Array 1 162333-160551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTO010000002.1 Salmonella enterica strain S27 NODE_2_length_399890_cov_114.206669, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162332 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162271 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162210 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162149 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162088 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162027 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 161966 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161904 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161843 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161782 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161721 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161660 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161599 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161538 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161477 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161416 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161355 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161294 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161232 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161129 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161068 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161007 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160946 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160885 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160824 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160763 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160702 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160641 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160580 29 96.6 0 A............................ | A [160553] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179957-178464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTO010000002.1 Salmonella enterica strain S27 NODE_2_length_399890_cov_114.206669, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179956 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179895 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179834 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179773 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179712 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179651 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179590 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179529 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179468 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179407 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179346 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179285 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179224 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179163 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179102 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179041 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178979 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178918 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178857 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178796 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178735 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178674 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178613 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178552 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178491 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //