Array 1 677458-676848 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MKMS01000015.1 Listeria monocytogenes strain NRRL B-33181 PROKKA_contig000015, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    677457	    29	 100.0	    34	.............................	AAAAAAGCTAAAAATGCAATCAGATTCATGGAAG   	
    677394	    29	 100.0	    36	.............................	TTGAATACACCTACAAGAGCTGTTAATTTTGAAAAT 	
    677329	    29	 100.0	    36	.............................	CAAAATTAGAGCGATTTTTAACAAGGCTGTTCATTT 	
    677264	    29	  96.6	    36	..............A..............	TCAGTTGATACGTCTGGCTTTTTTCAACAATTTTAT 	
    677199	    29	 100.0	    35	.............................	AAGAATGTTTTATACGAGGAAAAAATACTTGATAT  	
    677135	    29	  96.6	    37	..............A..............	GTGTGTCCGCTTTTATTATCTGAGCGCAATTTCTTGT	
    677069	    29	  96.6	    34	..............A..............	TTTGGTAAAACTCGTTTGCCATACCAGTCACGTT   	
    677006	    29	  96.6	    37	......A......................	GAAGGTGATAGTCCAAGCCGATAGATGTTTTTATTGC	
    676940	    29	  96.6	    35	..............A..............	GTTTTAGCCCGGGCTGTAAAAAACTGACTATCAGT  	
    676876	    29	  75.9	     0	A..G..A........CA.A....A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        10	    29	  95.9	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGGGACCGACAGAAAGTTGTAAGTGGCTGGGGGAATGGGAATTTGGCGGTATTTGCTTGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  CTCCTCCATACACAACCCCACCACCATCCATCAAACAAAAAAGCGTAACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCAGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA

# Questionable array : NO	 Score: 5.75
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   GTTTTAGTTACTTAATGTGAAATGTAAAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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