Array 1 2436-4744 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYK01000262.1 Xanthomonas fragariae strain GBBC 2088 isolate GBBC 2088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2436 28 100.0 32 ............................ ACTCACGCCCCTGGAATACGCACAGGCGCATC 2496 28 100.0 32 ............................ TTATGCAGCCTTGGGCGGCTGCTGGACGCCCT 2556 28 100.0 32 ............................ GTCCTTGTCGTCCTTGCCATTCTCCGGGTCGT 2616 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 2676 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 2737 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 2797 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 2857 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 2917 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 2977 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 3037 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 3097 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 3157 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 3217 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 3277 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 3337 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 3397 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 3457 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 3517 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 3577 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 3637 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 3697 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 3757 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 3817 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 3877 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 3937 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 3997 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 4057 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 4117 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 4177 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 4237 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 4297 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 4357 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 4417 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 4477 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 4537 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 4597 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 4657 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 4717 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTCTGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 260-466 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYK01000280.1 Xanthomonas fragariae strain GBBC 2088 isolate GBBC 2088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 260 28 92.9 32 .............T.C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 320 28 96.4 32 .............T.............. CATTTGATTTTAATGGACTCAACAAGCCTCTC 380 28 100.0 31 ............................ TATCGTCGCGCCACGCATAGCAGACCGGTGC 439 28 78.6 0 A..........TCT.......G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCACTGCCGCGCAGGCAGCTCAGAAA # Left flank : GAGACAGGGTCCACCTCGGCGCGCTGCACCACGCCAGGCTTGCCGAACTTGCGCAGCCAGGCGTAGAGGCTGTGCGTGGTGAGACCCAGTCGCTCCGCGACTTCTGCCACCTTGAAACCACGATTGGTCACTTGCCGGACCGCCTCGATCTTGAATTCATCCGTATACCGCTTGCTGCTCATGGACACCTCCGAATTGACCATTTTCCATGGCCTTGAGATGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //