Array 1 47808-48568 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJJK01000012.1 Escherichia coli strain MOD1-EC901 MOD1-EC901_12_length_139910_cov_35.1945, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47808 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 47869 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 47930 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 47991 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 48052 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 48113 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 48174 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 48235 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 48296 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 48357 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 48418 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 48479 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 48540 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74267-76003 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJJK01000012.1 Escherichia coli strain MOD1-EC901 MOD1-EC901_12_length_139910_cov_35.1945, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74267 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 74328 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 74389 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 74450 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 74511 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 74572 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 74633 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 74694 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 74755 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 74816 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 74877 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 74938 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 74999 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 75060 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 75121 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 75182 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 75243 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 75304 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 75365 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 75426 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 75487 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 75548 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 75609 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 75670 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 75731 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 75792 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 75853 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 75914 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 75975 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //