Array 1 9602-7377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKD010000012.1 Methanolobus bombayensis strain DSM 7082 Ga0451168_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9601 29 100.0 32 ............................. GAGAAGAGTGTGTTGTCATAACCGTCACAAGC 9540 29 100.0 32 ............................. AAGAACCAGAACGAGAAACCGGAGAACCGAGA 9479 29 100.0 32 ............................. CCAATCAAAATAATCATCAAACTCATTCATGA 9418 29 100.0 32 ............................. TTTGACCCCTGTACCCATCCGAGATATTCGTT 9357 29 100.0 32 ............................. ACAGTGGAATCAACAAGACCAGAAACTTCAAA 9296 29 100.0 32 ............................. GACGATGTGACCGGTCTGGTGGCAAAAATAGA 9235 29 100.0 32 ............................. ACGTAGAACTCGTCAAAGCGAGGATCTCTCTC 9174 29 96.6 32 ............................A TTTCAGGACATTTGTTGCAGCTGTCTTGCAGG 9113 29 100.0 32 ............................. TAGTTGGTGCAACATTCAATCTTTGCCCGTAT 9052 29 100.0 32 ............................. TAAGAGGATCGCCAGCTCTTGACTTGTACCTG 8991 29 100.0 32 ............................. ACTGCGCGATGTCATCAAAAACAACAGTGGCG 8930 29 100.0 32 ............................. CGAAGCCACCACCAACAGCTACAAATGTCGGA 8869 29 100.0 32 ............................. TCAGTGTACCGTCCGTGGTTGTGTCTTCTGCT 8808 29 100.0 32 ............................. CCCGGTATATGGCCACTATTAAGAGATATGAA 8747 29 100.0 32 ............................. CACCTATACATCAAATTACAGACGATGGTGAT 8686 29 100.0 32 ............................. AAGCCCGTACACAGGAGTAATTTCAATCCAGA 8625 29 100.0 32 ............................. AATCTAAGGATAAGGAAAAAAGCGGCGGGTAT 8564 29 100.0 32 ............................. GCTTTCATGTAACCCTCACTTGAAAATGTTTG 8503 29 100.0 32 ............................. AACCCACCACCATTGGCCGTAAACCTGTCCTA 8442 29 100.0 32 ............................. AAGGAGATCATAAGATGAGAACTGTTGAACTA 8381 29 100.0 32 ............................. TTCTATGTAACTGGATTGTACCTGTATCTGAG 8320 29 100.0 32 ............................. ACGTATTGCCGGTAACATAGTCCGTAAATTCA 8259 29 100.0 32 ............................. CTCGTCTGTAGAGTCAGAGCTAACGCTATTAT 8198 29 100.0 32 ............................. ACACCATCTTCTTTTAGTTCCTTTCTGATGTC 8137 29 100.0 32 ............................. TGACCGTTTAACGTGCTCGGTGTTAATCTCTG 8076 29 100.0 32 ............................. CGAATTACCGGGGAAGTGTGGATTCGAACGAA 8015 29 100.0 32 ............................. GATGATATAAAAAACATCGGTAACGATGTCAT 7954 29 100.0 32 ............................. AAAAATTATATGAAATATATAATACTGTTTTC 7893 29 100.0 32 ............................. GTTACTATCTATGTAGCTGATGAGGTTAAGGA 7832 29 100.0 32 ............................. TTCTATGTGTTGGTTGTCATGTTAAGGCAAGG 7771 29 100.0 32 ............................. TACAATACTGCTATCGATTTCCCTAGCACAAC 7710 29 100.0 32 ............................. TTACCTAATCTGAATAGTGAACAGCAGCAATT 7649 29 100.0 32 ............................. TGATTTACATGCACTGGAAACTACCCCGAAGA 7588 29 100.0 32 ............................. AACTTCAATGGGAAAACAATGCTTTAAGAAGG 7527 29 100.0 32 ............................. AGATCTCCCAGGGATGAAGAAGAAATCAGAGA 7466 29 100.0 32 ............................. CCCTCGAATCAAGTGCCGAATCGTGGACCAAT 7405 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.7 32 GAGTTCCCCACACACGTGGGGATGAACCG # Left flank : TTCGGCAGGTGGAATTGATATCTCAGATACACCTAAGGATCAATGGCCACCTGCAATTCCAAATGAAGGGAGTATTGGCGATGTTGGTCATCGTGCTTGAGAATGCACCCGACAGACTGCGTGGACGTCTGGCTTTGTGGCTGTTAGAGGTTCGTGCAGGTGTTTATGTTGGTGATTATTCAGTAAAGGTAAGAGACATGATTGTCAGGAATATAAAAGCAGGCCTTGAAGATGGAAATGCAGTCATTATATGGAACTATCCTAATGAAGCAGGGTATGATTTTATTACAATGGGTGAAAACCGCCGAATCCCTAAAGAAATGGATGGGGTTAATTTAATATCTTTTTTATCTGATACTAAATAATCAGGTCTTATTATGTTCATGGGTTTTACTGATGCAGAGGTCAAACATATGGATATCTCATTCAAATCCCATAAAACCTTAACAATAATGGAATACGGAAGCTTATTTCTTTATTGATTACATAAAAGACGCACA # Right flank : TATAATATGTATACAATCCATTTCCGTATTTTAGGGTAACAGACTTCTTTCAATCCCCTCAATAATATCATATAGTAGCTGCACCCTAAAAATATTAACAAATGTCAGAAGAAACAGGGAACAAAATATCTGTGTATCCTCTTCTCATGGTGAACTTTATCGGTACCATGGGGATAAGTCTAGTTCTTCCTTTCCTTATTTTTCTGGTGGAAAGATTTGGCGGCAACGCTCTGATATATGGGATTCTTTCCTCGATGTATCCGTTTTTCCAGTTGATAGGTTCCCCACTTCTTGGCAAATGGTCTGATACATACGGCAGGAAAAAAGTCCTGTTTGTCAGCCAGGCAGGTACTCTTTTTTCATGGATACTTTTTTTTATAGCTCTCTTTGTACCCATAATAATACTGGTAAATGTAAACTCAGGTCCCCTTGGGACATTTATGCTCACTGTTCCTTTGTTGATTCTTTTCATAGCAAGGGCACTTGATGGTCTGACAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 447351-442334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKD010000001.1 Methanolobus bombayensis strain DSM 7082 Ga0451168_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 447350 37 100.0 38 ..................................... TTGAACCTCTCCGGGTCACTTGTTTGAAGATCCATCAA 447275 37 100.0 36 ..................................... CTGTAAGGGTGCAATGGGGTAATGGTATAAGTCAAA 447202 37 100.0 35 ..................................... ATATTTCCAACCCAGCATTTATCTGTATACCCTCC 447130 37 100.0 35 ..................................... CTATATGAGCGTTCAAAAGGCTATAAAGAATTATG 447058 37 100.0 36 ..................................... CCAGTTGACCGATAATGACGGTAGTGACCTTTTTAC 446985 37 100.0 37 ..................................... ATAAGGCAGATATTACGCTACACAGGCAATTATACTG 446911 37 100.0 35 ..................................... ATCTCCCAAATCTCTCAACTGTTCAACATACCAAA 446839 37 100.0 35 ..................................... CATTCACATCTGTGGTAGGACGATTGCTATTCCAT 446767 37 100.0 37 ..................................... CTGTTCACAGTTCTAACTTCCTTCTCCAACATTCCGC 446693 37 100.0 36 ..................................... TCAATTATTATATCTATTGGAATATTAGTCCAGTAA 446620 37 100.0 37 ..................................... TCTTTGCAAGTGAAGATGTAACACTAACCGAAGCAGG 446546 37 100.0 36 ..................................... ATCGAACTTCTGGAATGTTGGCAGCAGTATCATCCG 446473 37 100.0 37 ..................................... ATGCATCTATCAGTAACCCTGCACCAGTGAATATAGA 446399 37 100.0 36 ..................................... ATTCTATCGATGGAACAGGAACTTGGCAAACTGATG 446326 37 100.0 36 ..................................... AGTTCCAGAAGTCAAGAAATGTTATGTCAGGAGTTG 446253 37 100.0 35 ..................................... TATTGTTTGATGTTGTATATTATATCATGGAGTAA 446181 37 100.0 36 ..................................... CAAGATCACTCTGAATATCTGCGCTATCTGGAGAAT 446108 37 100.0 37 ..................................... TCAATGTCGCCAAACGTTGTATGTGCAGCAACTATAT 446034 37 100.0 36 ..................................... ATATCATGATGATTTTTCTATACGAATTATGGTTAG 445961 37 100.0 35 ..................................... TCAATAATGAAGATGAAAGTACCTGATGGATAGCA 445889 37 100.0 36 ..................................... AATGGTTACGATATTGAAATATGCAATGAGCCATTT 445816 37 100.0 34 ..................................... TATTTCCTGACGTTGCATTTGAACCGGCAGTATG 445745 37 100.0 35 ..................................... TCTGGTTCTTCTGCAAGCAAACGGCCGGATAAATC 445673 37 100.0 37 ..................................... TGACTGCGTTTCGTTGTTTGAACTGCTAGAAAAATAT 445599 37 100.0 37 ..................................... TTTAGAACTGATATACTAACAAAAGGAACGAATTCCT 445525 37 100.0 38 ..................................... ATTTTCATCATATATTCACATCCAGATGTGAGATTGTT 445450 37 100.0 36 ..................................... ATAACCTCTTGATTTAGCAAAAGCGTTATACCTACT 445377 37 100.0 36 ..................................... GAGATGATTACCACGGAACAGTAGATATATTGCTAC 445304 37 100.0 34 ..................................... CAATATCAAACAATCCATGTTTCTATGGACAGGC 445233 37 100.0 35 ..................................... AACAGTTCAATTGAAAAAAGAAAAGCCATATATGA 445161 37 100.0 38 ..................................... TTCAGATGCATCCATTTTTGATCTGTGCAGGTGCAACT 445086 37 100.0 40 ..................................... GTTCAAAAATACGATACAATATAGAACATCTCATACAATA 445009 37 100.0 36 ..................................... TCAATAGTAAGCTTCTCACTGATAGTGCTTGCACTA 444936 37 100.0 36 ..................................... TATTAGTTGCATATTTTGAAATAAACTGCTGCTGTT 444863 37 100.0 40 ..................................... TCCTCATCTTATCACTAACGAACCGTCTAACAGTCTCCGA 444786 37 100.0 37 ..................................... TCAATCAATTCATAATCAGGCTGTCTGTCATGAACTC 444712 37 100.0 35 ..................................... ATTGAATCATTTGATGATACATATGTATATGAAGA 444640 37 100.0 36 ..................................... TGGTATATCCGGTACTGTCAGGGAAGAACGTGTAAG 444567 37 100.0 37 ..................................... GTCATCCTCTACTGGCGACACTGACACCCACATTTTG 444493 37 100.0 36 ..................................... TATTATATTTTATTCCACCATGGCCAGAATCACCGA 444420 37 100.0 37 ..................................... ACTCTATGTAATCCCGGTCATTTAGTTTTGACGCATA 444346 37 100.0 38 ..................................... TATACAAATGAACAAGTATTTAATGCTTTATTCCATAC 444271 37 100.0 34 ..................................... AACGTACTGCAACTGATAAAACAAAATATATCAG 444200 37 100.0 39 ..................................... GTATAATATATGTATGTACATACTTACACAAGAGGACAA 444124 37 100.0 35 ..................................... TTTTTTGAAAGATGATGGGGATGATAACAATGAGT 444052 37 100.0 37 ..................................... AAATTAAACCAATCTATTACAATCCCAAAAAAGAATA 443978 37 100.0 35 ..................................... TGTGAAGAGCTTGCAGCTAGTGAAGCAAAAATTTT 443906 37 100.0 35 ..................................... TCCCATAAAAACAATATAATAACCAATGACAGCAG 443834 37 100.0 37 ..................................... TTATAAACGATAAATCTATCATCTAAAATATTTTCTA 443760 37 100.0 36 ..................................... ATATCATGATGATTTTTCTATACGAATTATGGTTAG 443687 37 100.0 35 ..................................... TCAATAATGAAGATGAAAGTACCTGATGGATAGCA 443615 37 100.0 36 ..................................... AATGGTTACGATATTGAAATATGCAATGAGCCATTT 443542 37 100.0 36 ..................................... CATATACATTATCACTGCCCCAATTGTTCTTAACTG 443469 37 100.0 36 ..................................... TATAAGAAAACTTATCACATGCCACCGTTTACAAGC 443396 37 100.0 33 ..................................... CTCAATGTTAAATGTGTATATACCGATGAAAGA 443326 37 100.0 35 ..................................... TTGATACTAGAAACGATATTAATATAACTCATTTT 443254 37 100.0 39 ..................................... TATCATGTCTAAACTTACTGAAAATGTTCACAATTTATC 443178 37 100.0 35 ..................................... TTAAGGAACAGAGAAGATTAAAGAAGATAGAATCA 443106 37 100.0 39 ..................................... TGGATTATCTCATATGGTTGCGGTCAAGATAATTGATAA 443030 37 100.0 35 ..................................... AATGGAGGTATATCATATTCAACACCAATGGAATA 442958 37 100.0 36 ..................................... TTATCATAGCTGCTATTGCTATGTTATTCTCGTATC 442885 37 100.0 37 ..................................... AAAAGAATGGTACTATTAAAATGGAATACATTAACAA 442811 37 100.0 35 ..................................... GATATCAGCCTAATACAGCAATTAATGAAATGGAG 442739 37 100.0 34 ..................................... AATTATGCTGGTTCTCAACGAGGAAAAGCATATT 442668 37 100.0 35 ..................................... ATGTAACTGTTTCACCGGCTGCAAATACCTCTGAT 442596 37 100.0 36 ..................................... TAAAAGTAATGAGTTAAGGCTCATTACTGTAAAATA 442523 37 100.0 43 ..................................... TAAAAGCTGTTGAATTGGGATACAAAATTGTAATAATTGACGG 442443 37 100.0 36 ..................................... AAAGGTACAATCACACCATTCCTGAAGAACTCCATC 442370 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 69 37 100.0 36 ATTCAAAATCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAATCCGAAGTCTATGTAGTTTCCAAAGAGCACCACATAAAAGGAATAGTAGATGAAGTTCTTTTTTTAGAAGATGATACTGCTGCCCCATTGGAATATAAGTTTGCAGAATATAAAGACAAAGTATTCTCAACTTACAAATATCAACTTGTTCTACAAGCATTGTTGATAAAAGAAAATTACAACATAGAAGTTGAAAAAGGATATATCTGTTATACTCGTAGTAATAATATGATAAAGGAATTGGCTTTTAAGTTATCAGATTTTAAAAAGGCTAATGACATAATCACAGATATTATACAGATAGTTGACAAAGGAAAATACCCTAAAGCAACAAGATCAAAGAACAAATGTATTGATTGTTGTTACAGAAATATATGTGTATGACATAATTTTCTTATACTTATAAGGAGTTCAATAATTTTGCAACAAGAATTAGCGTGTTCTGAAAGAAGCAATTTAAAGCTTTATTTTGCTAAAAACAGGAAATATTTGCGCT # Right flank : ACTAATCTCGTGGCGTAAGAATCGGCAGAGAATGTATTCAAAATCAAATTGTAATATACCAACGCAAGAGGAGGTGAGAAAATAAGTTTGCTAATATGCAAGGGTGATTTTAAGTTCGAGCTAGAAATCACCCTCGCGGAAATCGTGGCTGCCATTATGGCAGTCCTTTTTCTAATTAGTAGATTATTTTTGAGCCATAAAAGCCTTTTGCGTTGCACTTTTCCAGGTGACATTATGACAAGACCAATGTGTCCAAGGTGTAAACAAAAAATGGTATCTGCATACATTCAGTAACTTACATTCAGGGAACTTGAAAGGTAAATGATGCGGGGTAATAGGTAAGCCCAAAAAACCGAACTTCCATAAAAAACTCTAATTTTTCCTGTCAATTTGAGAAAAACGGAACTCCTAATAATAATATTATGACATATATAATACGAGTATTAAAATAAAATTCAAAAATGTTTTCTTTTTTATTCCGTAATATTTATGTTATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAAATCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //