Array 1 1142570-1140717 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019831.1 Leptotrichia trevisanii strain JMUB3870 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1142569 29 100.0 36 ............................. TGAGAATATATAATTTAGAAAGGAAATATTGTTATG 1142504 29 100.0 36 ............................. CAAAGTCTGTGGGAATTTCGGATACGCAATTATACA 1142439 29 100.0 36 ............................. TTTATAATTTTTCTGAAAAAAATAAACATCTTTTCG 1142374 29 100.0 36 ............................. CGTCTTTCGGAATTACTAAAAATACTTCGCTTGGAG 1142309 29 100.0 36 ............................. CGCTTTGCAAAGAAGTTGTTATTTCGTTCCAACTCC 1142244 29 100.0 36 ............................. AAATCCAGTCCAAAAGCCACGTCTAAAGAAAAATCT 1142179 29 100.0 36 ............................. AAGCCTTTATAATGGGGCTAGAAATCTATAATAAAC 1142114 29 100.0 36 ............................. TTTTACATCTTCGTATATTTCTTTGAGCGGTGTCAT 1142049 29 100.0 35 ............................. TAAAAAACAAGCAAAAGGAACAGTAGGTACAAATA 1141985 29 100.0 36 ............................. TTTCTCTTGACATATTAATCGCTTCTGTTTCTTCTT 1141920 29 100.0 36 ............................. TAGTAAAGATTTTGTAAATACATTAATTAAGTTAAT 1141855 29 100.0 38 ............................. GTAGAAAATGCTCCCAGCAAAATCTTTTCCGAATCTTG 1141788 29 100.0 37 ............................. TCGTATCAATATAACTCGATATAACGCAATCTTTTAA 1141722 29 100.0 36 ............................. TTTTCGTAATAATATCCTGATCCAAAACTTTCAACA 1141657 29 100.0 36 ............................. TTATATTCTTGCCACTGTGCTTGATATAAAGTTTCT 1141592 29 100.0 36 ............................. TTTTTCCTTGCTTGTTTTATTTTCCAATACACCATC 1141527 29 100.0 37 ............................. CTCGTCAAAAAATTCAATTCTATCTGCATATTGTTGA 1141461 29 100.0 37 ............................. ATTTCATTACAATAGGATTTATTTCATCTACATTAAA 1141395 29 100.0 36 ............................. ATCCTTATCTTTTTTCATAACTTCACTTACAAATTC 1141330 29 100.0 36 ............................. ATCCTTATCTTTTTTCATAACTTCACTTACAAATTC 1141265 29 100.0 36 ............................. CTTTGATAACTTAATTTAATAACTTTTTCTGTGTTA 1141200 29 100.0 36 ............................. TTAATTAAAACTTGTTGGGAAACGGAAAAATTATAT 1141135 29 100.0 37 ............................. GAAGGACGGTATAGGCTACTTGGAAATATTAAAGATT 1141069 29 100.0 37 ............................. GCTGGAAAACGTGCAATCAAGTTAAATGATGATGATG 1141003 29 100.0 36 ............................. CTTTCAATTTAACATAAGTATCAATGTATTCAAACT 1140938 29 100.0 36 ............................. TTAAGCTGTTCGCCGATAAAGTTTGATATTCCCTTT 1140873 29 100.0 35 ............................. GTGGCTCTGTAATATAAGTTGGAGATATTGCAAAG 1140809 29 100.0 36 ............................. ATTTTGGCTCAAAAAATAGCAGAATCAATGGGAGTG 1140744 28 86.2 0 ..........A...T........-....G | ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.5 36 ATTTTAATAGCACAATTTGTATTGTAAAT # Left flank : AGCTGACCATGTATAATTTTTCTGTTTTGCAGATCCAAAAAATTCTTCAAAAATTTCATTATCACATTTTTTCAGTCCTGTTTTTAGGACACATAAAATTTTTGATCTCCAATTTATAGGAAAGCTGTTACCTTCTGTTAATTCAATATTAATCTTAAATCTCATTTTCTTATTATACCTTTCTTTCCATTATTTTTTTCTTTGAAATATAATAATATATTATATCCTATTTTTTATAAAAGTAAATACTTATATAATAAACTTTTATTATTATTTTATAAATAGTTTTTTAGATATTCAATATATTTAATCTGTCGATGTTCAATAACTAAAAAAAACTTGTATATCGACAGATTCCTAAAATTACTGATTTTTACTGATTTTCTTAAATATTTTATTTTGAAAATAAAAAATCAGCTTTTAAAATTTTTGGAAAAAATTAGGTATCGACAAAATTGTGAAAAAATGATATTATATTTAGGGTAACTAATAATGATATG # Right flank : TGTTTGAAGATATATTTAGTTATATATTTTAATAACACAAATATTCCATATTTAAGAAGCGGAGAATGTCTGCTCTGAAGGAAATATCACAAAGTAAGATGATTCAAAAAAGTGATCAAAAAAGTTTTATTATGATATTTAATGAATTGCCTCTAATTTTTTTTACTCTGTCGGCATCTTTTTTTATAATAGACAAAAAACATAATAAATGGTATAATAAGTAAGTTTTAATAAAATAAAATATTGAAATTTTAGGAGTGAGAAAAATAGTTATAGATAAAAGGAAAAGCGTAATGCTTGTTATGACTTGTATTCTCTTTATGATGACTTATTCGAGCCTTTTGGGGACACCTAGTTTTAGCCGTAAATTAAGTGTTTTTGTGGATGAGAATAATTTGAGCCATGAGGATATTCGGGATTTGATTGTGAAAATTAATCAGATTGAAAGCGTAAATAACAGACGATTGACACAGGAACTGAAAAAAATTGGGAAACGTAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATAGCACAATTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1151601-1153842 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019831.1 Leptotrichia trevisanii strain JMUB3870 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1151601 29 100.0 36 ............................. TCCAATTAGGGTGGTTAGATTATAACATAGAATATT 1151666 29 100.0 36 ............................. TTGAAAGAGGCTAATGCGGCAGTTATAAGAATCAAT 1151731 29 100.0 36 ............................. ATTACTTGAGTTAGGAATTGAGCATAAGGACAAATA 1151796 29 100.0 36 ............................. GTTTTCGTTAGAGTTTTCAGGGACTTCATTTCTTCC 1151861 29 100.0 37 ............................. GTACACCATTCATAACGAATAGGCATTTTTCATCAGC 1151927 29 100.0 36 ............................. ATGGAAACAGTTTATGCAATGCTTGGTAAAATGAAT 1151992 29 100.0 36 ............................. GATGATGTTTAGAACACAAGCTCATAAATGGTGTTT 1152057 29 100.0 35 ............................. TTTCGTTTCCTAAATCATCAAAAATAACTAAATCA 1152121 29 100.0 36 ............................. CTCTGATTTTCCTATCCATTATCCACCACCTCTCCC 1152186 29 100.0 36 ............................. TTATATATGCTAGAGTCAGCACAGAAATGCAGGAAG 1152251 29 100.0 36 ............................. CTATTTTACTTTTAACGGTTTAAAAGCATTTGGTCT 1152316 29 100.0 36 ............................. TCAAATATATTGAATACGGACCAGTTCATTAATTAT 1152381 29 100.0 36 ............................. TAAAAATTTATAAATAAATTTAAATCATATTTATTA 1152446 29 100.0 36 ............................. TTTTTATCGCTAAATACTATTTTTATACAATTTTCT 1152511 29 100.0 37 ............................. GAACATTGATAGAGAAATAAAATAACTCTTTACAAAT 1152577 29 100.0 36 ............................. TGCTACTGTTAAAATTGAACTAATAGGAGGATTGAA 1152642 29 100.0 36 ............................. TAAAAACAAGGCTTTAGAATACGGGGGAGTAGATAA 1152707 29 100.0 36 ............................. CTCCTAAATAATCTTTTTGTTTATTGTTTGCAGGTT 1152772 29 100.0 36 ............................. TTTGATTTAGATAAAAGGTTGCAGACAATTGTAATC 1152837 29 100.0 36 ............................. AATCTTCTGCTAATGATTGAAACAGGAACATTTTTT 1152902 29 100.0 37 ............................. AATCCCCTAATAATAAAGGTTTTGTTGGTCTTACAAC 1152968 29 100.0 37 ............................. TTAGGATGTATTTTTGTTATCTCTGCTATTAAAGAAG 1153034 29 100.0 36 ............................. TTTGCTGTGCCAACTTCTGATATAGAACTTTTGAAA 1153099 29 100.0 36 ............................. CATCTTTGAAAAATAAATAACAATATTCTTTATACT 1153164 29 100.0 36 ............................. GTGGATTAATCGTTTTTTGTGGAAAAAAGGAGGGTG 1153229 29 100.0 36 ............................. TTTATTGTGTTTTTCATTTCTACACCTCTTTACTTA 1153294 29 100.0 35 ............................. TTATTCTCATTGAACGTTCCAGGTCCTTCTAAAGT 1153358 29 100.0 36 ............................. GAAAAAATGTGGGAAGAATTGACGGAAAGAGCGGAA 1153423 29 100.0 37 ............................. TTTAATACTCCCTTATTTCATTTTTACCCCCTTTTGA 1153489 29 100.0 36 ............................. ATGATTGAAACAGGGCATTTCAAGAACAATATCGCC 1153554 29 100.0 36 ............................. TCGCTACAATGATAAGCGATGTGTCAGATAACGAGA 1153619 29 100.0 36 ............................. AGCTCATAAGTGATTGTGAGTTTGGATAAGATATTA 1153684 29 100.0 36 ............................. AGTTGTAAAATTCCTTTGTAATTCAAAAGAAACATC 1153749 29 100.0 36 ............................. AAACCTTTCAAAAACTCCTGCCTTGCAATTACAGCT 1153814 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 35 29 100.0 36 ATTTTAATAGCACAATTTGTATTGTAAAT # Left flank : TAAAATATGGTGGTAGTATGTATATAATTTTAGTTTATGACATCCTAACAGATGACAATGGCCCAAGAATTTCTCGAAATGTATTTAAAATTTGCAAAAAGTACTTAACAAATGTTCAAAAATCAGTATTTGAAGGAGAAATAACCCCAGTTTTATTAAAAAAATTAAATCTCGAACTAAAACGATACATTCGCAAAGACAAAGACTCATTAATAATTTTCAAATCACGTCAAGAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGAAGACGACAAAACCTCAAATTTCTTTTAATAATTCCAGAAAAATCTGTCGATGTCCAATAACTAAAAAATCTCTGTATACCGACAGATTCCTAAAATTACTGATTTTTACTGATTTTCTTAAATATTTTATTTTGAAAATAAAAAATCATCTTTTAAAATTTTTGGAAAAAATTAGGTATCGACAAAATTGTGAAAAAATGATATTATATTTAGGGTAACCAATAATGATATG # Right flank : TTACATTTTACCCTTGACTATTGCAAGCATAATTTGTAAATTGTAAAATATTAATCAGTAAAATAGTTGCACTTTTGTTAATAAAGTAAGGCTATTTTTAGTTTACAAACATGTTTTCTTGTTTATTTTATTTGAAATTCTAAGAAAAATAGGTTAAAATATAATGATAAAAAGAATAGTAAAATTTAAGTAAGGGGGAATGCGGATGAAAAAAAATGTAGCAGCATTTTTTGATATAGATGGAACAATTTATAGGGATTCTTTGCTGATTGAACATTTCAAGATGCTTGTGCAGTATGAATATATTGATATGATGACTTGGGAAGGGAAGGTTAAGGAGAAATTTTCCAAGTGGGAAAACAGGACTGGGGATTATGACGACTATCTGGATGAGCTTGTACAGACTTATATGGAGGCATTAAAGAATTTTAGCAAGGAGGATATGGATTTTATTGCTAAAAGAGTGATGAAACTCAAAGGGGATAAAGTTTACCGATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATAGCACAATTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1341592-1342223 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019831.1 Leptotrichia trevisanii strain JMUB3870 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1341592 37 100.0 40 ..................................... CGTTAATATTTCCACTCCGAATGGCCGTGGTGTAAGTATT 1341669 37 100.0 36 ..................................... ATTCCAAAATTATCTGAACATTGCTTTGAAACAATA 1341742 37 100.0 36 ..................................... TTAATGAAGAACGGATGGAAACAGACGACGTTAAAG 1341815 37 100.0 40 ..................................... ATTGAAACATTAGTAAAGGAAGGTGTGATTATTAATTGTA 1341892 37 100.0 36 ..................................... AGGATCAGCGATTTCGTTGTTGCCGTTTTCCACAAC 1341965 37 100.0 36 ..................................... TTTTTTTCGTACACTAGATCATCGATCTTTCGATCT 1342038 37 100.0 37 ..................................... CGACCTGATCTAGTTCTAACTAATGCAGAAACGATTA 1342112 37 100.0 37 ..................................... AGTTTTATAACAACTCTTATTCCTTCCCTGTCTGACT 1342186 37 91.9 0 ........................T....T......A | A [1342218] ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 99.1 37 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Left flank : ATAATTGTAAAAAAAGGCGAATTAGCAAAAATAAATAAAGGAATGTCACAAAAAGGCTTTGCTGAAAGATGTACTTATACAGTAAAAGAATTTCCAAAAAGTAATCTTTCAAAAAAGGCTGAAGAAGCCTTGAATAAGATATTTTCATCTATGAAATAAAATTATTGAAAGCAGATTTGAAGAAGGATACTGAATTACAAAATTTGTTTTTTGGTATCTTTTTATTTAGGAGAATAAATTTTGATAATAATTTTTTAAAAAAATTTTGAAAAATCAAAAAAATGTGGTACAATAAGTTCGTGGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGAGAAAAATCCATTCAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATGTCAAAAAAACAGCAAAAAATGATAAAAATTAAGCAAAAAAATGCGATTTTAATGTCTGAAAAAATTTCTGTAATACCGATTAATAAAGGATTTTCTCAAAAGTACGG # Right flank : ATAACAACTTTTGTATAAGGTTGTTTTTTTGTTTGAGAATAAAATTAGGGGGTTGAAAAAAAAACGAAAATGTGTTATTATAGTTACAGAAAATAATTTTAGGTAGAGAGTGGGTTATCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAACAGATTTTAGATGAGTTTGAGAAGAAAATCGAACAGCATTTAAAGAAGATGAATCTGGAATTGGCAGATTTGGAATATGTGAGGGATGGGGGATATAATTATTTGAGGGTGTATGTGGAGAAAATGGATGGAACTACGACACTTGATGATTGTATTGATTTTAGCCGTGAGATTGATGGGATTGCGGATGAGATGATTCAGGAGAAGTTTTTTCTGGAGGTTTCGACACCAGGGGTTGAACGTAGATTGAGAAAGCCTAAGGATTTTGTGAGATTTTTGGGAGCGAGGATTAATGTTCAAACCAGAAGTAATATTGAAGGGGCGAAGAGATTTTTAGGAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 1633315-1632832 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019831.1 Leptotrichia trevisanii strain JMUB3870 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1633314 37 100.0 38 ..................................... GACATCGCAAATCTTGTGATATTCTTAGTAACTCTGTA 1633239 37 100.0 39 ..................................... TTGTAATATACCCTTAAGGATGCTTTGAATTCAACAAAG 1633163 37 100.0 37 ..................................... AAATGTATGGTTTATCTCTAACACTTTTTCTTCGACA 1633089 37 97.3 36 ........................C............ AACCTAAAAAAGATAATGGCTTCCAACACAACCGAA 1633016 37 97.3 36 ........................C............ GTATGAAAATTGATCTTTTTATGCCATTTTCTTGTA 1632943 37 97.3 38 ........................C............ AACCCATATCCTAACATATTACCTATACCAGTAATAAC 1632868 36 89.2 0 ..............................A-.C..T | C [1632839] ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 97.3 38 GTAAAAGTAGTATATCCATTAAAATAAGGATTGAAAC # Left flank : TCTAGGATTTGAAGAAGAATTTGAAGTGAAGAATGTAAATCCAATTGTGTTAAATGGTTTAAATGTGGAAACAACACAGCACGATTTCTTCTCGAAAAAATCTACGAATTATGAAAAGGCGTTGGAAGTGGTGCATTTGCATGATGATGACTTTAAGTTTGATGAAGAAGTGAATGCAGATGATTTGATTTAAGTTTGGAAACGTACGAAAATGAGAGCTTTAATTACTGGTTCTCATTTTTTTGAAAAAATATCCAAAAAGATTTTGAAAAAAGAGAAAAATGTGGTAAAATAAGTTTGTAGAAAAAATTCCTGCCATTATAAGAAATGAAAAAAAGGAAAGAAAATCCACTCAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATACTAAAAAGACGTCAAAAAATGATAAAAATCAGTCAAATAATTTCAATTTTAATGTCTGAAAAAATTGCTGTAACACTTATAAATAAAGGATTTTCGCAAAAGTACGG # Right flank : AATAGTCGTTGTGTAAAAAGCAATGATTATTTTTTTATAAAAAATAAAAAGTTGATAGAAAAATAGTAGAAAATAGAATAGAATTAAGCAAAATTTTTAAAAGTTTTAAAGATATTAGAAATAACATATCACATACATTGGAAGATAAGGCGGAAATTCAGGAAATTATTTCAAAAATTCCAGAAAATTTACAAAAATTGAGAGAAATATTTAAGAGGGAATATACAAATAAAATTCTGAAATCTAAAAACCTGCAATTACAGTCAACATATACTTATTTAGAAAAATTGACTGAAGAAGAGCGATTTGTGGAAATTGGAAGAATAGGATCCAATGGCATATATGATTTTTTATTTAAAGTACTTAATGCACAAAAATCAGGAGAAAATAAAAATATTTTAATCACAGTTATTTGGCTGTGATTTTTTTTTGAAAAAAATAGGTTAATAATGAAAAAAATTAAGTTTGAGGAAAAGAGTATAATGGTTTTGTAAATGAGA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAAGTAGTATATCCATTAAAATAAGGATTGAAAC # Alternate repeat : GTAAAAGTAGTATATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //