Array 1 143128-142963 **** Predicted by CRISPRDetect 2.4 *** >NC_017957.2 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 143127 31 100.0 36 ............................... CGTCGCCGCGGTCGGCGTGCGGGTGGGCGCGACTGG 143060 31 100.0 36 ............................... GCGCTGTGCCTCGGTCATCGGCCCCCTGAAGCCGGG 142993 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 100.0 36 GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Left flank : CGCTGGTGGCCTCCACCGGCGGCGTCACCCTGCTGCCGGCCTATGTGGAGCCCCTGCTGCCGCGATCGCTGGTCAGCCGGCCGCTTGCCGGCAACCCGCCGGTGATCGGGATCGCGGCCGGCTATCGGGCGGACAATCCCTCGCCGGTGCTGCACACCTTCCTTGAGAACATCGACCAGCTGATCGCCGCACGGGCCGCCCCCGGCGGCCGGCCCGGCCAGCCGGGTTGACGCTTGTATCCGCCATCCTCTGGTTTTGTAGTCCGCCGGCTGGCCGGTCGCCATGGCCATCCGGGGCGATCGCGGACCTGCACCGCCGCGCCCGCGAACCTCAAGCTCCCGTAAAAAACCCGGGAGGTTCGCGGGAAAAATATTATCAGGATTTCAATGGATTAAATTACACAATATATGCATGTTCATTCCCGGGTATGACGTCCAGACGAGGTTCGCGCGGATCGCCTTTTTCCGGAGCCGGATTCAGGATATTAAGAGGGGGTGGGG # Right flank : CCCCACGGCTCCGGCGCCAACCGGATCAAGATTTGTCGCCCCCTTTCGGGGCCGCGACCTGTTGCGGCGGATCGAGGCCGCCGGGTTCGGGATCCCGGCGATGGGACACCGTGCCGGCCGCTGGTGTGGCCGCCCCCGGCCGCCCGCCCGCCGGCCATGATCTTCAGCCGCGAGATCATCTCCCGTTGCGCGAATCATTTTGACAAAATAATCTCACAGGACGATATCCCGCCCCTCCGGAGGATCGGTCTTGGCGCCGCCGCATGTCCTGCTGAATGCTTTCGAGATGAATGCGGTCGGCCATCTGGCCCATGGGGTGTGGAGCCATCCCGAAGATCGGGCGACCGGCTATCGGCGCATCGGCTATTGGATGGAGCTGGCGCGGATCCTGGAGCGGGGGCTGTTCGACGGGCTGTTTCTGGCCGATGTCACCGGGGTTTACGACGTTCATGGCGGCGGGGCGGCCACCGCGATCGAACGGGCGGTACAGCTGCCGGTGA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 231261-232588 **** Predicted by CRISPRDetect 2.4 *** >NC_017957.2 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 231261 31 100.0 34 ............................... GCGGGGCACCGGTACAGCGTGGAAGCCCGCGCGA 231326 31 100.0 34 ............................... CGGATCAGTGCCCCGGGGGCGGCGGCGCTGACCC 231391 31 100.0 33 ............................... GAAATCGACTTTGTCGAGGTGGCGCGATCTGGC 231455 31 100.0 33 ............................... CGCCAAAACGCGCGTCTGACGATTCACCGTGGC 231519 31 100.0 33 ............................... CCTGAGTGTGTAACCGCACTCACGAATCAAATC 231583 31 100.0 35 ............................... CACTGGAGCCCGGCGACGCTCAAAAAAACCTTCGG 231649 31 100.0 34 ............................... ACGCCCGAGGCCGATCCTGGCGATGGTGCCGCCG 231714 31 100.0 33 ............................... TGGCCATCGCCGCGGCCCTGGAAGCGGAGGGCC 231778 31 100.0 34 ............................... CGTACTTCCGGAACGGCGAGGCCGTGAACGTAAA 231843 31 100.0 34 ............................... AGCTGCCGCGGCGCCCGCGCCCGGACCATCCCGT 231908 31 100.0 34 ............................... TGGTTGGTTGATGTCAGGCTGCATCAGGGGTCTC 231973 31 100.0 36 ............................... GCGGCGCGCTCGACCAGGTATTCCATAGCCGCGGAC 232040 31 100.0 33 ............................... GACGCCTGCGTGGCCTTCGCAGGTCACGATCTG 232104 31 100.0 34 ............................... CATGCCCACGATATTCGCGCGAGCAGGCGGGCGC 232169 31 100.0 35 ............................... CGGGTCGGATCTTGGCTGGAGGAGGCTTCCTGATG 232235 31 100.0 34 ............................... GACTCGGACGCACTGGCCGCCGCGGAGGACAACC 232300 31 100.0 34 ............................... CGTCGGCGTCGGCGAAGGCGGACATCAAGCCCGA 232365 31 100.0 35 ............................... ACGGCCGAGCGCCCAAGCTATGCCGAGCGACGCAC 232431 31 100.0 33 ............................... ACGGCATCGGATTTGATGCCGTCGAAAGGAGCG 232495 31 100.0 32 ............................... TTCGGCTGCCCGACGGCACGCCGTGCACCACG 232558 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 21 31 100.0 34 GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Left flank : GCGGCCTTCGTCGACCGGTTGCTCGCCACGGGCGCCTATGCCGATGTGGATGAGGTGATCGATGCAGGGCTCCGCGCCCTGCAAGATCAGGATGCAGAGATCGAGCGCCGGCTGCGAGAGGATGTTGCCCCGGTCTATGATGCCGTCGAAGCGGATCCTGGCCGCGTCATCCCTGTTGATGACGCCTTCGATCGTCTGCGCGCCTTGCATGCCAGTTGCGTGAAGGCCGGCAAGTGAGCCGTGGCGTTGCCCTCGCGGGCCTTCACCCTGGTCGATGCAGGGACCGCCTCCGCAGACCCACCACAAATCTGCCCCCGTCTCGCCCGCGAACCCCAAGCTCCCGTGAAAATCCCGGGAGGTTCGCGAAAAGAAATTGTCCCGTTTTTCAATTGGTTAAATTTCACAATTTATTCATGTTCATACTATGGAATGACTTCCAGAAGAGGTTCGCGCGGATCGCCTTTTTCCGGCCCCCGATTCAGGCTATTAAGAGGGGGTGG # Right flank : CCGAGGCCGAGACCGTATGGATCGGCGCCATCGCCTCGGCTTTCCCGGCTCATCGACCCCGGGTCACCCCCTTCTCCCGCCCCATCTTCACCCGCCCCACCCGCCGCACCACCGCCGGCGTCTCCACCAGCCCCGGCAGGGGGGCCGGCATGCGGCGGCGCCAGTTGGGGTGTTCGTGGATGGTGCCGGGCAGGTTGGGCTGGTCGTCCAGCCCGACCAGGTCTTCCAGCGGGGCCAGCACCAGGGGGGCGCGGCTGCGGCCCAGGAAGTCGAGGGCCGCGTCGATCACCGGGGCGGGCGTGTCGGGGGCGGGTTCGGGGCCGGTGGCGGTGCCGGCATTGGTGAAGGCGGTCCAGAGCCGGGTGCGGTCGCGGGTGCGGGTCTCCTGCGCCAGTGCCGCGGTCTCACCGGGCCCGAACAGCGAGAGGCGCTCGCGCCAGGCGATGTCGAGCCCCTGCCACCAGCCGGCGGTGGTCGGCAGGTCGTGGGTGGTGGTGGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 370687-369746 **** Predicted by CRISPRDetect 2.4 *** >NC_017957.2 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 370686 31 100.0 33 ............................... GGTTTCCAGTACCGCCCCCAGGGCGGCGTGATA 370622 31 100.0 34 ............................... AGCACTTCCCAGATCGAGGCCGTCGTCGACAAGA 370557 31 100.0 35 ............................... AGCGATATCAAGTCTGGTGGCCAAGGCGACCTGCC 370491 31 100.0 35 ............................... GATCTGATCGCGCACCTCCGCGGTCAGATCGAATT 370425 31 100.0 33 ............................... CGACGCCGTCGAAAGGGAGCCGAAATGAGCGAG 370361 31 100.0 33 ............................... CAGGCGCGCAGTTCGGGCGGCCAGATTATCGGC 370297 31 100.0 33 ............................... CGCAATGTCTCATCGCGGTAGCCGTCCATGACG 370233 31 96.8 35 ................G.............. CCTCCGGGCGGGGGATACTATTCGGCTGAGGAGTG 370167 31 100.0 35 ............................... AACCTGCAAGAGGCGCTGTCCCCGGGCTATCTCCA 370101 31 100.0 33 ............................... AGAGACTTCAGATGCCGAATAGAGATTTACGCC 370037 31 100.0 34 ............................... GCGTGACCCCAGGTGGAGGTAGCCCCCTCCCCGC 369972 31 100.0 34 ............................... TTGGCCTCCTTGTCGGCATCGCTGCCGATATAGG 369907 31 100.0 35 ............................... CGAACGTCTGGATGGGGGTGTCGGTGGAAGATCAG 369841 31 100.0 34 ............................... CCGGCGATGGGATCCGGCAACTCGGCGTAGGCGA 369776 31 96.8 0 .............................G. | ========== ====== ====== ====== =============================== =================================== ================== 15 31 99.6 34 GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Left flank : AGCCGGTCGGCCGTACCCGTTGCCTGTCTCAGGGAAGGGTCTCTCAAGGGGTCGGTCACCCGCGTCCTCGCCCTTTCGGGATCATGCCAAAGCGTTATTCCAAGCCGTCCTTTGGAAATTAAGGGAGAGGACGGCGCGGGGCAAGGGGTGTGGGGCAGGCGGATCCGCCATCCCGCAACACACAGGCCGGTGTCTGAAGCCCATGTCGGGTTCCATACCTGCCGATCTCCGTCCAGAATGCATACCGTCATCCTCGCGAAAGGCAACCGTCAGCCCTCACGCCGGACCGACGATATACCGCCCGAGGACCCGCCCCGCCTCGCCCGCGAACCCCAATCTCCCGTAAAAATCCCGGGAGGTTCGCGGAGAAAATATCTCTCTCTTTTCAAAGACTTAAATTTTACCCTTTATTCATGTTCATACTATTAGATGGTCTCCAGCGGAGGTTCGCGCAGATCGCCTTTTTCCGGCTGCGGATTCAGGCTATTAAGAGGGGGTGA # Right flank : GGGCAGTCTCAGATTGAGGCTGTCGTCGACAAGAGTCGCATCCTTGCGGGCGCGGCCCGAAACCGCTCCCCAGCAACGGGAGCCTTCGCTTCTTTTGCCCCGCCGCCTTCACGCACAGGCGCTGACCTGCCCCCTGCCATCCGTCCGGATCCATGACGAGCGGCCGCGGCAGATCCGGGGCGGAGAAACACTGCTCAGGCTGGTTCTGGCCTGGACCGGGATCGGGCGGTGGCAGATCGGGATGTGCGCATCCCCACGACGGCCCATGACATGGAACCTTCGCCCCCTGCCCGCGTTGACCCTTCGCCGGCAGTTCGACGCGGAGGGGATCCCATGGCCGAGCCGACGCCTGAAACACGCACGCGGTCCTGGCTGATCACCGCCACCGCGATCCTGTTCCTGCTGATCGCGCTGGGGCTGATCGGCGCCGGCGGCTGGCTCGGGGCCATGGGCGGGTCGTGGTATTATCTGCTGGCCGGGCTGGGTTTCCTGGTCACCGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 412552-412244 **** Predicted by CRISPRDetect 2.4 *** >NC_017957.2 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 412551 37 100.0 31 ..................................... TCGACCAGAAGCTCCGTCGCGTAATGGCGCA 412483 37 100.0 31 ..................................... CATATCTCCCCCACGGAGTTTGGATGATGGT 412415 37 100.0 29 ..................................... AGGTGGACTCGACGTCGAGGTGGATCTCG 412349 37 100.0 32 ..................................... CTTTGGCAGGTTTGCTTCGTACCTGCGCTTGA 412280 37 75.7 0 ..........................C..CCCATCCA | ========== ====== ====== ====== ===================================== ================================ ================== 5 37 95.1 31 GTTTGAAGCCATGACCAATGGCTCCGGTCATGGAAAC # Left flank : GCCGGTCTGGGCCGTGGCCTATATCATCGGCTGCGGCGTCTCGGCGCTGTTGTACCGGCGAGAGCTGTTCGGCCGCCCCCACCCGGCCGAGCCCCCGTCCGCCGCCAGACCGAACCGGCTGGCGCGGTACCTCGACGCCGCCTGCCGCCGTCTGCCGGAGGGCGGGCTGCGCCGCTGGCTGCACAGGCGCATTGCCTGCTACACCACCTATGTCCACCCCGGCCGCGACCCCGACCGGGCGGCCCTGCGCAATATCGGCCTGGGGCATGTCCTGGTCGTGCTGGTCTCTCTGGCCACAGGCTTCTGCACCTATACGCCCCCTGCGGCCCAGAAGCCCCCCTCTGAGGGCCGGATACCCAGTGGATATTATTATCTTATTGAAATATAATATAAAATATCAAAATCACCGGAGGACATCATGCTATCGTATGAAGCATCAAGGATGCCGACGGAAAATGGGATCTTCAGAGGCCAGTTGACAATGGGTTGGAAGGAGGGGA # Right flank : CGCCCGAGGTCCGGAGGCCGCGCCTCCGGGCGGGTCCGGGCGGCAGCCCGGTCTTCTGCCGTCAGTCTTCCGAGACGCTGAACCACCCGAGGCCGGCCGTCGCGCCCTGTCCCAGATGGGCATCGGCGGCGATGGCGAGCGGCAGGGCGAAGGCCGGGTCCAGATCCTGCAGGATCAGGCGGCCGCGGAAGCCGGCCATCGGGATGATGCGGCCGGCGAGGCGGCCGGAGCGGCGTTCCCAGCGGTCGGGGATCAGGCCGTCGGCCTGGATGCGCAGCCTGCGTGAGGCGGTGCGCAGGGCGCTGAAATCGGCGGCGATGGCGATGTCGTGCCAGCGGGCCAGGCCGCTGGCGCGGTCGGCGAGCATCATCGGCAGATTGTCGAGATGGCCGGCCAGCGCGCCGCCGGCCTTGAGGGCGAGCGGGGTTTCGATGTCCAGCACCAGGGCGCGCGAGGTGTCGGGCAGTCGGGTGTCGGGTCCTGTGGGCAGGCCCGTGACC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGCCATGACCAATGGCTCCGGTCATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 5 416722-416140 **** Predicted by CRISPRDetect 2.4 *** >NC_017957.2 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 416721 37 100.0 32 ..................................... CTCCGCTGCTTCGCCTCCTTATACAGTGTATA 416652 37 100.0 31 ..................................... GGCGAAAAACGAGGACCGCATGCGAAGTCTC 416584 37 100.0 31 ..................................... CAGAACGAGATCGGAAACGGTCATGGTCATG 416516 37 100.0 31 ..................................... CTGGCGACGTCGAGGAACGGGAACGGCCCGT 416448 37 100.0 29 ..................................... TCGAGAGGATAGGTTTTGGCGATTGAGTG 416382 37 100.0 34 ..................................... TCCAGGCCGTGCTCCTTGTTGTAGGAGTCGACGC 416311 37 100.0 32 ..................................... ATGATGCCCAGCTTGAAGGCATCGATGAACAG 416242 37 97.3 29 ..............................A...... TATTTCCCGCCCCGCCGCGGCAATAACAC 416176 37 86.5 0 ................................AGTCT | ========== ====== ====== ====== ===================================== ================================== ================== 9 37 98.2 31 GTTTGAAGCCATGACCAATCGCTCCGGTCATGGAAAC # Left flank : GTGCGAACCCCACGGCCCGGCCGATAGCCATGGCTTGAGGGTTCGAAGGTCGCATCAAGCATCGGCCCCATGACCAGGGCCGCGGATGTCATCAGAACCCGATCCGCGACACAGGGAATGGCCAGCCGGCGGGTGCCGCCATCATCCTTCGGAACATCGAGCAGACGATAGGGCCCTGGCCGGTAGGTTCCGCCCCGCACATCGGCCGCCAGCCGGGCAAGCCGGGGCTCGACACCGATATGGAAGGCATCCAGACTTTCACCATCGCCACCGGGACCGCCACGGTTGCGCAACACCTTGAACCAGGCTTCCCAGAGCCGATCGGGAGCAAGCAGACGGTCGAACATGGCGGAAAGACCCAGTGGAATTCATAATTGTCTGATATTATTGCAGAAACCTGGATGTCTTCAAGGGACGAATACCTGTGTATGAAATGATCCCGATCCCGACGGAAAATGGACCAAAACAGGATATCTTGACAATGGCCTGGAAGAGGGGGA # Right flank : TCCTGTGTCTTACCCTCTTCCTTTTCAAAAGCGATCCTCTCCCCCTCCGATCCTGTGACCCTTCACTCTTCCCGCTCACCCGTCCGGATGATAGCCTCGTCCCAGGGTTGATCGGAGTGGGGGGCGCCATGCGGCTGGTCGTGGTGGTGGTGCGGGATCTGGTGACCGCCCGGGTGGCGGAGGTCCTGGCGGCAGAGAGCGGGCGCGGGACTGAAACGCTCGCGGTCGCGGGGTCCTGGCGGCAGACGGGTGGGATGCCGGCCGATCTGCTGGACCGGGTGATGACCCGGCTGGCGGCGTCCGAGACAGTCGCCACGCCGCGCCTGCGCGAGGTGGTGCTGGCGGGGATCGCCGATGCCGACGCCGCCGCGGTGATTGCGGCAACCGGGGTCAGGCTGCGCTGCCATCCGGGCCATGTGGTGGTGGATGACGGCCCGGGCACCGGCGCTGCGGCGGCGGGGTTTGCCGCTGCGCCGCAACGGCCGGTGTCGCTTCTGGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGCCATGACCAATCGCTCCGGTCATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 504628-505056 **** Predicted by CRISPRDetect 2.4 *** >NC_017958.1 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 504628 33 97.0 33 ................................A CCTTCGACGCGGTGTATGACGCGCCATCGACAG 504694 33 97.0 34 ................................T CGATGACGACCGAGTGGAGTGCCCCGGGTGCCTC 504761 33 100.0 32 ................................. GCGGCGATCCCCGCCAGCCCGCCGGGGTGTGC 504826 33 100.0 32 ................................. GAAAAAATCGAAACAAACCGCTTTACAGGGAG 504891 33 100.0 33 ................................. GCGGTGCTCGGTGCCGACACGCTCGGCATCGAG 504957 33 100.0 33 ................................. GCAGATGCCCGCACCGTTTTGATTTGTAATACG 505023 33 90.9 0 ..T.........................T...A | A [505050] ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.8 33 GTCGCACCCCTTGCGGGTGCGTGGATTGAAACC # Left flank : ACCGGCGCTCCGTCCAGCGCCTTCGCCGCCTGCAATCCGCCGAAGCCGGCACCTGCGATCACCACCCGCGGCCGCCGTCCATTGGCCCGAACCTCGCCGGGCGCCGGAACACGATCCGAAGCGGTGGTCACCTCGGGCGGATGAAGATCGGCCATGATCCGGCTCCTGCTGCTGTGGCGCACTATCATATGGGCAGACATCCCCCCATCCGCCACCCGAACCACGCCCCGGACCCGCGGGTTCCCCCTGCCCGGGCCCCCCGCGCATATCCCCCTTGCAAGCCACCCCACCCCCGGGCGATCATCCCTCCCTCAGCCCCGATCTCCGCGAACCCCAAGCACACGTAAAAACCCCGGGAGGTTCGCACGCCAGATTCCCCTTATCTTTCAAACACCTGCATTTTGCAGTGACGTCACACACATACCACCGCATATCTCGCCCCGAGGTTCGCGCAAATCGGCTTTTTTCCGACGCTGAATCAGGATATTAAAAGGGGGTGA # Right flank : AAAGCGCCGATCGACCGCTCCGGGACGCATGGACATCGCCGGATCAGGAGGTAGGAGATGGCCACCACCAGCAGAATCTCCATCACTCTCGCACCGGAACTGACCGACGCCGTTCATGCCGCAGTCTCCTCCGGAGAGTATGCGACCGCGGCCGATGTCGTGCAGGATGCCGTGCGGGAATGGAAGGAGCGGCGCGACCTGCCGGGCTACACGGTCGAAGAGCTGCGTGCAGCCGTGCAAGAGGGGCTTGAGAGCGGCCGCAGCACGCTTGCGACCATGGCGGAGGTCAAAGCCGAGGCACGGCGTCGGTTCCGGGCACCGGCCCCGACCATGCGGCCCCCACAACGCTGAGGCGGCCCACCCCAAAGAAAAACCGCCGGAGAGTCCCCTCCCCGGCGGCATTCCGTCCGTTCCTGGCCGTCCGCCCCGTCCGCTCACCCGGCCCGAAGCTGCCGGGTCACCGCGCCGACATTTTCCGACACGTCGCCCACATCGCGGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTTGCGGGTGCGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 566600-567031 **** Predicted by CRISPRDetect 2.4 *** >NC_017958.1 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 566600 36 100.0 30 .................................... GGAGCCGGGGCGGATGTGACCAGTAAGGAC 566666 36 100.0 30 .................................... GAGCGAGCCATCGCAGAGTTCCTTGACGTG 566732 36 100.0 30 .................................... GATTTGAGCGTCAAGGCCCCCAAGCTTCCG 566798 36 100.0 30 .................................... CCCCGCTGCGTGGACCAGCTGAGTGATCGT 566864 36 100.0 30 .................................... TCGCTGTCCGACGCCGACCGCTACCCCCTG 566930 36 100.0 30 .................................... ACAGCCAAGTACATCGGCGACCCGACGCTC 566996 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGTT # Left flank : CGGGCGGGCTCGGCATGCTGGCCGATGCGTTCGAAGGCAAGGTCCGCACGCTCGATTACAAGACCCTGCGCTATCCCGGTCATCGCGCGATCATGAAGCTTCTGCTCGAAGATCTGAAGCTGCGCGACCGGCGGGAGCTGCTGGAACAGGTTCTGGAAGCCGCCGTGCCGACCACGGACCAGGATGTGGTGGTGCTCTCGGTCTCGGTCGACGGCATCGCCGACGGCCGCCTGACCCGCCGCTCGTGGAGCCGCGAAGTCGGCGCCCGCGAGGTCGACGGCATGCACATGTCGGCCATCCGCCTGACCACCGCTGCCGGCGTCGCCGCCGTCATCGACCTCCTGGCCGAAGGCCGCCTGCCCCGCAGGGGCCTGGTCCGCCACGACCACATCGACGCCGACGCCCTGCTCGCCAACCGCTATGGGCGGCATTACGCCTGATCCGAACACAGCCCGAAGAGGCGCCCACCGCTGCGGCGCCTCTTCGACTGCCCGCAATGG # Right flank : TACCTCGCTCGCAACAGATTGATCCTGCTGTGATTTCCGCCGGGAATGCCGCGCCGAAATCACAGCAGGACCATCTGATTGGTGCCGAGGCGCTCGGTTTTTGAGGCGAGGCCGAGCATGACTTCCATACGCGCATACTGCTTGTCCGTGATCTGAAGCGTTCGCACGCTGCCCTCCCGCGGCAGGCTGACGCGGACGCGCCTGATATGCTTGTCGACCGCGTCCTGCCCGCGGCAGACCCGTGCATAGACGGAAAACTGCAGCATCAGGAAGCCGTCATCCTTCAGCGCTTTCCTGAAGCGGGTGGCCCTGCGGCGCTGCTCGCGGGTTCTGACCGGCAGGTCGAAGAATACCATCAACCACATGAAACGGACATCCTCGGCTTTCATGGCGCGCCCTCATCCTTCGCCGGGCCAGCCTGGCATCTGAAGCAGGGCTGCACTGCTGTTCTCCATAGCCCGTACCATCGAGGTGGCGGCCACTTCCGTCGCTGCCAGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //