Array 1 247458-248827 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATH01000029.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_t6 t6_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247458 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 247519 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 247580 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 247641 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 247702 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 247763 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 247824 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 247885 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 247946 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 248007 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 248068 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 248129 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 248190 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 248251 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 248312 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 248373 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 248434 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 248495 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 248556 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 248617 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 248678 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 248739 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 248800 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265087-265788 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATH01000029.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_t6 t6_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 265087 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 265149 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 265210 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 265271 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 265332 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 265393 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 265454 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 265515 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 265576 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 265637 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 265698 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 265759 29 96.6 0 ............T................ | A [265786] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //