCAATTATTATTTGTCTCGCAAGGTTTCTAATTACCT 6682 23 100.0 53 ....................... GCCAAGATTCATTAGGCTGTAATTCATTAATTCCACTTCGTTTCTAATTACCT 6606 23 100.0 49 ....................... AACCAACAACCCGCTTAAATGGCGGGTTTTTATTAGTTTCTAATTACCT 6534 23 100.0 49 ....................... AAGATATTGAAAAGTACAAAGCAAATGTATATTGTGTTTCTAATTACCT 6462 23 100.0 52 ....................... TTATGAAGTCAATACTTGCTTGCTGTGCTAATTTCTGCGTTTCTAATTACCT 6387 23 100.0 48 ....................... TAACGAGGTTCTGTTACCCAAAACCCTCTATCTTGTTTCTAATTACCT 6316 23 100.0 51 ....................... AGTCAACTGTTCCATCGAGTTCTACCCGTGCGTTAGCGTTTCTAATTACCT 6242 23 100.0 54 ....................... CCACCATAGTGGACGGCATCAGCAGGTAAACGCAGCGCACGTTTCTAATTACCT 6165 23 100.0 50 ....................... ATGACGGTCTTTGACCAACTGAACGCCTGGAATACCGTTTCTAATTACCT 6092 23 100.0 55 ....................... GAAGAAGAATCATCAGATTGAATTTGATAATCTTCAATTAAGTTTCTAATTACCT 6014 23 100.0 56 ....................... AATGAGATTTTCTCTCCCTTGACGTGCTTATGGCGATATCTCGTTTCTAATTACCT 5935 23 100.0 55 ....................... ATAAAATGGCGCGGACTGGTGGTAATCCGGAGTTGCAGAAGGTTTCTAATTACCT 5857 23 100.0 48 ....................... ATAATAACACCGGACATTAGAGAGATATATTATCGTTTCTAATTACCT 5786 23 100.0 49 ....................... TGAAGACTACAATCCTGCACCACCACGTCCCGTTGGTTTCTAATTACCT 5714 23 100.0 55 ....................... GCGATCGCCTTATCAATATCCATCCCAGCAGCACCAGGGAAGTTTCTAATTACCT 5636 23 100.0 49 ....................... TAGTCTGTAAGCCGCTAGTTGAGTGGATGTAGGGAGTTTCTAATTACCT 5564 23 100.0 49 ....................... CTAATTTGCATAAACCCTAACTTCTCTTGTTTGTTGTTTCTAATTACCT 5492 23 100.0 50 ....................... TTTCTTATGTTTAGATATCTGCAAGTATCGAAGATTGTTTCTAATTACCT 5419 23 100.0 51 ....................... CAACTATGCTGGCTATTGTCTTAATCATCAAAATTTAGTTTCTAATTACCT 5345 23 100.0 52 ....................... AGATGCGATAAACGCTATTAAATCTTTTAATTCTTCAGGTTTCTAATTACCT 5270 23 100.0 52 ....................... ACGTCAACTAATTTTATTTTCTGGCTGATTTTACACAGGTTTCTAATTACCT 5195 23 100.0 50 ....................... ATGTAACTTTCCATTGCTGGGAGAAATGGATTGGAAGTTTCTAATTACCT 5122 23 100.0 57 ....................... TGCTTCATAGTCAATAATGTTTTTATTTTAAAACGACAACAAAGTTTCTAATTACCT 5042 23 100.0 49 ....................... TGCTTCATAGGCTGACAACTCTTTTTTAAGGGATTGTTTCTAATTACCT 4970 23 100.0 52 ....................... AATTAAAATAATTTTAGACAAAATAAAACCCTTGATTAGTTTCTAATTACCT 4895 23 100.0 47 ....................... AACATCAGCACGAGATAACCGACGGCATACAAGGTTTCTAATTACCT 4825 23 100.0 51 ....................... TTGTCAAATATTGATTTAGGAGCATTAATAACGGGTAGTTTCTAATTACCT 4751 23 100.0 49 ....................... TTTAAGTAAACTTACACAGTATAAAAAACCGTATAGTTTCTAATTACCT 4679 23 100.0 52 ....................... TTGCTGCCGATTCTTCATTGATTGTGAAGCATGATTAAGTTTCTAATTACCT 4604 23 100.0 52 ....................... CATACAGTAATCAATTTGAATAGGTTAGTTATTGCGTTGTTTCTAATTACCT 4529 23 100.0 49 ....................... ATCACTTAGGCAGCAGATATCAAAAATTTCTAATTGTTTCTAATTACCT 4457 23 100.0 53 ....................... ACTTGATTATTTACTTGTTCTAGGCGATCGCACAATTCAGTTTCTAATTACCT 4381 23 100.0 50 ....................... TACAACTCCCTCTATTTCCATTTTTTTTGACTTAGAGTTTCTAATTACCT 4308 23 100.0 49 ....................... TCGGTTTAGCAGTGGCTGTAAACCTGACTTGCAGAGTTTCTAATTACCT 4236 23 100.0 56 ....................... TATTCAAACTCAAACTCATTTGAGTCCTTTAGCAAAAATTCGGTTTCTAATTACCT 4157 23 100.0 48 ....................... GAAAATCCCCAGAAAAACTCACCGCTTTTATTTGGTTTCTAATTACCT 4086 23 100.0 51 ....................... ATAGGTGCAATGGAGCATCTGGGGTCGTAGTCAATCTGTTTCTAATTACCT 4012 23 100.0 52 ....................... GGAACTTTGGTTGTCAGATCCTCAACATGGGTCATTTGGTTTCTAATTACCT 3937 23 100.0 52 ....................... GCTTGCGTCTTAGTTTCTTTGTCATGCGGCTATCTTGTGTTTCTAATTACCT 3862 23 100.0 49 ....................... AGTGGTACTTGTTTTAACGAGGTTCTAATCAGTTTGTTTCTAATTACCT 3790 23 100.0 59 ....................... CTTTCACTAGTCCCCACAAACTGCAAAGGCTTTGATAATTCTTGCGTTTCTAATTACCT 3708 23 100.0 54 ....................... TGGCTATAGTTTCCACTGATTGAATCCTAAAAGGTTTTAGGTTTCAAACTACCA 3631 23 82.6 0 .C...........A..A.A.... | ========== ====== ====== ====== ======================= =========================================================== ================== 54 23 99.7 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : GCTGGATGTAGCTGTTCTGGGCATGATTTTGAGGCTACATAATGTGATTTTCTGTATTTTACTATGTTTTGGTCCCCTGGTGGGGATGGGGTGAGGAGTGGGGAGTCAGGAGTCAGGAGATCAAGGAGTCAGGAGATCAAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCGGGACTTGAATATAAAATAGAAAGAGTGCAGTAATTATTTGTAACAAAAAAACTCTTGACAAGTAGGTTGCTAAATTTTACTCTTGGATCAAGATAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGGGGGTCCGCCAAATCGCCAGAACCTTGATAATTGAATAGTTCTAGCGTTTCATCAGTTTCAGTTGGCAGTTGACCCGAAGCCTGAAATGAGGTTTTTTGAGAGGTCCGCCAAATTCCCCCCTACAGTCTGCTCCCAGACTATGTTTCAGAGGGCGGGGTTTCTAATTACCT # Right flank : GTTTAAATGAATCAAATTGAAACAGATATCAATACTGCTCGGTTAAGGATTTTCGTAGGTTGGGTTGAACAAAGTGAAACCTAACAAACCCTTGTCAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCGATTTTATTTTTTTGTGCTTAACCGACAAGTATTGAAACAGATATTACAAAGATAATTAAAGCCCAAAGATTAAGTTTTTCAGAACTTTTTTAAATTTAAGGCTGCATAGCTATAAAGTAATAGAAGTAAATTAATTTAACCAGTAATTTACAAGATAAAAATCGAGCAATTACAACTTTTGTCCAGTAATTTAACTGGTAATTTTTTTTGCATATTTAATTTACATCAATTAGTAATAATTTATCCAGAAATTTTTCTCCTTTTTAAATTTTCTAGAAGAAGCAACATAGTTAAAAGTGGGATATTTTCCATCGTTGACTTTTCTGGTAAGAGTTAGGAGTTAGATTATGCGGATTCTGATGATTCAAC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //