Array 1 121884-122034 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809170.1 Corynebacterium sp. HMSC064E10 Scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121884 29 100.0 32 ............................. CGATAAGGCGCTGGGCGAGTTCCTGGTCAAGA 121945 29 100.0 32 ............................. TGACCCCACACCCACTGATAGTGGCGGGCGAT 122006 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 CTCTTCTCCGCATACGCGGAGGTATTTCC # Left flank : TTCATCGAAGGGGCATGTTGAAAGAGATGATTGGAGTATTAATGGAGATTCTCGAACCGTATCTGCCAGAAAGAGACGATGACCGGTTGATTGCGGGACGGGGCGACGAAGTGGCTGGGCATACACAGTATGGAAATCGACCCCAGTAACAGTAGGTGCGTCCCTTATGTTTTTGGTACTTACTGCATCTAATTTGCCGGAACATCTCCGAGGGTATCTAACTCGTTTCTTAGTTGAAGTTGATACTGGAGTTTTTGTCGGTAACGTGTCGAGACGCGTTCGTGATAATCTATGGGGCCGGTGTAGCCGAGCTATAGGTGAGGGACGTCTAACGATGATTAATAATGATCCCACCCGAGAGCAGGGGTTCGCCGTAAATACGATGGGGAGTAATCGCCGAGTGATTCAGGACTTCGATGGTCTGTTGCTGCCTGTGACCTTATCTGCCGAAACTCGCGGACTTGAAGAAACTTCTTCGTAAAAACCGCAGGTCGGGAACT # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCATACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 1-640 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809171.1 Corynebacterium sp. HMSC064E10 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. TACCGCTAGCGAGGTCGCGGAAATGGTGCTCG 62 29 100.0 32 ............................. AAATCAATTCAGAAAGTCTACGCCGACGCACT 123 29 100.0 32 ............................. CCCGACGGACTCGGCCGCGCCATTCAAACAGC 184 29 100.0 32 ............................. ATTGTCATCACGGTGGATAAGGACGGTTCCCG 245 29 96.6 33 ............................A CGCTAGTCACCATGGGCCTATGAGCTTCATCGA 307 29 100.0 32 ............................. AATCTCACCTGACGCGGCAGCCGGGAAACTAG 368 29 100.0 32 ............................. GCGCTGGCCCTCCCGTCGCGGGCGGCGAGCAT 429 29 100.0 32 ............................. GTGATGGATGAGCAGCTGCGTGGCGTGATTTA 490 29 96.6 32 ............C................ GCGGCCCTGTTCGGCTACACTGCGGCCATGGT 551 29 96.6 32 ............C................ ATCGCCACCGCCGCGAAACTGCTAGGGCGCAA 612 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 CTCTTCTCCGCATACGCGGAGGTATTTCC # Left flank : | # Right flank : CGTGTGGCGGGCGTTGCAGATTCCGTTTGCTATCTCTTCTCCGCATACGCGGAGGTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTCCGCACACGCGGAGGTATTTCCGCTATCGCACAGATTCCCGCAGGGTTCAGCCGCTCTTCTCCGCACACGCGGAGGTATTTCCATAACGCTGCTTGAACGCCGCCCAGTACTGCGCTCTTCTCCGCACACGCGGAGGTATTTCCGGAGCACCGTACCTAGTCGGCGATAACGGCCACTCTTCTCCGCACACGCGCAGGTATTTCCTGGCAAGCCTTCCTCCGCGACCACGAGCAGGACTCTTCTCCGCGCACGCGGAGGTAGTTCTCAGGTACCAAGCGTCAAGCTCGCCACCTACCTTGTGGCCCCAGCCTCAACCCCCTATCGCTTCCGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCATACGCGGAGGTATTTCC # Alternate repeat : CTCTTCTCCGCACACGCGGAGGTATTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1073-798 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV809171.1 Corynebacterium sp. HMSC064E10 Scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================== ================== 1072 31 83.9 30 A...C............C...........TC CTGCTCGTGGTCGCGGAGGAAGGCTTGCCA 1011 31 93.5 30 ..........G..................T. GCCGTTATCGCCGACTAGGTACGGTGCTCC 950 31 100.0 30 ............................... CAGTACTGGGCGGCGTTCAAGCAGCGTTAT 889 31 100.0 30 ............................... GCTGAACCCTGCGGGAATCTGTGCGATAGC 828 31 90.3 0 ............................NNN | ========== ====== ====== ====== =============================== ============================== ================== 5 31 93.5 30 GGAAATACCTCCGCGTGTGCGGAGAAGAGCG # Left flank : CTGGAGCTGCCTTTTCGCGATGATGCTTTTGACCTGACGTACTCGTCGAACGTTGCCGAGCACGTACCCGAGCCATGGACGATGGGTGAGGAAATGCTGCGCGTGACCAAGCCGGGCGGGCTGGTCGTGTACTCGTACACCATTTGGTACGGCCCGTTCGGTGGTCACGAGATGGGGATGACGCATTACCTGGGCGGCGACCGCGCGCGGCGCATGTATGAGAAGAAGCACGGCAAGCGGCCGAAGAACTACTTTGGCGAGTCGCTGTTCAAGGTCGGTTGCGGTGAAGGGTTGAAGTGGGCGCGCGCTGCGGCGGAGGCTGGTGACTGCGAACTGCTGGCCGCTTTCCCGCGCTACCACCCGTGGTGGGCCTGGTGGATGGTGCACGTGCCGGGGCTGCGCGAGTTCGCGGTGTCGAACCTGATGCTGGTGCTGCGGAAGCGATAGGGGGTTGAGGCTGGGGCCACAAGGTAGGTGGCGAGCTTGACGCTTGGTACCTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATACCTCCGCGTATGCGGAGAAGAGATAGCAAACGGAATCTGCAACGCCCGCCACACGGAAATACCTCCGCGTGTGCGGAGAAGAGTTGCGCCCTAGCAGTTTCGCGGCGGTGGCGATGGAAATACCTCCGCGTGTGCGGAGAAGAGACCATGGCCGCAGTGTAGCCGAACAGGGCCGCGGAAATACCTCCGCGTGTGCGGAGAAGAGTAAATCACGCCACGCAGCTGCTCATCCATCACGGAAATACCTCCGCGTATGCGGAGAAGAGATGCTCGCCGCCCGCGACGGGAGGGCCAGCGCGGAAATACCTCCGCGTATGCGGAGAAGAGCTAGTTTCCCGGCTGCCGCGTCAGGTGAGATTGGAAATACCTCCGCGTATGCGGAGAAGAGTCGATGAAG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGTGCGGAGAAGAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.10,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //