Array 1 19209-20301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIW010000004.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-066 tig00000024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19209 32 100.0 34 ................................ TACACCCGTAGGAATGTAATTGAATAGATAGCGT 19275 32 100.0 33 ................................ GAGACATCACAACTGCTAAAAAAAGCCATTGAT 19340 32 100.0 34 ................................ AAACGACCTCGTCCAAAAGTCAAAAAAAACGAAA 19406 32 96.9 35 .......T........................ AAAGTAAGAGTCGCTCTCATGTTTTAAGACACCGC 19473 32 100.0 34 ................................ GTCAAAACTGGTCTTTGCTTGGTCCTCGCTATTG 19539 32 100.0 35 ................................ AATAACAGCACTTGTAATTGAATCATAACGAACCC 19606 32 100.0 33 ................................ GTTGCCTACGTGAGTACATCATTTATACTTCCT 19671 32 90.6 34 .........CA.A................... AAAAATTTATTGATAAAATACTGCTGACCCTTAC 19737 32 87.5 34 ........TCA.A................... TTGATACTAACTAATTTTCTTTGTTTGTGAATAG 19803 32 90.6 33 .........CA.A................... AAGCTCTTTATCTTTAGCTGCAAGGACTTCTGC 19868 32 90.6 35 .........CA.A................... TTTAATGCCTGCGGATAAAGGCATAATAAAAAAAA 19935 32 90.6 34 .........CA.A................... TACGATTATCATTTAAATACTAAAAAAACTACAG 20001 32 87.5 36 ......A..CA.A................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAG 20069 32 90.6 35 .........CA.A................... TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAG 20136 32 100.0 35 ................................ TTTGGCATGCCTCACATCAGACTCATGTCTAGCAT 20203 32 100.0 35 ................................ CCGACACTGCGAACTAATCATTTGTGACTCCTTTC 20270 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 95.6 34 GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Left flank : TAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACACTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCA # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGCCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCCATACGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 2 842667-842499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIW010000004.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-066 tig00000024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 842666 36 100.0 30 .................................... TTAAGGGAGATATTGAGATACACGATAGCT 842600 36 100.0 30 .................................... TGCTTCATTGCTGATGTTAACAACGACTGT 842534 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 95.4 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTAATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAAAGGGGGGTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGATAAGATACGCTTGGTGTGGTAGTTGTTGAGGAACTTCCCCTTACTTTTATCTCCTTATCTTACTATTTGCAGAAAAGTATTATAGAACGAACTGGTATGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAATGTTACGCAGCTTAACTAACTTTTTGATTGTGGCCCTGCGCTTGCCATTTTCTGTCATGCCGAGAGTTTGTTGGTTAGTTCTTAGTAGCTCCGCAAGT # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //