Array 1 1195032-1194342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014016.2 Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1195031 36 100.0 29 .................................... TTTCCTGTATCATGAAACACACAAAACTT 1194966 36 100.0 30 .................................... TGTTAGAAAGCCGATGACATCCTCCGTAAT 1194900 36 97.2 30 ................T................... ATATCAAATGTTAGATTTAGGTAAGTCACA 1194834 36 100.0 30 .................................... TGAATTGGGCGTAAAAACATTTGATGCATC 1194768 36 100.0 30 .................................... CTTTGCTTTAATCAATACGGGTTTACCGCT 1194702 36 100.0 29 .................................... TGCAATTTTTAAATACTTGTCGCCCACTT 1194637 36 100.0 29 .................................... TGCAATTTTCAAATACTTGTCGCCCACTT 1194572 36 100.0 29 .................................... TAATCTCGATTTTCGCTTTGTTGTCACTA 1194507 36 100.0 29 .................................... TAATTGTTTTCCATTAATACGTTCTTTTG 1194442 36 100.0 29 .................................... GATAATACACGCAAGTTAGCACTAGAAAG 1194377 36 86.1 0 .............................T.G.CCA | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGATGATTTAAATGCGATAGAGCAACGCAAATTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGCTGGTTTTGTTATTCCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAATAAATATCTGCAAACTCTAAATATGTTTAGTATTATTGTTACGAGCCATCCTTATTTTATTATAGAGTCTGATACATTAGCGCTTATTAAAACGAATGGAGAATCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAACAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : TGGAGATTAACTTAACTATTTATCATGTTTGTATGAGTGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 2570472-2571034 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014016.2 Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2570472 36 100.0 30 .................................... TGTTTTAAATGCTTCTAAAGAAAGTGCTTT 2570538 36 100.0 29 .................................... ATGAACTCAATATCAGTGATAAGCGATTT 2570603 36 100.0 30 .................................... CAAGGTGAGCGTGTTTATCCGAACAAAAAG 2570669 36 100.0 30 .................................... TTGAACATATATGAAAGCTCACTGTAACCC 2570735 36 100.0 30 .................................... TTGTAGCATAACAACAAACTGTGCTCCTAA 2570801 36 97.2 30 ...........................A........ AAAGCAGTATGAATGCAACAACAAAATCCT 2570867 36 97.2 30 ...........................A........ AAAGTAATATCAATACAAATCGTATGGCAA 2570933 36 97.2 30 ...........................A........ ATTAAGTTAGGCTTTGCAGATGAGAAATCA 2570999 36 88.9 0 ......................A.....T..A...A | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 30 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCACCTAGACATCGATAAGGAGAAAATTTCTTCAGCATTATCGGCGTATCTATTTTCTTAACCAAAATTCAAGTTTATAATTGTGCTAGAG # Right flank : AAAAGATTTTTCTTGTTTTGATACTATAGTTTCAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATAAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATCTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACTCAATTACTACACGTTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACCCCTTTAGGTATCGCGGTAGTTTCAGCAGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAACATA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGATTC # Alternate repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //