Array 1 8980-10106 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPX01000016.1 Escherichia coli strain 620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8980 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9041 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9102 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9163 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9224 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9285 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9346 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9407 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9468 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9529 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9590 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9651 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9712 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9773 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9834 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9895 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 9956 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 10017 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10078 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48023-49455 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPX01000020.1 Escherichia coli strain 620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48023 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 48084 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 48145 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 48206 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 48267 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 48328 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 48389 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 48450 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 48511 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 48572 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 48633 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 48694 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 48755 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 48816 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 48878 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 48939 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 49000 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 49061 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 49122 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 49183 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 49244 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 49305 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 49366 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 49427 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //