Array 1 157-1905 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFG01001108.1 Cylindrospermopsis raciborskii CS-506_A scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 157 36 100.0 44 .................................... CTTCAATACTATGCCTTCAGTACCTTCTCATTTACTCATCTCTG 237 36 100.0 36 .................................... TTGGAGGAGTGTGTAGACTCCTTCCGCCGGTTAAAA 309 36 100.0 41 .................................... GAATAGATACAAAGTATATAGGCTACGGTAGCCGCGCGGCT 386 36 100.0 33 .................................... ATTTTACTAACTCACGAGCTAGCCCTTGTTTTT 455 36 100.0 40 .................................... TTACATTTTTGGTAAATTACAAAACTGCTACAATTCTAAA 531 36 100.0 39 .................................... CTTTTAAAGCGTGGCAGAACGCAATAAAAACCAGTGGCG 606 36 100.0 34 .................................... CTTTTTTGCCCTTCCAAGACAAGACTCCGCTTCT 676 36 100.0 39 .................................... TAACTCCTCAAGAAGGATTACCTCTTGAGGTTGGAGAAA 751 36 100.0 39 .................................... ATAACTTGGGATCATTACTGGGATTAACGGGATAAGAAC 826 36 100.0 39 .................................... TTTTTGGCCTTTTCGGCCTCAAGGAGATTTTTATGAGAT 901 36 100.0 35 .................................... GACATAGAGTCAGCTAAAAAATATTCCTAGTTTAA 972 36 100.0 38 .................................... TTTTCTACCTAAATGGAGTAACTCCATTTATCTGTTCC 1046 36 100.0 42 .................................... TCATCTCAGTAATCAAGGGTAGTGGGACAAGCGATTACTAAA 1124 36 100.0 50 .................................... GCTTAACGCCACCGCCTTGTGCCAGCCACCCACGTTACGGGTGACCACTA 1210 36 100.0 36 .................................... GTAAGAGGTGGTAGTTGGGCATCTACAATGGAAGAA 1282 36 100.0 37 .................................... CCCGCCCCAGTGAGGGTTTTTTGTTGTCTAAAAATAT 1355 36 100.0 39 .................................... GGATCTGGTTTAGGGTGAGTAGAGAGAGTAGGTTTAAAA 1430 36 100.0 38 .................................... TGGGCTTGCTCGATGGATTCTACTTGAAAAAGTGGAGC 1504 36 100.0 38 .................................... CCTCAGAACAAAACGCAACCGCGTTGAAAAACAAGAAA 1578 36 100.0 35 .................................... GCGGTTACTGTAACTGTAGGCTGCGCGGCTACGGT 1649 36 100.0 36 .................................... GCGCTCCCCTTTCATTAAACTCTTCAAACTATCCCT 1721 36 100.0 36 .................................... GATTTAAATGAATTTAAACGGATCTAAATCGATTTA 1793 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 1867 36 83.3 0 .......................CT..CGG.....A | A,T,C [1893,1899,1902] ========== ====== ====== ====== ==================================== ================================================== ================== 24 36 99.3 38 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : GGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAAGGTAGTGGAGGTGAAAAACAGATAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGGA # Right flank : GTGGTCAAACAGCTTGTTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATANTTCCATGCCATAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACGTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 10450-12547 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFG01001118.1 Cylindrospermopsis raciborskii CS-506_A scaffold196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================ ================== 10450 36 100.0 41 .................................... ACACATGGAGACAGTTAAAACAACTGATTCTAAACAGTCCG 10527 36 100.0 36 .................................... GAGGCATGCCCAAAAAACTCCAAGGGACACTTCCTA 10599 36 100.0 38 .................................... GAACTAGCTTAACTTGCGCAACCATAGAAGATTAAAAC 10673 36 100.0 29 .................................... CACCCCACAGCCCCCACAGCCACCACAGT Deletion [10738] 10738 36 100.0 35 .................................... GATCCACCTCATACTCAAGCTCAAGAGCCTTATAA 10809 36 100.0 37 .................................... CTCCCGAAGAGTCCTAAGAAATTATCTCTTGCAAGAG 10882 36 100.0 37 .................................... ACACTGAAATTCCAAAATATTTTTTTGGTATATCTTT 10955 36 100.0 37 .................................... CTAGTCTCATACCTACCTGGAAACGCTTACATGAAGC 11028 36 100.0 34 .................................... ATAATAGTTGTTTTTTAAACTATTATCAAGGTTG 11098 36 100.0 37 .................................... CCTCTACTATTTGTCCATTGGCATTGCTATCTAATAC 11171 36 100.0 40 .................................... GGACTAATAATCGGTAGACACAGCTCTACCGTAGGCGACT 11247 36 100.0 39 .................................... ATACAGAAACTCTTAATTTAGTGTTACCTAGATACTTAG 11322 36 100.0 39 .................................... AATCTTTAAGATAGCTCCTGAATGAATAGGAGAACGAAA 11397 36 100.0 35 .................................... GCTGAAGCATATAACAATAATGGAGTTGATTTAAA 11468 36 100.0 35 .................................... CTATGATTTGATGATCCACTGGACCACCATAATAA 11539 36 100.0 39 .................................... GAAAAAATAAATTGACTTTACAGCTTGTTGCGTACAAAT 11614 36 100.0 36 .................................... CGTGTATATGAGGGATAGTCCCATACATTATCTGGA 11686 36 100.0 36 .................................... GGAAATAACACTGCTGTTGGAATCAATGCTCTTTTT 11758 36 100.0 37 .................................... TTTGCAACTTCTCCGAAATGGAATCTTCAGTTAGTCG 11831 36 100.0 38 .................................... CAACGGGCTTCCAGCTATTTTAAAATATTTTCTAAAAA 11905 36 100.0 39 .................................... TGTACCTCTTTCCTTGTCCATTGATAGCATTGGACAGGT 11980 36 100.0 36 .................................... CAGCATCTACAGTAACTGTAGGCTGCGCGGCTACTT 12052 36 100.0 36 .................................... CAGCATCTACAGTAACTGTAGGCTGCGCGGCTACTT 12124 36 100.0 34 .................................... TCTGATAAATACATAATCAATCTCCAAAAAATAA 12194 36 100.0 38 .................................... CCAGGGATTTACTTCCATGGGTTAGGGCATCTATCTGT 12268 36 88.9 64 ...............................NNNN. CTNTGGNAAGTGGAATCAATGGAAACCTTTGGTAGCACCAGCGGACACCCCCAGGAGCTTTCTA 12368 36 100.0 35 .................................... AATTCCTTCTTCAGGAAGTGGGTCGGCACTAACAA 12439 36 100.0 37 .................................... ATCGTAATCCCTGCAACCCAACTCTGGCGAGTTGGTC 12512 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================ ================== 29 36 99.6 38 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : TAGATTTTATCCTTTGTCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGTTAGGTAAAGTTTTAATCTATATGATATTTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACCAGTTATTTGAGCATGAATCAGTTATAATAGAATAAATGGAAGGATTAATTAAGGATTAGTATTGAGATTATTGATTAATGGTTAAAGTGATATTAAAGACAGTAAATTCAGTGATTAACGAAGGGAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : CGCATTGTCTTTAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTATTGATGCTAAGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTTCTGCGCTAAAATATCCTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAAGAAGTTGAACCACAAAAACAGTTAATTGAGTTATCTTTATGAAATCCGTTTCTGGTAAGTCTCTGTGTAAGATTGTTGAACGCTATGGATGGAATCTAAAAAGGATTACAGGTAGTCAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 592-402 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFG01000397.1 Cylindrospermopsis raciborskii CS-506_A scaffold440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 591 36 100.0 38 .................................... AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGT 517 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 437 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 42 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : CGTAATAAGGTTGTTTCCAACAACTTTATTGCGTGATTTTGTTTACCTCGACGTTTGCCATTCTTTCTGATTTTGGAAGACCCGCAGTTTGGACAATGCACAGTAGATTACCTCAATTCATACCTCTATTATGCAACGCCAAAAATCGCTTCTGTTTCGGGAATTTTCTTGATAGGCTTGGTTTTCAGAACTCATTTTAAGGAATTAAAAAAGGCAAAACTATTGAGTTATTAGAGGAAGTTGATTTTCCTGATAATGAAGAGGTATTAGTGGAAATTAGAGAGGTTAATGATTTTTGGTCAGCCTTGCAAGATTTTAAACAAAGAGTAGATTTGGCAAGTCTTGATGATGATACTTTTGATAATTTACGGGACAAGTCAACGGGGAGAGATGTTCTTTTAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3862-997 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFG01000069.1 Cylindrospermopsis raciborskii CS-506_A scaffold500, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================== ================== 3861 36 97.2 41 A................................... AAGCTGCATGAGTCTAACACTGCCGAGGGTCGTAAAGGCTT 3784 36 97.2 35 ........................T........... ACCCCACCAACCCCACGAAATATGCAGCTCCTAGC 3713 36 100.0 38 .................................... TCAGAAATAATTTATCGCTCTACAGACGAGTAAGGTAG 3639 36 100.0 40 .................................... TATCTGGTTACCCGGTTATTTCCCTTTACCCGGTTATTTC 3563 36 100.0 40 .................................... ACGTAAATCTTTTCAGATTCTCCACAACCCCCACATCAAA 3487 36 100.0 35 .................................... TTAATTAATCGCAGGCAGAGCGGTAGCTAACTCCT 3416 36 100.0 34 .................................... AATAAGCTGGTGGTTATTAAAAACGTGCCTGAAG 3346 36 100.0 39 .................................... TAGATGCCAAAGCAGCCGTTAAGGCTTCTAAAGCTGCTG 3271 36 100.0 36 .................................... TTTTATTAAAATTACTGGAACCCGCGCCTCTGACTG 3199 36 100.0 35 .................................... TAATTGCCCCTGCTGTAGAGAACTTATCTTTGATA 3128 36 100.0 38 .................................... GCCCTGAAGTTTCCAGGCTTGGGCGAACCCAACAACGT 3054 36 100.0 36 .................................... CCACACTACCCCCACAACAATGAACACCCAACCCCA 2982 36 100.0 44 .................................... CTCTCAAAATTATATTGCGGCTGTAAAAGGGAAGCAGTAAGGGG 2902 36 100.0 35 .................................... GTTAAACAGTAGGCTAACGGAGAAAGGAGGTACAC 2831 36 100.0 39 .................................... TGTTTGAATTCAGAGAAGTACTACTCAAGATATTCAACC 2756 36 100.0 38 .................................... TTTCCCTTGGAACAAGAAGCTCCTGTTTGTCCCAGGGC 2682 36 100.0 37 .................................... AACCAGATCAAAAAACTGGTTTCTGTTAACCAGTCAG 2609 36 100.0 36 .................................... TTCACAGTATAATGTGATAGAAGCTCGCTATCCTAA 2537 36 100.0 39 .................................... TTGAGCATTACTTTGTGCAACCCACACTTCACCCATAGG 2462 36 100.0 38 .................................... AAAATGTGATTCACAAGGGTATAAGATTCCGGCTATCT 2388 36 100.0 37 .................................... AAAAATATGTCCCTACCCAAGCCCTAAAATTCTCTAC 2315 36 100.0 35 .................................... TCTCTACTACTAATTCCTTTGGTAGTTTTGTTATT 2244 36 100.0 41 .................................... TTATTTATAATCTATGGATAAATAACTTTTTTTTAAAGCCC 2167 36 100.0 35 .................................... TCATAGTTTTGGGAAACTCTTTATGGCGTGACCGA 2096 36 100.0 35 .................................... TTGTTCGATTAAAACATATCTAGGAGAATATTAAT 2025 36 100.0 59 .................................... TTTCTCTAATAGCGGAAGGGATAGGAAAGCGATAAAGGGTCGTAATACCTATTCCNTNN 1930 36 77.8 37 N.N.N..NN..N.NN..................... ACATTAGTAAAGGGCTCCGTCCCATTAAGGTTTGTCA 1857 36 100.0 42 .................................... AGGGAGCCACCTATGAGAAGGTTGGTTTCCTCAGAAAAGTAA 1779 36 100.0 35 .................................... TGAAGCTGAGGCTGTGGCTAAGTCTGTACCTTTGG 1708 36 100.0 38 .................................... TCAGTCGCGATACCTTCCGAGTTTCGGGTCGTCAAAAA 1634 36 100.0 37 .................................... TTGAAGTTATACACAACGATGCCATCGAAACAGGGTG 1561 36 100.0 35 .................................... TTGTACTAAAGGCATTAGACTTGGGTTTTTAGAAA 1490 36 100.0 44 .................................... TCAGAGATTTAAAAGGCAGAATACCCCAACCTTTGCTTTCTAGC 1410 36 100.0 38 .................................... TCTTTAGAAAGACACTGTAAGTTTGACCCTTATAACGA 1336 36 100.0 46 .................................... CTTCTCTAGTAGAAGAATACATAGACCAGGTTGAAGAACGCATAGA 1254 36 100.0 41 .................................... TGTAAAAGACCTCCATGCCCTGGGCATGAGGCAGATAGAGA 1177 36 100.0 36 .................................... TTAATTTCTCTTGCCACTAACACTGTTTCGGTTAGT 1105 36 100.0 37 .................................... GAATACCCTACGCTGACGACGTAGAGTCAGCTAAAAA 1032 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================================== ================== 39 36 99.3 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCCGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCCATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 134-2687 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFG01001060.1 Cylindrospermopsis raciborskii CS-506_A scaffold359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 134 36 100.0 43 .................................... AAACCATATACTATTGTTTATTAAAGTTAATTAACCTAAGCAG 213 36 100.0 33 .................................... CCGGGGGCTTTGTCAATGGAGTTGTACGACTAC 282 36 100.0 37 .................................... ACGGTGAGTCCCCGGACGTACGAACTCTTGTTAACTC 355 36 100.0 34 .................................... AACCATATATGGACTCCTCCCGGAGTTTCCTCTA 425 36 100.0 36 .................................... AGTAGAGGGGGGGTAGAAAGAAGGTTCTAAGTCAAG 497 36 100.0 39 .................................... AGGGGGAGCCGCGCGGCTACCTTCTTAGGATTTAAAAAT 572 36 100.0 39 .................................... TACTCTTGTGCGCCCAGTTGAGCGCATAGGATCGCGGCT 647 36 100.0 46 .................................... CTGCTGAAGTCTATTAGAGTAGATGGTTACAAAAGTAACTAATTAC 729 36 100.0 37 .................................... TACCCCCTCTATAATAACTGACACTATGTAGTATTCT 802 36 100.0 39 .................................... TTTAAAAGGAGCGACAGGGTCAAACTTTAAGGTAGTAGT 877 36 100.0 35 .................................... TATTCTTTGAAAAATTATTTAGTTGGTATCCTCTC 948 36 100.0 41 .................................... AAGACTTTTCGTTAAACAAGAGGTTTATTGTAGGTAAATAT 1025 36 100.0 37 .................................... AAACCCCATCTAAGCAGGGGCTTCGATGGGGTTTTAT 1098 36 100.0 37 .................................... CATAAACTTTTACCAGTAAACTAACTCAACTATAACT 1171 36 100.0 41 .................................... TACCCACATGGGGTAGAAGTGTACCATTACGGGGTCGTTTC 1248 36 100.0 35 .................................... TATTTTCTTAAACAGTTACTCGTTTAAACTTTTTA 1319 36 100.0 40 .................................... TAATTTTCTAATGTTTTTCCTTCGTTTTGCCCCTATAATT 1395 36 100.0 36 .................................... TAGACTCACTTCCCGCTCAGAGTTTGATACTTGGAT 1467 36 100.0 39 .................................... TTTTTCGGCAATCTCTCCAGACCCCCGCAGCATGTTTTT 1542 36 100.0 36 .................................... AGATGACTGGCCCAGAATTGTGCCGTACTAACTGGT 1614 36 100.0 41 .................................... CTGGATTAGCTTTACTGGATGTCAAGCAATTTGACCTAACA 1691 36 100.0 38 .................................... GCTTTGTGAGTGCTGCTACACAATCTAAAAAGAATGAC 1765 36 100.0 34 .................................... TAACAGGGTTTGAAGAAGAAATCATCCTTTACAG 1835 36 100.0 35 .................................... CAAATGGTAGAGTCTCTTAGGGAAAAAGGTAGGAG 1906 36 100.0 38 .................................... CAATAAATTAGTTCGGTTAAGCCTTCGGGCTTAAGAAG 1980 36 100.0 38 .................................... GTAACAGCTATTGAAGAGACTATGGGTCTTCAATATAT 2054 36 100.0 42 .................................... ACTAGATCCACTGGTTTTGATAAATAGTCGAAGATCGACTAT 2132 36 100.0 37 .................................... GAATTATAATGTAGAGGAGGGAAATTGGGGGTTAGAG 2205 36 100.0 37 .................................... CGTGGATAACTACATCCTCTTCAAGAGTTAAACCTTG 2278 36 100.0 39 .................................... TCTGAAGAGTTTTAAGCTCCAATATGTTTTTTTGTGTTT 2353 36 100.0 39 .................................... AGGCTAAAACAATAAATCCAAAAATCTCTTTCTTTAACA 2428 36 100.0 41 .................................... CACAGAGAAATCCTGTGGTATAATCACAGAACGTTCTACCA 2505 36 100.0 37 .................................... TGATACACTTGATAAACGCTGATTTGACTATAAAAGA 2578 36 100.0 38 .................................... AGATCTCAACTCTCTCCTTAGCGATAACGATCTCCCCT 2652 36 88.9 0 ..............................A..GCT | ========== ====== ====== ====== ==================================== ============================================== ================== 35 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : AACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACTAGTCAGGGCAAGGGCTTAAAATGGAGGGG # Right flank : GTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATAGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 2190-393 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFG01000745.1 Cylindrospermopsis raciborskii CS-506_A scaffold76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2189 36 100.0 39 .................................... TTAATGCAGCTCGTAGCTGCTTCTCCTCCACCTTTAAGG 2114 36 100.0 35 .................................... TTCTATGGGTTGGGAAGATAGTGGTCAAGTATCTT 2043 36 100.0 36 .................................... TTAAAAGGAGAAAGGGAGTTTTTTATTTCCCTGTTT 1971 36 100.0 37 .................................... TATTTCCCATTTGATCCAGAAATATATTACTGTGCTT 1898 36 100.0 34 .................................... TTAAAAAATCCGTCAAACATTGTTATCAATCCAT 1828 36 100.0 36 .................................... TTTACAGATTGAAGCCAAGAAAGATTTGAGCAGACC 1756 36 100.0 41 .................................... TTTTAGTAATCGCGTGTTTTGGTTGCTCTCGGGTACTGAGA 1679 36 100.0 40 .................................... AGGAAAGGATTTACTGAATCTGGTAGGGAGTGTTGGGTAA 1603 36 100.0 36 .................................... TTTTGTTTTTCGGTTATGAGCTACAAAGAGTCAGAT 1531 36 100.0 41 .................................... ATATTTTGACAGTTGAGAGCGAGTCCAATTGCGTTCCTCTA 1454 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCTTGAG 1380 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCTTGAG 1306 36 100.0 39 .................................... ACCCGCAATATCCAAATCTATCAATATTGATTTTATGTG 1231 36 100.0 36 .................................... GGGACTACATCTTTGTATGTAGGCTCTAACACGAAA 1159 36 100.0 41 .................................... GGCACGAAGCCAAGACACTGCCTCCATTCGGCAGCGGTTAT 1082 36 100.0 35 .................................... GCCTCTAACCAGGCTTCAAAGATCCTGGTTACCAA 1011 36 100.0 39 .................................... CTCGTATGTATAATGATATCCAACAGATAGTGTATTCAT 936 36 100.0 34 .................................... TTAAAAGGGGAATAGGGGGGGTATAAGCGGGTTA 866 36 100.0 37 .................................... TTAATGTTAATGAAATAGTCGATCTTCGGCCATTCAT 793 36 100.0 38 .................................... TCTATATATTCTTTTCTTAAACAACATTTTCAAGAACT 719 36 100.0 39 .................................... ATTTAATAATCATACGGGTTACCGCTTAAACAAATAACG 644 36 100.0 35 .................................... TTAAATACAAGCCATCTGCCCTCGAACGGGGTTAT 573 36 97.2 37 ................A................... TGGGTCTACCGCCCGCACAAGCGGAGGGGGGGGTAGG 500 36 100.0 36 .................................... AAGTAAAATTTTTAAAGGTAAAGAACACTTTAGGGA 428 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 25 36 99.9 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : AAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGG # Right flank : CTTTTTAAGCGTTCATTACTACTGTTATTTCCCTAGCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACAACCCACTCCCACAGCCAATCCGCACCCCATCCATTAATCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACACAATTTTTTCTCGCTTAATCAGCTCATCTTCATTTTCAAGCGCGATTACCTCTGGGAAGTGGAATTAATAGAGCTGTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGATCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //