Array 1 98425-95081 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKV01000003.1 Akkermansia muciniphila strain GP05 scaf-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 98424 31 100.0 34 ............................... TTTACAGTAGGTTGAGCAAAGAGACGGCAGATCG 98359 31 100.0 33 ............................... AACACATAAACCGGGACGACCGCAACCCGCCCG 98295 31 100.0 34 ............................... CGCCGACTTGGTAAGCACCTGCATCCCGGAACAT 98230 31 100.0 34 ............................... TGCTCCTGAGCGGCCCGTTGAATCTCCAAAGCCT 98165 31 100.0 34 ............................... CGCTTCGGCGCGTCCGGCATGGGGGTCGTCGATG 98100 31 100.0 34 ............................... AACTGTACTACGCTATCGGCGATGTTCGCCGGAA 98035 31 100.0 34 ............................... TACTGCCATGCCTGAAAGCAAATATAAACAATTT 97970 31 100.0 34 ............................... CACGGGCTTCATGGTGATCGCAAGGCCGCGGAAG 97905 31 100.0 34 ............................... TTATTTGCCTGTCGGAGTGCTCCGTCGTCTGGCT 97840 31 100.0 34 ............................... CCTTACCCCGGAAGAAGAGCAAAGCCCTTTGATT 97775 31 100.0 34 ............................... AGGTGCAAAGAATCTCCGTGGACGACTGTTGCCG 97710 31 100.0 35 ............................... CGTCGTAGTCATGGCCCCCCGGATGGAAGTTAAGA 97644 31 100.0 34 ............................... GCCTGCCGGTTCCATTGACCGAACAAGCCTATTG 97579 31 100.0 34 ............................... CAATACCGAATAGAAACTCGGTTTCGCCGAATGG 97514 31 100.0 35 ............................... CATGATGGGAACATTGAAAGTAAAGCATGACATTA 97448 31 100.0 34 ............................... CCCGGACTTTTACGAGGGCGCGGGCCTGTTTGCC 97383 31 100.0 34 ............................... CCGGCTTGGCATACCGTTGCAGGAGAAGCAGACT 97318 31 100.0 33 ............................... CGCTGGTGTGAGATAGTAGCGGTGGACAAAAAA 97254 31 100.0 33 ............................... CGCTGGTGTGAGATAGTAGCGGTGGACAAAAAA 97190 31 100.0 34 ............................... ATGATATAGACGGCACTATATATTGTATGGTTAA 97125 31 100.0 34 ............................... AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 97060 31 100.0 34 ............................... ACCAGTAGGGAGGATAGACCACACCGCCATGACA 96995 31 100.0 34 ............................... GTAGAGCGGCGTGATTATTCAGCGTCCTCGTCTA 96930 31 100.0 34 ............................... CGCAAGAAGCGGTGGATATCGGCGGCGTCATAGT 96865 31 100.0 34 ............................... TATTACCTTGTCAAATGTTTTTTTAATTTGTATG 96800 31 100.0 34 ............................... CCGGCGCGAAGAACCTGCGTGTAAGCAACCGGAC 96735 31 100.0 34 ............................... TAAATAATCGATGTCTCCTAAGCGGCGGTTATGC 96670 31 100.0 34 ............................... ATAGCACATGGGAAATTGTCCTACACCGGGAAGA 96605 31 100.0 33 ............................... AACGGGTTATAATTGTGTCATACAAATTAAAAA 96541 31 100.0 35 ............................... TGTCCACATATAGACGGCAGATATATACCAAGGAA 96475 31 100.0 34 ............................... CCGGTAATTCTGATTCCGCAGTTTTTGAGGAACT 96410 31 100.0 33 ............................... TGTCCCTTGTCCTGTTCGCCGAAACGGTATCTG 96346 31 100.0 33 ............................... ATCATCCGCAATGTTGAAGGCTCTACGGGCCGC 96282 31 100.0 34 ............................... CACCGTCATCTATCCCACGGGGGCCGTTGAAACA 96217 31 100.0 34 ............................... ACCCTTTAAGAATCAACAGGTTATAATTGTGTCA 96152 31 100.0 35 ............................... CGATAGGGATTGCAATTTAAGGCCTGAAATGGACT 96086 31 100.0 33 ............................... AGGATTGGCCTCAAATGTGCCCTATTTTGCATT 96022 31 100.0 34 ............................... CGTTCGCGGCTTTATCGCCTTTCACCGCCCCGGA 95957 31 100.0 34 ............................... ATGGCATGTGAAACATTTGTACGCCGACGGGGAT 95892 31 100.0 33 ............................... TTTGCCCTGGGCGCGGTCGGCCCAGGCCCGCAG 95828 31 100.0 35 ............................... CAAATCTACCTTGACGCCGAAAGACGGCCTGCGGT 95762 31 100.0 34 ............................... GGTGTATGTCGCCCGTTTTAGGTACAAGCGAGCG 95697 31 100.0 34 ............................... CTCGAGCAGGAAGCGGGCAGGCCGGTAGCCTACA 95632 31 100.0 34 ............................... GCGTCGCCGGAAGCGTCGCGGTACGGCATGGAGG 95567 31 100.0 35 ............................... CGCTGGTGTGAGATAGTAGCGGTGAACGAAAAACG 95501 31 100.0 34 ............................... GGCGGAAACGTCCGCGCGCTCCTACAGTGTCCGG 95436 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 95371 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 95306 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 95241 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 95176 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 95111 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 52 31 99.8 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 320331-319108 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKV01000002.1 Akkermansia muciniphila strain GP05 scaf-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 320330 36 100.0 29 .................................... AAATCTTGTTGACCAGCATGGATGCGGAC 320265 36 100.0 30 .................................... TGGCCGCATATTCTTTTGATACGAATCCGC 320199 36 100.0 30 .................................... CGGTATTACCCCATGCGTGGCGCAGGTCGT 320133 36 100.0 30 .................................... GTATGCGGAGACCATTGCACATGCCCGCCC 320067 36 100.0 30 .................................... TGTATGACACGGACGGACAGCCCGGCATCT 320001 36 100.0 30 .................................... GGATGAGAATGATGATGTCATTGAACCTTG 319935 36 100.0 30 .................................... ATACAATGTGGAATCCGTTGTGTCTTGCGA 319869 36 100.0 30 .................................... ATACAATGTGGAATCCGTTGTGTCTTGCGA 319803 36 100.0 30 .................................... AACATTGTGAGTCTGGATTAACATTGTGAG 319737 36 100.0 30 .................................... CAGAATCCACATGATGACGCCCCTACCTCC 319671 36 100.0 30 .................................... AGAGGACGCAGACCCCGATGAACTTTTGCT 319605 36 100.0 30 .................................... AAGAGTACAGTGAGATTCCACAAGCTCCTG 319539 36 100.0 30 .................................... GGATGACGCAGACCCCGATGAACTTTTGCT 319473 36 100.0 30 .................................... TATCCCATACAGCAATCCCACGCCACTGCC 319407 36 100.0 30 .................................... GCTAGTCACAACGGATTCCATGTTGTAGTT 319341 36 100.0 30 .................................... TGACCCAGCTAGTGGCCAGACAATCTCCGG 319275 36 100.0 30 .................................... GCATGCGGGCGTCTACGGCGTAGTCATAGA 319209 36 100.0 30 .................................... TGATGAAGAGGTGAGGGGAGGGGGGAGTTA 319143 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Left flank : TCTGTCATGTACCGGGATAAACAGCTGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGACAATCCGGACCGTATGAACCATGGCTTATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAATATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGCGTTACTCAGGAAAGAATGGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTGCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGATGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCT # Right flank : AAATACGCCTCCTGTTTGATGACGCAGGGGGATTGTCCGTCTTTGGCCGCGCAATTCCAAACGGATTTTTGTCAGTCTTTTTTTAACGGAGCGGGAGGAATGAAGCTGTGCGTCCAGAACATGGCGCCGGTTGCGGAGGTGATTCCGTCCATGTTAAGATAACGGGCCAAAAGCAGGGAGGGGGAGGAGTGCCCCATCTCCTTCTGAAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGGTAGGAGGCGTAGGTATGCCTCAGCACGTCCTGCACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCATCCATTTCTTTTCCCAGTTGGGCGGGCAAACGGGACGGGAGGGGGAACCGGCGGAAGACGTCCGGCTGAGGATGGCGCCCAGCACGGGAAGGATGGAAACGTGGCGGCTCCCGCCTGTTTTGGTATGGCTGGGCGCCAGTGAAACCAGGCCGGATTTCAGGTTGATGTTCTTCCAGGTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 390904-388524 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKV01000002.1 Akkermansia muciniphila strain GP05 scaf-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 390903 33 100.0 35 ................................. CGTGCGACCATAGAAAGCGTTGACGGGGTGGAGAT 390835 33 100.0 34 ................................. CGGCAGTTTCAGTCGGGCGCTTTCCCGCATGGAA 390768 33 100.0 35 ................................. TGCCACCCGGTAGCCACCCTTGGCAGCCATTTGTC 390700 33 100.0 33 ................................. AGTCTGAACTGGCCCGTTTCTTTTCGGAGAGCG 390634 33 100.0 34 ................................. CGCGCAGTCCAGTTTTTGGAGGTAGGAAAGCCCG 390567 33 100.0 33 ................................. GGACTACCGCCGCCGCGCGCAGGAAATCCGCGA 390501 33 100.0 33 ................................. TTTCACGCGTTTCCGGAGTAAACACTTTTTTAG 390435 33 100.0 34 ................................. CTGCGTATTCCTGATTTCTTCATTCTCCCTGCTC 390368 33 100.0 34 ................................. TTCCGCAAAATTGTATCAGCGCATTTACGCCAGT 390301 33 100.0 34 ................................. CGGGAAAAGCTGGAATCCAGAATGGAAGAAATAG 390234 33 100.0 34 ................................. CGCGGGGCTTCCGCATCCATCGGCGATGGGTATA 390167 33 100.0 34 ................................. AGTAGAGAGTGCGAAAAGCCACTTGCCCCCGTTG 390100 33 100.0 34 ................................. AACTGCGTCCAGATAATCCACATCTCCTAATCGG 390033 33 100.0 34 ................................. CTTGAACAGGAGGCGGGCATGCCGGTGGCATGTT 389966 33 100.0 35 ................................. CCCTGTAGGGTAGATGACGGTGGAACATGCCACCG 389898 33 100.0 34 ................................. CGCAAATAGGACGAGGGACAGGACGCCCGCGCCG 389831 33 100.0 34 ................................. AATTTGGCGGCCGCCATGCGGACAAGGGCAATCT 389764 33 100.0 34 ................................. GTTTCCGGGGGTTAAATGGATTCCGGGGGTGCAA 389697 33 100.0 34 ................................. TTTATATAGTGTTTTGTTGTCTGGGGGTTGTTCC 389630 33 100.0 34 ................................. CTGACAACGTTTTGCCCGCCACCGATGATTTAGA 389563 33 100.0 34 ................................. TATTGTTTTATTGTTCCAGAAGTTAAATGCGCCC 389496 33 100.0 34 ................................. ACCGCCTTCCACAAGCGCACTATGTCAGAATCAT 389429 33 100.0 34 ................................. GTATGACACAATCGTAAGTTATTCATCCGCAAGG 389362 33 100.0 34 ................................. TGTTTGCGGAGACCATTGCACACGCCCGCCCTGT 389295 33 100.0 34 ................................. CCACTGGTGAAATTGCCACCCTAGTTAAAAACCC 389228 33 100.0 34 ................................. CGGTTTTCCTACTATTCCGATAGGGATTGATATT 389161 33 100.0 34 ................................. GCACCGGAAAGGTTGAAACAATCATGGAGACTGA 389094 33 100.0 34 ................................. TTCATAATGTTTTCCTTTCTTGTTGGTGGTTTTA 389027 33 100.0 34 ................................. AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 388960 33 100.0 34 ................................. CCACAGGGCAATCATCTCTAAGTCATCGGTGGCG 388893 33 100.0 34 ................................. GCCGAAACGGTATCTGACGCCCGTCCTGTAGCGG 388826 33 100.0 34 ................................. CTCGCACGGATATGTTCCGATTGCATGGTTGCAA 388759 33 100.0 34 ................................. CGCTGGTGTGAGATAGTAGCGGTGGATGAAGAAG 388692 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 388625 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [388602] 388556 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 36 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGGTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //