Array 1 195034-193052 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKQ01000002.1 Salmonella sp. gx-f4 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195033 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 194972 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 194911 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 194850 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 194789 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 194728 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 194667 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 194606 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 194545 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 194484 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 194423 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 194362 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 194301 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 194240 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 194179 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 194118 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 194057 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 193996 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 193935 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 193874 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 193813 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 193752 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 193691 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 193630 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 193569 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 193508 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 193447 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 193386 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 193325 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 193264 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 193203 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 193142 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 193081 29 100.0 0 ............................. | A [193054] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214769-212666 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKQ01000002.1 Salmonella sp. gx-f4 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214768 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 214707 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 214646 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 214585 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 214523 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 214462 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 214401 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 214340 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 214279 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 214218 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 214157 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 214096 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 214035 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 213974 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 213913 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 213852 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 213791 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 213730 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 213669 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 213608 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 213547 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 213486 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 213425 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 213364 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 213303 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 213242 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 213181 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 213120 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 213059 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 212998 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 212937 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 212876 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 212815 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 212754 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 212693 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //