Array 1 7933-8116 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYO01000017.1 Ruminococcus sp. AM28-13 AM28-13.Scaf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================ ================== 7933 23 100.0 32 ....................... ATTACGCTCAAAACGAGTAATTACTCGGGAAT 7988 23 100.0 31 ....................... TAATATCTTAGACATTATTTTTGTAAGGTAA 8042 23 87.0 29 T.A....T............... TAGTATTTTGAGCATAAAAAACATTAAAA 8094 23 95.7 0 ..........T............ | ========== ====== ====== ====== ======================= ================================ ================== 4 23 95.7 31 AATTACAATTCATAATGAGATAT # Left flank : TAGGTTCGCCGCCTAAGAGCGTAAGTCCTTTTATATAGCCCTTTGAGAGGGCGTTAATTATCTCGTCTGCGGTGGTATCTGTGAAAGGCTTGCCGTAGTCAAAGTTCCAAGTGTCAGGCTGAAAACAGCCTTTGCAGTGGTGTCTGCAACCTGATACGAACAGCGTGACCCTCACTCCTGATCCATTGGCGATATCGGTTTTCTTTATCTCACAATAATTCATTTTCCGCTCCTTTCATACATACAACGCAGGGCAATACGCTTTTGTATTGCCCCGATAGTTATATGCTGTTTGCTGTTTTATGTCAATAATAATGTTCATTATTTTCGGATTTTGCAGTTTTGAGTTTTTGAGTTTTCCTTGCTATAATGTTCATTTTTTTGACGAGTTTTGATTTTTGAACTTTTGAGTTTTAACGGCTATAATGTTCAAAAATTTTCGATTTTGCTAGAAAAAATTTTTGGGTTTTGGGTGAAATTGTAATTTTACAAATGTGTTT # Right flank : TAATAGATGTATACTGTATCTCATTATCTTCTACAGAATATTATAACACTTTTAAATGAGAAAGTCTATATATTTTGCGATATTAATATTAATGCAGCCTATTAAAACTTCATATTTATATCGCAAAGCTTCTTGTAGCGTTCTTCACTTAGCTTTCCTATGTTGTAGTTCCTTCTTTGCAGTACCACCCAAACGCCAAGTTTTTCACCCTCAAAAATAGTTCGTTTTGTTATATCTGAACTTCCGTTATTTTGTTGTATATATCTTTTATATTGTTCGTATCTTCTTTCCCATTCTGCAGCTAATGGATCAAGTGTTATTCCTAATGATACAAGAGCGTCTTCTTGTGATCGAGTCAGTTTACCCGCCTTATATTTGTCTCTCTGCGATTGCAACCAATTGCCTAGAAAGACACCTTTATAGTGATCACGCTTTGGTATATTGGCAGTGCCACATTCCTCTTTGTATTCACAGAGTAAGGCATACCCTTTTTCCCAAGA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTACAATTCATAATGAGATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 369966-376188 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYO01000001.1 Ruminococcus sp. AM28-13 AM28-13.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 369966 32 100.0 33 ................................ TTACCGCTCGGCAGCGTGGAAGAAGTGTCGCCA 370031 32 100.0 33 ................................ TTTGTGCAAAGCGAAGTGATGTCACAAAGGACA 370096 32 100.0 33 ................................ AAACAGCCTTGACGGTTTGGACGTTCACTGCGG 370161 32 100.0 34 ................................ ATTTCCCGAGCCGAACATAGCGGTGAGGTCATAA 370227 32 100.0 36 ................................ CACCTTTGCCGTTGAAATCATATTGCCATTTGACAT 370295 32 100.0 34 ................................ TCCTTTTCTGTCCTGAGGACTATATCCTCAACAC 370361 32 100.0 34 ................................ TGACCAGCGCAGGCAGATTTTCTGTCAACGAATC 370427 32 100.0 34 ................................ TTATTGCACGGCTCAGGCAGACAGAGAGCGGTCA 370493 32 100.0 33 ................................ GCGTCTTTGGGAACTGCGTTCACACCTGTTATG 370558 32 100.0 34 ................................ GATTAGAACTGGTAGTCCCATGTTTCATTCCTCC 370624 32 100.0 34 ................................ CCTTGATCGCCTGCTCCAGCTCCTCACGGATTGC 370690 32 100.0 33 ................................ TGACGTGCTACTCGTCTTTCGGCCGTGAGAACT 370755 32 100.0 34 ................................ CGATGAAATCGTAATTTTCGGAGACCATGAACAC 370821 32 100.0 33 ................................ GGCATAGTTGTCACCCTTTTGGTTTCGGGCATA 370886 32 100.0 35 ................................ GACGCTGACGCTGAAAAGGGTGACAGACGTGGACG 370953 32 100.0 33 ................................ CTATGATTTATAGAACGTATGTTCGATAAGCCT 371018 32 100.0 33 ................................ ACCAAAAAGAGCAAGTAATCATGATGATAAAGG 371083 32 100.0 34 ................................ TTATTGCACGGCTCAGGCAGACAGAGAGCGGTCA 371149 32 100.0 36 ................................ CTTTGCACATATCTGACACGATACTGTCTGCGCTGA 371217 32 100.0 34 ................................ ACAGACAGCGAAAAGCGGTTGACTATCGGCAGCG 371283 32 100.0 34 ................................ GATACAGACACACCACAGGGAAGATTTATGTTGA 371349 32 100.0 33 ................................ GATACTAAGGGGCTTAAACGTGGGGATAACAAT 371414 32 100.0 35 ................................ TTCAAGGGTATATTAGAAATTAATGAAGATGTTAT 371481 32 100.0 34 ................................ TTTTTTAATTCGAGATTTTCCGTTTTTGTCTGAA 371547 32 100.0 34 ................................ TTGCAAGTGTTTTTCTTTAAATGCGTGGGAGCGT 371613 32 100.0 33 ................................ AGATATTCCCTGTTAGCTAATTAACACACCGCC 371678 32 100.0 34 ................................ ATTTTTTTTCCACAAGTTGCTACACAATTCTTTA 371744 32 100.0 33 ................................ TTAATTGCTCATTTGTTAAACCACTTGCAAAAT 371809 32 100.0 33 ................................ TTGACAATGAGGTTATCGAGAATTCAACTGTAA 371874 32 100.0 36 ................................ TTTGCAGCCTTGGTGGCTTCCTCCAATGTGTCAAAA 371942 32 100.0 33 ................................ CGTTATCATTCAAACTATGCGTTGCATTGGCGG 372007 32 100.0 35 ................................ TAGAATTGCAGTATGATATGACAGTTGAAGACCTG 372074 32 100.0 37 ................................ ACTGCTGTCTATCTTTGCCGTGTCTAGTCTGACATAG 372143 32 100.0 34 ................................ TGTATTTGCCGCCGTCGGTCAGTTCGACGTGGTG 372209 32 100.0 34 ................................ AAATTTGTACATATTTGTACCCAATTTGGGGTTG 372275 32 100.0 33 ................................ GCAGTTTTCGGCTACATTTTCGCAATGGAAATA 372340 32 100.0 34 ................................ TCAACCGACAAATCGTCACGAAAAGCGAAGCAAA 372406 32 100.0 34 ................................ ATTATGATTTGTTTAATACTGGAAAATTACCGTT 372472 32 100.0 32 ................................ GCCTTTTTTCATGTTTGTAAGTCCTTCGCTAT 372536 32 100.0 34 ................................ GGTTTCTGCTGTCAGCGGAATTTGGAGCGTAGTG 372602 32 100.0 33 ................................ CCCTTTGACGCTGACGATTGCAGTGCGATTCTA 372667 32 100.0 33 ................................ AAAAAACTGAGAATGGCGAAAAACCTCACGCAA 372732 32 100.0 34 ................................ GACCTGAATTTGTGAAACTGCGATACTGTCTCCG 372798 32 100.0 33 ................................ TGCTGACAAGTTCGGTGAACGTGATTTTTACAA 372863 32 100.0 34 ................................ ATGCGGTATGCGAGCAGGAGGTAAAAGGCTACTT 372929 32 100.0 33 ................................ TTTGCATAGGTTTTGCAGGGGTTTGCAGTGCAA 372994 32 100.0 34 ................................ GCGTTTTTGAGGTAGAATTAACTAACGTTATTGC 373060 32 100.0 35 ................................ ACGGGGTATTTTTATGCCCTTATACTAATAGCATG 373127 32 100.0 34 ................................ CCTCCTAAAACGTTACCGTCACATTCAACACTGC 373193 32 100.0 33 ................................ TTTGCTACCGCCTGATACCCATGAACATATGGG 373258 32 100.0 35 ................................ GTATACTGTGGTTGAGTGCCCTGAGTTTGAGGAGG 373325 32 100.0 34 ................................ ATAGCCGACTTTTGGTTATAGGTGAGCCACAAGC 373391 32 100.0 34 ................................ TCAGGCGTGACATGGTCATAGGGTCAGCCATTAG 373457 32 100.0 33 ................................ TGTGTTCACAGTTGGCAATGACTTGTTCAAGAG 373522 32 100.0 36 ................................ TGAGTAGCCCCACTTGAACGTTGAAAAGTCGCCCAC 373590 32 100.0 35 ................................ ACATAAATGCCAGGTATGTCCGCCCAGAACTTCTC 373657 32 100.0 35 ................................ TGGCGCAAGCTTGTCCATTGGTACGCTGTGACCTC 373724 32 100.0 35 ................................ CCTTTGAGTGGTGGTGGCAGTATATGACCGCACAG 373791 32 100.0 34 ................................ CTTCTGCAATATCTGGCACAGAAGCCGCATTGAC 373857 32 100.0 35 ................................ GCTCCGCCACTTATTGACGGTGTTCTCAGACAGGG 373924 32 100.0 33 ................................ GCCGATAATTTTTATAACATCAACCGTTTCTTT 373989 32 100.0 33 ................................ TGTTTTCCAGCAAGAGGACAGCCAATGCAACCT 374054 32 100.0 35 ................................ CGCACGGCATTCGTGACAGTACACATGATTGCCGA 374121 32 100.0 33 ................................ TCTCAAGCCATTTGCATGATTCGTCATAGTGTT 374186 32 100.0 34 ................................ ATCTGATTGCCGCCATTGTATACCTCTGTGCCTG 374252 32 100.0 33 ................................ TGTAACATTCGGAGACTTTATCTGAGAGAGTTT 374317 32 100.0 33 ................................ GTCACGAGCCTATCGCCGCTGGATCTCCAGTAA 374382 32 100.0 35 ................................ GATACCGATTGAGGTTGTCGCGGAATTTGTATCAA 374449 32 100.0 34 ................................ GGCTATGACGCACCTACATATGTTAAAACCATGG 374515 32 100.0 34 ................................ CCAGACAAGGCAGGATATCAATAGAGAAATACGC 374581 32 100.0 33 ................................ ATCAAAGATTGATTTATCCAAAATCGACTTTGA 374646 32 100.0 35 ................................ CCTCTCGTTATCTGTGAGGGAGCGTTTGACGCTTT 374713 32 100.0 33 ................................ CGCCGTTCTGATAACCACCAGAACGGGGAGCAG 374778 32 100.0 34 ................................ GTTGCCTGCATGGAGCTATCAGCTGACATAATGC 374844 32 100.0 32 ................................ AAGGTGATATTATAATAACAGAAACAAAAACC 374908 32 100.0 34 ................................ TCAAGAAAAATCACCGCAACGTAAAGCCTGAACA 374974 32 100.0 33 ................................ TCTAAAGAGCAGAACATATTCTGGGCAACCCAC 375039 32 100.0 34 ................................ GAATTGTCTGGAGGTGACAACAATGACGGATAAG 375105 32 100.0 33 ................................ GTTGAGAAGTGGCACGCTCAGTTACGCCCCGAG 375170 32 100.0 34 ................................ CAAAAGGTATACACGCAGTTTTCAAAGAGCAATG 375236 32 100.0 33 ................................ TACTTTTTCAGGGGGAGGTAGTATAATAAGGGT 375301 32 100.0 34 ................................ ATTATACTACCAATTGTAACAATAATAAAGTATA 375367 32 100.0 34 ................................ GCTCCGCAGGAATGTTGTTCAGTGTGGCGGTTTT 375433 32 100.0 33 ................................ GCAAGGTGTGTGGCGGATAAACACACCCCATAA 375498 32 100.0 33 ................................ TTCTTGAACACAAGTTTTTGAAGGGAAAAATGT 375563 32 100.0 34 ................................ AAATCATCACGCATAGCCGCATTTTCAGATAATG 375629 32 100.0 33 ................................ GATTACTTCCACCGCCTGCCACATTTAGTACAA 375694 32 100.0 33 ................................ TTTTGTAATCTCGTCGCTGAGCTTTTTGATGAA 375759 32 100.0 35 ................................ GAATGTGGCGGCATCGGTGTAGGCGGTGTCTCGCA 375826 32 100.0 34 ................................ CGTAAAAGTTGCTGTTGACGGGATAAACGATACA 375892 32 100.0 35 ................................ ACTGATACATCTTTTGAAGTGTAGCCGAGAGCCTT 375959 32 100.0 33 ................................ GCGTGAAATAGACAACATCACAACCATAGTGTC 376024 32 100.0 34 ................................ CTTCCTCAGTGATGATGGTCTTCTGGTGTGTGCC 376090 32 100.0 35 ................................ GCAGGGATAGATGTAGTGATGTATCTTGTGTTGAG 376157 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ===================================== ================== 95 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTTGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGAAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCTGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTGTGAACGCACAGTGAACAAAATCAAACCGATACCCATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TTTTCCCGAGAAATAGTTAAGCTAGCTTAAAAAAATATATTAGTTTAAAAGGAATGTGATAATATGAGAGAAATGCCAATATGGTGGGGTTATGCGGAATTTGATGATGACGGATTATGCGGCATATCCCCAAATGCACCGGACGAAGTAAAGAAAGCTTACGAAGATTATTTAGCTGAAGAAGAAGAGGCTAAATCAAAAGGCATAAAAATTTAATAATTTTTACTGCTCCGCTACGGCGAGGCGGTCACGCTCCACGTGAGCGTGTGAGTCAATTTTCGTTTCAACGCAGGACTTAGGGTGTGCGTTATCCGCTCAGACCACAGCAAGTGCTGTGCGTGATGTTCAAAGCTTGCAGTAAAAGACGTTTATCCTGAGTTTAACTGGAGAAAAGGGGGCTATGTTCATGGCAGAAGAAAATGATATTCTCACAAAGTTAAAAAAAGGCGAAAAAGTTGAGTGTCCTGTTTGCCATAACGGCTACTATGTTCCTGTGAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //